Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8482001.1

Orthogroup ID

OG0004925

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2260

Gene Structure 2260 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8482001.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 413 bp

gtctccttcggcttcacacagccacccttcccaaccatgaccgttttcatttcctctatatataccccccacatctcacatattcccctctctgtccccactcagttttcaaagttgccaaaatctaaccattcaatcctcgtctgcttctcttctccaccagatatggatgccgcaggtgccacaactctctaccctttgcaccggtcgaaaactattcacctggtgaggcatgcacaagggattcacaatgtggaaggagaaaaggaccattcggcttacatgtcttttgatctttttgatgcacatcttacccctcttggctggcaacaggttgataatctgcacaagcatgttcgagcatgtggacttgcaaaaaaaattgatttagtgatcacatctcctttgctaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

His_Phos_1

Protein Analysis

137

Amino Acids

15.19

Weight (kDa)

8.03

Isoelectric Point (pI)

52.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58280 AT1G58280 AT1G58280 AT1G58280 AT2G17280 AT2G17280
fragaria_vesca	FvH4_5g33820 FvH4_5g33820
malus_domestica	MD08G1208000.v1.1 MD09G1057400.v1.1 MD15G1392200.v1.1 MD15G1392500.v1.1
prunus_persica	Prupe.1G540200_v2.0.a1 Prupe.1G540200_v2.0.a1 Prupe.1G540200_v2.0.a1
pyrus_communis	pycom08g17990
rosa_chinensis	RchiOBHm_Chr7g0233171
rosa_laevigata	RLG00000001290
rosa_multiflora	Rmu_co8482001.1_g000001 Rmu_sc0002061.1_g000001
rosa_roxburghii	Rroxscaffold_3G00227550 Rroxscaffold_5G00373270
rosa_rugosa	Rorug07G0279300 Rorug07G0279400
rosa_samantha	Rh3BG315600 Rh7AG435100 Rh7BG407500 Rh7CG454100 Rh7DG422900
rosa_wichuraiana	Rw7G035790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	167
Acc36I	ACCTGC	1 cut(s)	167
AccB1I	GGYRCC	1 cut(s)	179
AciI	CCGC	1 cut(s)	174
AdeI	CACNNNGTG	2 cut(s)	226, 253
AflIII	ACRYGT	1 cut(s)	282
AgeI	ACCGGT	1 cut(s)	204
AgsI	TTSAA	2 cut(s)	111, 135
AjnI	CCWGG	1 cut(s)	222
Alw26I	GTCTC	1 cut(s)	7
AsiGI	ACCGGT	1 cut(s)	204
AspS9I	GGNCC	1 cut(s)	268
AsuHPI	GGTGA	2 cut(s)	212, 238
AvaII	GGWCC	1 cut(s)	268
BanI	GGYRCC	1 cut(s)	179
BciT130I	CCWGG	1 cut(s)	224
BclI	TGATCA	1 cut(s)	393
BcoDI	GTCTC	1 cut(s)	7
BfuAI	ACCTGC	1 cut(s)	167
BisI	GCNGC	1 cut(s)	174
BlsI	GCNGC	1 cut(s)	175
Bme1390I	CCNGG	1 cut(s)	224
Bme18I	GGWCC	1 cut(s)	268
BmgT120I	GGNCC	1 cut(s)	268
BmiI	GGNNCC	1 cut(s)	181
BmrFI	CCNGG	1 cut(s)	224
BmsI	GCATC	2 cut(s)	160, 292
BsaBI	GATNNNNATC	1 cut(s)	306
BsaWI	WCCGGW	1 cut(s)	204
Bse118I	RCCGGY	1 cut(s)	204
Bse8I	GATNNNNATC	1 cut(s)	306
BseBI	CCWGG	1 cut(s)	224
BseGI	GGATG	1 cut(s)	175
BseJI	GATNNNNATC	1 cut(s)	306
BseMII	CTCAG	1 cut(s)	116
BsgI	GTGCAG	1 cut(s)	329
Bsh1285I	CGRYCG	1 cut(s)	209
BshNI	GGYRCC	1 cut(s)	179
BshTI	ACCGGT	1 cut(s)	204
BsiEI	CGRYCG	1 cut(s)	209
BsiSI	CCGG	1 cut(s)	205
BslFI	GGGAC	1 cut(s)	80
BsmAI	GTCTC	1 cut(s)	7
BsmFI	GGGAC	1 cut(s)	80
Bsp143I	GATC	2 cut(s)	292, 393
BspACI	CCGC	1 cut(s)	174
BspCNI	CTCAG	1 cut(s)	115
BspLI	GGNNCC	1 cut(s)	181
BspMI	ACCTGC	1 cut(s)	167
BspT107I	GGYRCC	1 cut(s)	179
BsrFI	RCCGGY	1 cut(s)	204
BssAI	RCCGGY	1 cut(s)	204
BssMI	GATC	2 cut(s)	292, 393
Bst2UI	CCWGG	1 cut(s)	224
Bst4CI	ACNGT	1 cut(s)	43
Bst6I	CTCTTC	1 cut(s)	157
BstC8I	GCNNGC	2 cut(s)	234, 326
BstDEI	CTNAG	2 cut(s)	102, 410
BstF5I	GGATG	1 cut(s)	175
BstKTI	GATC	2 cut(s)	295, 396
BstMAI	GTCTC	1 cut(s)	7
BstMBI	GATC	2 cut(s)	292, 393
BstMCI	CGRYCG	1 cut(s)	209
BstMWI	GCNNNNNNNGC	1 cut(s)	179
BstNI	CCWGG	1 cut(s)	224
BstNSI	RCATGY	4 cut(s)	236, 286, 356, 366
BstSCI	CCNGG	1 cut(s)	222
BtsCI	GGATG	1 cut(s)	175
BveI	ACCTGC	1 cut(s)	167
Cac8I	GCNNGC	2 cut(s)	234, 326
Cfr10I	RCCGGY	1 cut(s)	204
Cfr13I	GGNCC	1 cut(s)	268
CsiI	ACCWGGT	1 cut(s)	222
CspAI	ACCGGT	1 cut(s)	204
CviAII	CATG	5 cut(s)	37, 233, 283, 353, 363
CviJI	RGCY	4 cut(s)	12, 22, 278, 324
CviKI_1	RGCY	4 cut(s)	12, 22, 278, 324
DdeI	CTNAG	2 cut(s)	102, 410
DpnI	GATC	2 cut(s)	294, 395
DpnII	GATC	2 cut(s)	292, 393
DraIII	CACNNNGTG	2 cut(s)	226, 253
Eam1104I	CTCTTC	1 cut(s)	157
EarI	CTCTTC	1 cut(s)	157
Eco47I	GGWCC	1 cut(s)	268
EcoRII	CCWGG	1 cut(s)	222
FaeI	CATG	5 cut(s)	40, 236, 286, 356, 366
FaqI	GGGAC	1 cut(s)	80
FatI	CATG	5 cut(s)	36, 232, 282, 352, 362
FbaI	TGATCA	1 cut(s)	393
Fnu4HI	GCNGC	1 cut(s)	174
FokI	GGATG	1 cut(s)	182
Fsp4HI	GCNGC	1 cut(s)	174
GluI	GCNGC	1 cut(s)	174
HapII	CCGG	1 cut(s)	205
Hin1II	CATG	5 cut(s)	40, 236, 286, 356, 366
HinfI	GANTC	1 cut(s)	244
HpaII	CCGG	1 cut(s)	205
HphI	GGTGA	2 cut(s)	212, 238
Hpy166II	GTNNAC	1 cut(s)	368
Hpy8I	GTNNAC	1 cut(s)	368
HpyAV	CCTTC	3 cut(s)	16, 37, 251
HpyCH4III	ACNGT	1 cut(s)	43
HpyCH4V	TGCA	5 cut(s)	202, 236, 305, 346, 374
HpyF10VI	GCNNNNNNNGC	1 cut(s)	179
HpyF3I	CTNAG	2 cut(s)	102, 410
Hsp92II	CATG	5 cut(s)	40, 236, 286, 356, 366
Ksp22I	TGATCA	1 cut(s)	393
Kzo9I	GATC	2 cut(s)	292, 393
LpnPI	CCDG	7 cut(s)	162, 174, 209, 218, 236, 310, 317
LweI	GCATC	2 cut(s)	160, 292
MabI	ACCWGGT	1 cut(s)	222
MalI	GATC	2 cut(s)	294, 395
MboI	GATC	2 cut(s)	292, 393
MboII	GAAGA	1 cut(s)	144
MluCI	AATT	1 cut(s)	381
MnlI	CCTC	5 cut(s)	64, 98, 149, 222, 327
MslI	CAYNNNNRTG	1 cut(s)	351
MspI	CCGG	1 cut(s)	205
MspR9I	CCNGG	1 cut(s)	224
MvaI	CCWGG	1 cut(s)	224
MwoI	GCNNNNNNNGC	1 cut(s)	179
NdeII	GATC	2 cut(s)	292, 393
NlaIII	CATG	5 cut(s)	40, 236, 286, 356, 366
NlaIV	GGNNCC	1 cut(s)	181
NspI	RCATGY	4 cut(s)	236, 286, 356, 366
PaeI	GCATGC	1 cut(s)	236
PaqCI	CACCTGC	1 cut(s)	167
PciI	ACATGT	1 cut(s)	282
PfeI	GAWTC	1 cut(s)	244
PinAI	ACCGGT	1 cut(s)	204
PkrI	GCNGC	1 cut(s)	175
PscI	ACATGT	1 cut(s)	282
Psp6I	CCWGG	1 cut(s)	222
PspGI	CCWGG	1 cut(s)	222
PspN4I	GGNNCC	1 cut(s)	181
PspPI	GGNCC	1 cut(s)	268
RseI	CAYNNNNRTG	1 cut(s)	351
SatI	GCNGC	1 cut(s)	174
Sau3AI	GATC	2 cut(s)	292, 393
Sau96I	GGNCC	1 cut(s)	268
ScrFI	CCNGG	1 cut(s)	224
SetI	ASST	3 cut(s)	181, 225, 336
SexAI	ACCWGGT	1 cut(s)	222
SfaNI	GCATC	2 cut(s)	160, 292
SinI	GGWCC	1 cut(s)	268
SmiMI	CAYNNNNRTG	1 cut(s)	351
SphI	GCATGC	1 cut(s)	236
Sse9I	AATT	1 cut(s)	381
SsiI	CCGC	1 cut(s)	174
StyD4I	CCNGG	1 cut(s)	222
TaaI	ACNGT	1 cut(s)	43
TaqI	TCGA	2 cut(s)	209, 358
TasI	AATT	1 cut(s)	381
TauI	GCSGC	1 cut(s)	176
TfiI	GAWTC	1 cut(s)	244
TspDTI	ATGAA	1 cut(s)	37
VpaK11BI	GGWCC	1 cut(s)	268
XceI	RCATGY	4 cut(s)	236, 286, 356, 366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.