Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0004925

Physical Location & Seq

Genomic Coordinates Reverse (-)

3793687 .. 3795943

Gene Structure 2257 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1057400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGCAGACAGCAGTGGGTGTTTTTGGGGGTGAAGCATACACAGACGGGATAGATGTACCTCCTCTAATGGTTGCAAATGCTGGAAACAGTGACCATCCTGCAATTTCAAGTCTAAACTCCCCACCATTTATAGCAGTGGAGCTTTGCCGGGAACATTTGGGTGTTCATCCATGTGACCAAAGGAGAAGCATTAGCGAGTATCGGCCTCTTTTTCCTGCAATTGATTTTTCACTGATAGAGAATGAGGATGACATCTTGTGGACGCCTGACGTTAGAGAGTTAAATGAAGAAGTGGCAGCTAGGGGACTGAAGTTTTTGAACTGGTTGTGGACTCGTAAAGAGAAAGACATTGCAATTGTTTCGCACAGTGGATTCTTGTTTCATACCTTGAGTGCTTTTGGAAATGATTGCCATCCGTCTATCAAGAGCGAAATATGCACTCACTTTGCTAATTGTGAGCTTCGTTCAGTGGTAATTGTCGATAGGAGTTTGATGGGGTCTGATTCTTCAACAACTAATTATCCTGGGAAGATACCTCGGCGGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

His_Phos_1

Protein Analysis

183

Amino Acids

20.2

Weight (kDa)

5.29

Isoelectric Point (pI)

42.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58280 AT1G58280 AT1G58280 AT1G58280 AT2G17280 AT2G17280
fragaria_vesca	FvH4_5g33820 FvH4_5g33820
malus_domestica	MD08G1208000.v1.1 MD09G1057400.v1.1 MD15G1392200.v1.1 MD15G1392500.v1.1
prunus_persica	Prupe.1G540200_v2.0.a1 Prupe.1G540200_v2.0.a1 Prupe.1G540200_v2.0.a1
pyrus_communis	pycom08g17990
rosa_chinensis	RchiOBHm_Chr7g0233171
rosa_laevigata	RLG00000001290
rosa_multiflora	Rmu_co8482001.1_g000001 Rmu_sc0002061.1_g000001
rosa_roxburghii	Rroxscaffold_3G00227550 Rroxscaffold_5G00373270
rosa_rugosa	Rorug07G0279300 Rorug07G0279400
rosa_samantha	Rh3BG315600 Rh7AG435100 Rh7BG407500 Rh7CG454100 Rh7DG422900
rosa_wichuraiana	Rw7G035790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	541
AcuI	CTGAAG	1 cut(s)	329
AcyI	GRCGYC	1 cut(s)	263
AfaI	GTAC	1 cut(s)	57
AgsI	TTSAA	3 cut(s)	108, 319, 510
AjnI	CCWGG	1 cut(s)	523
AluBI	AGCT	3 cut(s)	142, 299, 460
AluI	AGCT	3 cut(s)	142, 299, 460
AoxI	GGCC	2 cut(s)	203, 543
ApeKI	GCWGC	1 cut(s)	296
AspS9I	GGNCC	1 cut(s)	543
AsuC2I	CCSGG	1 cut(s)	149
AsuHPI	GGTGA	1 cut(s)	41
BbvI	GCAGC	1 cut(s)	308
BccI	CCATC	3 cut(s)	102, 420, 487
BcgI	CGANNNNNNTGC	2 cut(s)	342, 376
BciT130I	CCWGG	1 cut(s)	525
BcnI	CCSGG	1 cut(s)	149
BfaI	CTAG	1 cut(s)	300
BisI	GCNGC	1 cut(s)	297
BlsI	GCNGC	1 cut(s)	298
Bme1390I	CCNGG	2 cut(s)	149, 525
BmgT120I	GGNCC	1 cut(s)	543
BmrFI	CCNGG	2 cut(s)	149, 525
BpuEI	CTTGAG	1 cut(s)	409
BpuMI	CCSGG	1 cut(s)	149
BsaBI	GATNNNNATC	1 cut(s)	411
BsaHI	GRCGYC	1 cut(s)	263
BsaJI	CCNNGG	2 cut(s)	524, 536
Bse1I	ACTGG	1 cut(s)	326
Bse3DI	GCAATG	1 cut(s)	348
Bse8I	GATNNNNATC	1 cut(s)	411
BseBI	CCWGG	1 cut(s)	525
BseDI	CCNNGG	2 cut(s)	524, 536
BseGI	GGATG	4 cut(s)	94, 166, 253, 412
BseJI	GATNNNNATC	1 cut(s)	411
BseMI	GCAATG	1 cut(s)	348
BseNI	ACTGG	1 cut(s)	326
BseRI	GAGGAG	1 cut(s)	51
BseXI	GCAGC	1 cut(s)	308
BshFI	GGCC	2 cut(s)	205, 545
BsiSI	CCGG	1 cut(s)	148
BslFI	GGGAC	1 cut(s)	318
BsmFI	GGGAC	1 cut(s)	318
BsnI	GGCC	2 cut(s)	205, 545
BspACI	CCGC	1 cut(s)	541
BspANI	GGCC	2 cut(s)	205, 545
BsrDI	GCAATG	1 cut(s)	348
BsrI	ACTGG	1 cut(s)	326
BssECI	CCNNGG	2 cut(s)	524, 536
BssNI	GRCGYC	1 cut(s)	263
Bst2UI	CCWGG	1 cut(s)	525
Bst4CI	ACNGT	2 cut(s)	89, 368
BstACI	GRCGYC	1 cut(s)	263
BstC8I	GCNNGC	1 cut(s)	543
BstF5I	GGATG	4 cut(s)	94, 166, 253, 412
BstMWI	GCNNNNNNNGC	1 cut(s)	435
BstNI	CCWGG	1 cut(s)	525
BstSCI	CCNGG	2 cut(s)	147, 523
BstV1I	GCAGC	1 cut(s)	308
BsuRI	GGCC	2 cut(s)	205, 545
BtsCI	GGATG	4 cut(s)	94, 166, 253, 412
BtsI	GCAGTG	2 cut(s)	18, 141
BtsIMutI	CAGTG	6 cut(s)	18, 94, 141, 230, 373, 474
Cac8I	GCNNGC	1 cut(s)	543
Cfr13I	GGNCC	1 cut(s)	543
CseI	GACGC	1 cut(s)	271
Csp6I	GTAC	1 cut(s)	56
CviAII	CATG	1 cut(s)	171
CviJI	RGCY	5 cut(s)	142, 205, 299, 460, 545
CviKI_1	RGCY	5 cut(s)	142, 205, 299, 460, 545
CviQI	GTAC	1 cut(s)	56
Eco57I	CTGAAG	1 cut(s)	329
EcoRII	CCWGG	1 cut(s)	523
FaeI	CATG	1 cut(s)	174
FaiI	YATR	5 cut(s)	37, 131, 172, 384, 436
FaqI	GGGAC	1 cut(s)	318
FatI	CATG	1 cut(s)	170
FauI	CCCGC	1 cut(s)	534
Fnu4HI	GCNGC	1 cut(s)	297
FokI	GGATG	4 cut(s)	81, 153, 260, 399
Fsp4HI	GCNGC	1 cut(s)	297
FspBI	CTAG	1 cut(s)	300
GluI	GCNGC	1 cut(s)	297
HaeIII	GGCC	2 cut(s)	205, 545
HapII	CCGG	1 cut(s)	148
HgaI	GACGC	1 cut(s)	271
Hin1I	GRCGYC	1 cut(s)	263
Hin1II	CATG	1 cut(s)	174
HinfI	GANTC	3 cut(s)	331, 372, 503
HpaII	CCGG	1 cut(s)	148
HphI	GGTGA	1 cut(s)	41
Hpy166II	GTNNAC	2 cut(s)	261, 330
Hpy188I	TCNGA	1 cut(s)	502
Hpy188III	TCNNGA	1 cut(s)	424
Hpy8I	GTNNAC	2 cut(s)	261, 330
HpyCH4III	ACNGT	2 cut(s)	89, 368
HpyCH4IV	ACGT	1 cut(s)	270
HpyCH4V	TGCA	6 cut(s)	4, 74, 101, 218, 353, 438
HpyF10VI	GCNNNNNNNGC	1 cut(s)	435
HpySE526I	ACGT	1 cut(s)	270
Hsp92I	GRCGYC	1 cut(s)	263
Hsp92II	CATG	1 cut(s)	174
LmnI	GCTCC	1 cut(s)	139
LpnPI	CCDG	8 cut(s)	66, 111, 161, 228, 279, 307, 510, 537
Lsp1109I	GCAGC	1 cut(s)	308
MaeI	CTAG	1 cut(s)	300
MaeII	ACGT	1 cut(s)	270
MaeIII	GTNAC	2 cut(s)	89, 173
MboII	GAAGA	3 cut(s)	299, 498, 541
MfeI	CAATTG	2 cut(s)	219, 354
MluCI	AATT	6 cut(s)	102, 219, 354, 451, 474, 517
MlyI	GAGTC	1 cut(s)	325
MnlI	CCTC	5 cut(s)	69, 72, 216, 238, 546
MseI	TTAA	1 cut(s)	281
MslI	CAYNNNNRTG	2 cut(s)	159, 171
MspI	CCGG	1 cut(s)	148
MspR9I	CCNGG	2 cut(s)	149, 525
MunI	CAATTG	2 cut(s)	219, 354
MvaI	CCWGG	1 cut(s)	525
MwoI	GCNNNNNNNGC	1 cut(s)	435
NciI	CCSGG	1 cut(s)	149
NlaIII	CATG	1 cut(s)	174
NmeAIII	GCCGAG	1 cut(s)	517
NmuCI	GTSAC	2 cut(s)	89, 173
PfeI	GAWTC	2 cut(s)	372, 503
PkrI	GCNGC	1 cut(s)	298
PleI	GAGTC	1 cut(s)	325
PpsI	GAGTC	1 cut(s)	325
Psp6I	CCWGG	1 cut(s)	523
PspGI	CCWGG	1 cut(s)	523
PspPI	GGNCC	1 cut(s)	543
RsaI	GTAC	1 cut(s)	57
RsaNI	GTAC	1 cut(s)	56
RseI	CAYNNNNRTG	2 cut(s)	159, 171
SaqAI	TTAA	1 cut(s)	281
SatI	GCNGC	1 cut(s)	297
Sau96I	GGNCC	1 cut(s)	543
SchI	GAGTC	1 cut(s)	325
ScrFI	CCNGG	2 cut(s)	149, 525
SetI	ASST	7 cut(s)	61, 144, 273, 301, 389, 462, 538
SmiMI	CAYNNNNRTG	2 cut(s)	159, 171
SmlI	CTYRAG	1 cut(s)	388
SmoI	CTYRAG	1 cut(s)	388
Sse9I	AATT	6 cut(s)	102, 219, 354, 451, 474, 517
SsiI	CCGC	1 cut(s)	541
SspMI	CTAG	1 cut(s)	300
StyD4I	CCNGG	2 cut(s)	147, 523
TaaI	ACNGT	2 cut(s)	89, 368
TaiI	ACGT	1 cut(s)	273
TaqI	TCGA	1 cut(s)	480
TasI	AATT	6 cut(s)	102, 219, 354, 451, 474, 517
TfiI	GAWTC	2 cut(s)	372, 503
Tru1I	TTAA	1 cut(s)	281
Tru9I	TTAA	1 cut(s)	281
TscAI	CASTG	6 cut(s)	18, 94, 141, 237, 373, 474
TseFI	GTSAC	2 cut(s)	89, 173
TseI	GCWGC	1 cut(s)	296
Tsp45I	GTSAC	2 cut(s)	89, 173
TspDTI	ATGAA	3 cut(s)	155, 300, 371
TspGWI	ACGGA	1 cut(s)	405
TspRI	CASTG	6 cut(s)	18, 94, 141, 237, 373, 474
XspI	CTAG	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.