Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0004925

Physical Location & Seq

Genomic Coordinates Forward (+)

54550274 .. 54555972

Gene Structure 5699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00373270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGGACGGCCCACGGTGCACGCTCATCTTCGATTTGGCTCGAGATTTGTACGCCGAGGAAGAGAGGGAGTTGCTTGTTGAACTTCGTATTCCTACCTCGGCCGCCGGGAACCACCATGTTGGTCGTTGGGCGGACCCATGGTTCCGCGTCGGGTCAAGGCAGGTGGAGCCACCGCAGCTCTTCCTCTCGGGAGAAAAGTACCATTCGGCTTACATGTCTTATGATCTTTTTGATGCACATTTTACCCTCTTGGCTGGCAACAGTACTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009987 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022622 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0050896 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0071944 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VWA_2 zf-RING_11 zf-RING_2

Protein Analysis

90

Amino Acids

10.31

Weight (kDa)

5.17

Isoelectric Point (pI)

46.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58280 AT1G58280 AT1G58280 AT1G58280 AT2G17280 AT2G17280
fragaria_vesca	FvH4_5g33820 FvH4_5g33820
malus_domestica	MD08G1208000.v1.1 MD09G1057400.v1.1 MD15G1392200.v1.1 MD15G1392500.v1.1
prunus_persica	Prupe.1G540200_v2.0.a1 Prupe.1G540200_v2.0.a1 Prupe.1G540200_v2.0.a1
pyrus_communis	pycom08g17990
rosa_chinensis	RchiOBHm_Chr7g0233171
rosa_laevigata	RLG00000001290
rosa_multiflora	Rmu_co8482001.1_g000001 Rmu_sc0002061.1_g000001
rosa_roxburghii	Rroxscaffold_3G00227550 Rroxscaffold_5G00373270
rosa_rugosa	Rorug07G0279300 Rorug07G0279400
rosa_samantha	Rh3BG315600 Rh7AG435100 Rh7BG407500 Rh7CG454100 Rh7DG422900
rosa_wichuraiana	Rw7G035790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	151
Acc36I	ACCTGC	1 cut(s)	151
AccII	CGCG	1 cut(s)	147
AciI	CCGC	4 cut(s)	102, 131, 145, 173
AcoI	YGGCCR	1 cut(s)	99
AfaI	GTAC	3 cut(s)	50, 200, 265
AflIII	ACRYGT	1 cut(s)	213
AgsI	TTSAA	1 cut(s)	80
AloI	GAACNNNNNNTCC	2 cut(s)	125, 157
AluBI	AGCT	1 cut(s)	178
AluI	AGCT	1 cut(s)	178
Alw21I	GWGCWC	1 cut(s)	20
Alw44I	GTGCAC	1 cut(s)	16
Ama87I	CYCGRG	2 cut(s)	39, 187
AoxI	GGCC	2 cut(s)	7, 99
ApaLI	GTGCAC	1 cut(s)	16
ApeKI	GCWGC	1 cut(s)	175
AspS9I	GGNCC	2 cut(s)	8, 133
AsuC2I	CCSGG	1 cut(s)	106
AvaI	CYCGRG	2 cut(s)	39, 187
AvaII	GGWCC	1 cut(s)	133
BaeGI	GKGCMC	1 cut(s)	20
Bbv12I	GWGCWC	1 cut(s)	20
BbvI	GCAGC	1 cut(s)	187
BceAI	ACGGC	1 cut(s)	22
BcnI	CCSGG	1 cut(s)	106
BfuAI	ACCTGC	1 cut(s)	151
BisI	GCNGC	2 cut(s)	102, 176
BlsI	GCNGC	2 cut(s)	103, 177
BmcAI	AGTACT	1 cut(s)	265
Bme1390I	CCNGG	1 cut(s)	106
Bme18I	GGWCC	1 cut(s)	133
BmeT110I	CYCGRG	2 cut(s)	39, 187
BmgT120I	GGNCC	2 cut(s)	8, 133
BmiI	GGNNCC	4 cut(s)	110, 135, 143, 168
BmrFI	CCNGG	1 cut(s)	106
BmsI	GCATC	1 cut(s)	223
BpuMI	CCSGG	1 cut(s)	106
BsaJI	CCNNGG	4 cut(s)	11, 54, 96, 137
BseDI	CCNNGG	4 cut(s)	11, 54, 96, 137
BseSI	GKGCMC	1 cut(s)	20
BseX3I	CGGCCG	1 cut(s)	99
BseXI	GCAGC	1 cut(s)	187
Bsh1236I	CGCG	1 cut(s)	147
Bsh1285I	CGRYCG	1 cut(s)	102
BshFI	GGCC	2 cut(s)	9, 101
BsiEI	CGRYCG	1 cut(s)	102
BsiHKAI	GWGCWC	1 cut(s)	20
BsiHKCI	CYCGRG	2 cut(s)	39, 187
BsiSI	CCGG	1 cut(s)	105
BsnI	GGCC	2 cut(s)	9, 101
BsoBI	CYCGRG	2 cut(s)	39, 187
Bsp1286I	GDGCHC	1 cut(s)	20
Bsp143I	GATC	1 cut(s)	223
Bsp19I	CCATGG	1 cut(s)	137
BspACI	CCGC	4 cut(s)	102, 131, 145, 173
BspANI	GGCC	2 cut(s)	9, 101
BspFNI	CGCG	1 cut(s)	147
BspLI	GGNNCC	4 cut(s)	110, 135, 143, 168
BspMI	ACCTGC	1 cut(s)	151
BspQI	GCTCTTC	1 cut(s)	185
BssECI	CCNNGG	4 cut(s)	11, 54, 96, 137
BssMI	GATC	1 cut(s)	223
BssT1I	CCWWGG	1 cut(s)	137
Bst4CI	ACNGT	2 cut(s)	15, 263
Bst6I	CTCTTC	2 cut(s)	54, 185
BstC8I	GCNNGC	2 cut(s)	20, 256
BstDSI	CCRYGG	2 cut(s)	11, 137
BstFNI	CGCG	1 cut(s)	147
BstKTI	GATC	1 cut(s)	226
BstMBI	GATC	1 cut(s)	223
BstMCI	CGRYCG	1 cut(s)	102
BstMWI	GCNNNNNNNGC	3 cut(s)	15, 166, 175
BstNSI	RCATGY	1 cut(s)	217
BstSCI	CCNGG	1 cut(s)	104
BstSLI	GKGCMC	1 cut(s)	20
BstUI	CGCG	1 cut(s)	147
BstV1I	GCAGC	1 cut(s)	187
BstXI	CCANNNNNNTGG	1 cut(s)	119
BstZI	CGGCCG	1 cut(s)	99
BsuRI	GGCC	2 cut(s)	9, 101
BtgI	CCRYGG	2 cut(s)	11, 137
BveI	ACCTGC	1 cut(s)	151
Cac8I	GCNNGC	2 cut(s)	20, 256
Cfr13I	GGNCC	2 cut(s)	8, 133
CseI	GACGC	1 cut(s)	136
Csp6I	GTAC	3 cut(s)	49, 199, 264
CspCI	CAANNNNNGTGG	2 cut(s)	144, 179
CviAII	CATG	3 cut(s)	116, 138, 214
CviJI	RGCY	7 cut(s)	9, 38, 101, 169, 178, 209, 254
CviKI_1	RGCY	7 cut(s)	9, 38, 101, 169, 178, 209, 254
CviQI	GTAC	3 cut(s)	49, 199, 264
DpnI	GATC	1 cut(s)	225
DpnII	GATC	1 cut(s)	223
EaeI	YGGCCR	1 cut(s)	99
EagI	CGGCCG	1 cut(s)	99
Eam1104I	CTCTTC	2 cut(s)	54, 185
EarI	CTCTTC	2 cut(s)	54, 185
EciI	GGCGGA	1 cut(s)	146
EclXI	CGGCCG	1 cut(s)	99
Eco130I	CCWWGG	1 cut(s)	137
Eco47I	GGWCC	1 cut(s)	133
Eco52I	CGGCCG	1 cut(s)	99
Eco88I	CYCGRG	2 cut(s)	39, 187
EcoT14I	CCWWGG	1 cut(s)	137
ErhI	CCWWGG	1 cut(s)	137
FaeI	CATG	3 cut(s)	119, 141, 217
FaiI	YATR	4 cut(s)	117, 139, 215, 222
FatI	CATG	3 cut(s)	115, 137, 213
Fnu4HI	GCNGC	2 cut(s)	102, 176
Fsp4HI	GCNGC	2 cut(s)	102, 176
GluI	GCNGC	2 cut(s)	102, 176
HaeIII	GGCC	2 cut(s)	9, 101
HapII	CCGG	1 cut(s)	105
HgaI	GACGC	1 cut(s)	136
Hin1II	CATG	3 cut(s)	119, 141, 217
HpaII	CCGG	1 cut(s)	105
Hpy166II	GTNNAC	1 cut(s)	18
Hpy188III	TCNNGA	2 cut(s)	41, 189
Hpy8I	GTNNAC	1 cut(s)	18
Hpy99I	CGWCG	1 cut(s)	152
HpyCH4III	ACNGT	2 cut(s)	15, 263
HpyCH4V	TGCA	2 cut(s)	18, 236
HpyF10VI	GCNNNNNNNGC	3 cut(s)	15, 166, 175
Hsp92II	CATG	3 cut(s)	119, 141, 217
Kzo9I	GATC	1 cut(s)	223
LguI	GCTCTTC	1 cut(s)	185
LmnI	GCTCC	1 cut(s)	166
LpnPI	CCDG	3 cut(s)	118, 146, 240
Lsp1109I	GCAGC	1 cut(s)	187
LweI	GCATC	1 cut(s)	223
MalI	GATC	1 cut(s)	225
MboI	GATC	1 cut(s)	223
MboII	GAAGA	3 cut(s)	19, 71, 172
MhlI	GDGCHC	1 cut(s)	20
MnlI	CCTC	5 cut(s)	49, 57, 106, 194, 257
MspI	CCGG	1 cut(s)	105
MspR9I	CCNGG	1 cut(s)	106
MvnI	CGCG	1 cut(s)	147
MwoI	GCNNNNNNNGC	3 cut(s)	15, 166, 175
NciI	CCSGG	1 cut(s)	106
NcoI	CCATGG	1 cut(s)	137
NdeII	GATC	1 cut(s)	223
NlaIII	CATG	3 cut(s)	119, 141, 217
NlaIV	GGNNCC	4 cut(s)	110, 135, 143, 168
NmeAIII	GCCGAG	2 cut(s)	77, 79
NspI	RCATGY	1 cut(s)	217
PaeR7I	CTCGAG	1 cut(s)	39
PaqCI	CACCTGC	1 cut(s)	151
PciI	ACATGT	1 cut(s)	213
PciSI	GCTCTTC	1 cut(s)	185
PkrI	GCNGC	2 cut(s)	103, 177
PscI	ACATGT	1 cut(s)	213
PspN4I	GGNNCC	4 cut(s)	110, 135, 143, 168
PspPI	GGNCC	2 cut(s)	8, 133
RsaI	GTAC	3 cut(s)	50, 200, 265
RsaNI	GTAC	3 cut(s)	49, 199, 264
SapI	GCTCTTC	1 cut(s)	185
SatI	GCNGC	2 cut(s)	102, 176
Sau3AI	GATC	1 cut(s)	223
Sau96I	GGNCC	2 cut(s)	8, 133
ScaI	AGTACT	1 cut(s)	265
ScrFI	CCNGG	1 cut(s)	106
SduI	GDGCHC	1 cut(s)	20
SetI	ASST	3 cut(s)	98, 165, 180
SfaNI	GCATC	1 cut(s)	223
Sfr274I	CTCGAG	1 cut(s)	39
SinI	GGWCC	1 cut(s)	133
SlaI	CTCGAG	1 cut(s)	39
SmlI	CTYRAG	1 cut(s)	39
SmoI	CTYRAG	1 cut(s)	39
SsiI	CCGC	4 cut(s)	102, 131, 145, 173
StyD4I	CCNGG	1 cut(s)	104
StyI	CCWWGG	1 cut(s)	137
TaaI	ACNGT	2 cut(s)	15, 263
TaqI	TCGA	2 cut(s)	30, 40
TatI	WGTACW	1 cut(s)	263
TauI	GCSGC	1 cut(s)	104
TseI	GCWGC	1 cut(s)	175
VneI	GTGCAC	1 cut(s)	16
VpaK11BI	GGWCC	1 cut(s)	133
XceI	RCATGY	1 cut(s)	217
XhoI	CTCGAG	1 cut(s)	39
ZrmI	AGTACT	1 cut(s)	265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.