Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0004925

Physical Location & Seq

Genomic Coordinates Reverse (-)

53738777 .. 53745862

Gene Structure 7086 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G035790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGACCGTTTCCATTTCCTCTATATATACCCCCCACATCTCACATATTCCCCTCTCTGTCCCCACTCAGTTTTCAAAGTTGCCAAAATCTAACCATTCAATCCTCGTCTGCTTCTCTTCTCCACCAGATATGGATGCCGCAGGTGCCACAACTCTCTACCCTTTGCACCGGTCGAAAACTATTCACCTGGTGAGGCATGCACAAGGGATTCACAATGTGGAAGGAGAAAAGGACCATTCGGCTTACATGTCTTTTGATCTTTTTGATGCACATCTTACCCCTCTTGGCTGGCAACAGGTTGATAATCTGCACAAGCATGTTCGAGCATGTGGACTTGCAAAAAAAATTGATTTAGTGATCACATCTCCTTTGCTAAGGACCATGCAGACAGCAGTGGGTGTCTTTGGTGGTGAAGCATACACAGATGGGATAAATGTACCCCCTCTAATGGTTGAAAATGCTGGGAACAGCAGCCATGCTGCAATTTCAAGTCTAAACTGCCCACCATTTGTAGCAGTTGAACTATGCCGGGAACATTTGGGTGTTCATCCATGTGATAAGAGAAGAAGCATTAGCGAGTATAGGCCTCTTTTCCCTGCAATTGATTTCTCACTGATAGAGAATAATGATGACATTTTGTGGACGCCTGACATAAGAGAGAAGAATGAAGAAGTTGCAGCTAGAGGACTGAAGTTTTTGAACTGGTTGTGGACACGTAAAGAAAAGAATATTGCAATTGTTACCCATAGTGGATTCTTGTACCACACCTTGAGTGCTTTTGGAAATGATTGCCATTCATCCATTAAGAGTGAAATATCCACGCACTTTGCCAATTGCGAGCTCCGTTCCATGGTAATTGTTGATAGGGGTTTGATAGGGTCAAATTCCACCTCAGCAACTAATTATCCTGGAAAAATTCCTCCTGGGCTTGATCTTCCTAGCGATGTCGCAGATGAGAAGCATCCAGTTTCCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

His_Phos_1

Protein Analysis

325

Amino Acids

35.84

Weight (kDa)

6.54

Isoelectric Point (pI)

42.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58280 AT1G58280 AT1G58280 AT1G58280 AT2G17280 AT2G17280
fragaria_vesca	FvH4_5g33820 FvH4_5g33820
malus_domestica	MD08G1208000.v1.1 MD09G1057400.v1.1 MD15G1392200.v1.1 MD15G1392500.v1.1
prunus_persica	Prupe.1G540200_v2.0.a1 Prupe.1G540200_v2.0.a1 Prupe.1G540200_v2.0.a1
pyrus_communis	pycom08g17990
rosa_chinensis	RchiOBHm_Chr7g0233171
rosa_laevigata	RLG00000001290
rosa_multiflora	Rmu_co8482001.1_g000001 Rmu_sc0002061.1_g000001
rosa_roxburghii	Rroxscaffold_3G00227550 Rroxscaffold_5G00373270
rosa_rugosa	Rorug07G0279300 Rorug07G0279400
rosa_samantha	Rh3BG315600 Rh7AG435100 Rh7BG407500 Rh7CG454100 Rh7DG422900
rosa_wichuraiana	Rw7G035790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	131
Acc36I	ACCTGC	1 cut(s)	131
AccB1I	GGYRCC	1 cut(s)	143
AciI	CCGC	1 cut(s)	138
AcsI	RAATTY	2 cut(s)	883, 915
AcuI	CTGAAG	1 cut(s)	710
AcyI	GRCGYC	1 cut(s)	644
AdeI	CACNNNGTG	2 cut(s)	190, 217
AfaI	GTAC	2 cut(s)	438, 761
AfiI	CCNNNNNNNGG	2 cut(s)	448, 850
AflIII	ACRYGT	2 cut(s)	246, 713
AgeI	ACCGGT	1 cut(s)	168
AgsI	TTSAA	6 cut(s)	75, 99, 455, 489, 521, 700
AjnI	CCWGG	3 cut(s)	186, 907, 922
AluBI	AGCT	2 cut(s)	680, 841
AluI	AGCT	2 cut(s)	680, 841
Alw21I	GWGCWC	1 cut(s)	843
AoxI	GGCC	1 cut(s)	584
ApeKI	GCWGC	3 cut(s)	471, 479, 677
ApoI	RAATTY	2 cut(s)	883, 915
AsiGI	ACCGGT	1 cut(s)	168
AspS9I	GGNCC	2 cut(s)	232, 378
AsuC2I	CCSGG	1 cut(s)	530
AsuHPI	GGTGA	3 cut(s)	176, 202, 422
AvaII	GGWCC	2 cut(s)	232, 378
BanI	GGYRCC	1 cut(s)	143
BanII	GRGCYC	1 cut(s)	843
Bbv12I	GWGCWC	1 cut(s)	843
BbvCI	CCTCAGC	1 cut(s)	892
BbvI	GCAGC	3 cut(s)	466, 483, 689
BccI	CCATC	1 cut(s)	419
BciT130I	CCWGG	3 cut(s)	188, 909, 924
BclI	TGATCA	1 cut(s)	357
BcnI	CCSGG	1 cut(s)	530
BfaI	CTAG	2 cut(s)	681, 939
BfuAI	ACCTGC	1 cut(s)	131
BisI	GCNGC	4 cut(s)	138, 472, 480, 678
BlsI	GCNGC	4 cut(s)	139, 473, 481, 679
Bme1390I	CCNGG	4 cut(s)	188, 530, 909, 924
Bme18I	GGWCC	2 cut(s)	232, 378
BmgT120I	GGNCC	2 cut(s)	232, 378
BmiI	GGNNCC	1 cut(s)	145
BmrFI	CCNGG	4 cut(s)	188, 530, 909, 924
BmsI	GCATC	3 cut(s)	124, 256, 970
Bpu10I	CCTNAGC	2 cut(s)	374, 892
BpuEI	CTTGAG	1 cut(s)	790
BpuMI	CCSGG	1 cut(s)	530
BsaAI	YACGTR	1 cut(s)	716
BsaBI	GATNNNNATC	1 cut(s)	270
BsaHI	GRCGYC	1 cut(s)	644
BsaJI	CCNNGG	2 cut(s)	849, 923
BsaWI	WCCGGW	1 cut(s)	168
Bsc4I	CCNNNNNNNGG	2 cut(s)	448, 850
Bse118I	RCCGGY	1 cut(s)	168
Bse1I	ACTGG	2 cut(s)	707, 965
Bse8I	GATNNNNATC	1 cut(s)	270
BseBI	CCWGG	3 cut(s)	188, 909, 924
BseDI	CCNNGG	2 cut(s)	849, 923
BseGI	GGATG	4 cut(s)	139, 547, 797, 961
BseJI	GATNNNNATC	1 cut(s)	270
BseLI	CCNNNNNNNGG	2 cut(s)	448, 850
BseMII	CTCAG	2 cut(s)	80, 906
BseNI	ACTGG	2 cut(s)	707, 965
BseXI	GCAGC	3 cut(s)	466, 483, 689
BseYI	CCCAGC	1 cut(s)	461
BsgI	GTGCAG	1 cut(s)	293
Bsh1285I	CGRYCG	1 cut(s)	173
BshFI	GGCC	1 cut(s)	586
BshNI	GGYRCC	1 cut(s)	143
BshTI	ACCGGT	1 cut(s)	168
BsiEI	CGRYCG	1 cut(s)	173
BsiHKAI	GWGCWC	1 cut(s)	843
BsiSI	CCGG	2 cut(s)	169, 529
BslFI	GGGAC	1 cut(s)	44
BslI	CCNNNNNNNGG	2 cut(s)	448, 850
BsmFI	GGGAC	1 cut(s)	44
BsnI	GGCC	1 cut(s)	586
Bsp1286I	GDGCHC	1 cut(s)	843
Bsp143I	GATC	3 cut(s)	256, 357, 931
Bsp19I	CCATGG	1 cut(s)	849
BspACI	CCGC	1 cut(s)	138
BspANI	GGCC	1 cut(s)	586
BspCNI	CTCAG	2 cut(s)	79, 905
BspLI	GGNNCC	1 cut(s)	145
BspMI	ACCTGC	1 cut(s)	131
BspT107I	GGYRCC	1 cut(s)	143
BsrFI	RCCGGY	1 cut(s)	168
BsrI	ACTGG	2 cut(s)	707, 965
BssAI	RCCGGY	1 cut(s)	168
BssECI	CCNNGG	2 cut(s)	849, 923
BssMI	GATC	3 cut(s)	256, 357, 931
BssNI	GRCGYC	1 cut(s)	644
BssT1I	CCWWGG	1 cut(s)	849
Bst2UI	CCWGG	3 cut(s)	188, 909, 924
Bst4CI	ACNGT	1 cut(s)	7
Bst6I	CTCTTC	1 cut(s)	121
BstACI	GRCGYC	1 cut(s)	644
BstBAI	YACGTR	1 cut(s)	716
BstC8I	GCNNGC	3 cut(s)	198, 290, 839
BstDEI	CTNAG	3 cut(s)	66, 374, 892
BstDSI	CCRYGG	1 cut(s)	849
BstF5I	GGATG	4 cut(s)	139, 547, 797, 961
BstKTI	GATC	3 cut(s)	259, 360, 934
BstMBI	GATC	3 cut(s)	256, 357, 931
BstMCI	CGRYCG	1 cut(s)	173
BstMWI	GCNNNNNNNGC	1 cut(s)	143
BstNI	CCWGG	3 cut(s)	188, 909, 924
BstNSI	RCATGY	4 cut(s)	200, 250, 320, 330
BstSCI	CCNGG	4 cut(s)	186, 528, 907, 922
BstV1I	GCAGC	3 cut(s)	466, 483, 689
BsuRI	GGCC	1 cut(s)	586
BtgI	CCRYGG	1 cut(s)	849
BtgZI	GCGATG	1 cut(s)	957
BtsCI	GGATG	4 cut(s)	139, 547, 797, 961
BtsI	GCAGTG	1 cut(s)	399
BtsIMutI	CAGTG	2 cut(s)	399, 611
BveI	ACCTGC	1 cut(s)	131
Cac8I	GCNNGC	3 cut(s)	198, 290, 839
Cfr10I	RCCGGY	1 cut(s)	168
Cfr13I	GGNCC	2 cut(s)	232, 378
CseI	GACGC	1 cut(s)	652
CsiI	ACCWGGT	1 cut(s)	186
Csp6I	GTAC	2 cut(s)	437, 760
CspAI	ACCGGT	1 cut(s)	168
CspCI	CAANNNNNGTGG	2 cut(s)	808, 843
CviAII	CATG	8 cut(s)	197, 247, 317, 327, 382, 476, 552, 850
CviJI	RGCY	7 cut(s)	242, 288, 474, 586, 680, 841, 928
CviKI_1	RGCY	7 cut(s)	242, 288, 474, 586, 680, 841, 928
CviQI	GTAC	2 cut(s)	437, 760
DdeI	CTNAG	3 cut(s)	66, 374, 892
DpnI	GATC	3 cut(s)	258, 359, 933
DpnII	GATC	3 cut(s)	256, 357, 931
DraIII	CACNNNGTG	2 cut(s)	190, 217
Eam1104I	CTCTTC	1 cut(s)	121
EarI	CTCTTC	1 cut(s)	121
Ecl136II	GAGCTC	1 cut(s)	841
Eco130I	CCWWGG	1 cut(s)	849
Eco147I	AGGCCT	1 cut(s)	586
Eco24I	GRGCYC	1 cut(s)	843
Eco47I	GGWCC	2 cut(s)	232, 378
Eco53kI	GAGCTC	1 cut(s)	841
Eco57I	CTGAAG	1 cut(s)	710
EcoICRI	GAGCTC	1 cut(s)	841
EcoRII	CCWGG	3 cut(s)	186, 907, 922
EcoT14I	CCWWGG	1 cut(s)	849
EcoT38I	GRGCYC	1 cut(s)	843
ErhI	CCWWGG	1 cut(s)	849
FaeI	CATG	8 cut(s)	200, 250, 320, 330, 385, 479, 555, 853
FaqI	GGGAC	1 cut(s)	44
FatI	CATG	8 cut(s)	196, 246, 316, 326, 381, 475, 551, 849
FbaI	TGATCA	1 cut(s)	357
Fnu4HI	GCNGC	4 cut(s)	138, 472, 480, 678
FokI	GGATG	4 cut(s)	146, 534, 784, 948
FriOI	GRGCYC	1 cut(s)	843
Fsp4HI	GCNGC	4 cut(s)	138, 472, 480, 678
FspBI	CTAG	2 cut(s)	681, 939
GluI	GCNGC	4 cut(s)	138, 472, 480, 678
GsaI	CCCAGC	1 cut(s)	465
HaeIII	GGCC	1 cut(s)	586
HapII	CCGG	2 cut(s)	169, 529
HgaI	GACGC	1 cut(s)	652
Hin1I	GRCGYC	1 cut(s)	644
Hin1II	CATG	8 cut(s)	200, 250, 320, 330, 385, 479, 555, 853
HinfI	GANTC	2 cut(s)	208, 753
HpaII	CCGG	2 cut(s)	169, 529
HphI	GGTGA	3 cut(s)	176, 202, 422
Hpy166II	GTNNAC	3 cut(s)	332, 642, 711
Hpy8I	GTNNAC	3 cut(s)	332, 642, 711
HpyAV	CCTTC	1 cut(s)	215
HpyCH4III	ACNGT	1 cut(s)	7
HpyCH4IV	ACGT	1 cut(s)	715
HpyF10VI	GCNNNNNNNGC	1 cut(s)	143
HpyF3I	CTNAG	3 cut(s)	66, 374, 892
HpySE526I	ACGT	1 cut(s)	715
Hsp92I	GRCGYC	1 cut(s)	644
Hsp92II	CATG	8 cut(s)	200, 250, 320, 330, 385, 479, 555, 853
Ksp22I	TGATCA	1 cut(s)	357
Kzo9I	GATC	3 cut(s)	256, 357, 931
LmnI	GCTCC	1 cut(s)	846
Lsp1109I	GCAGC	3 cut(s)	466, 483, 689
LweI	GCATC	3 cut(s)	124, 256, 970
MabI	ACCWGGT	1 cut(s)	186
MaeI	CTAG	2 cut(s)	681, 939
MaeII	ACGT	1 cut(s)	715
MaeIII	GTNAC	1 cut(s)	739
MalI	GATC	3 cut(s)	258, 359, 933
MboI	GATC	3 cut(s)	256, 357, 931
MboII	GAAGA	5 cut(s)	108, 576, 673, 680, 926
MfeI	CAATTG	3 cut(s)	600, 735, 832
MhlI	GDGCHC	1 cut(s)	843
MluCI	AATT	9 cut(s)	345, 483, 600, 735, 832, 855, 883, 901, 915
MseI	TTAA	1 cut(s)	804
MslI	CAYNNNNRTG	3 cut(s)	315, 540, 552
MspI	CCGG	2 cut(s)	169, 529
MspR9I	CCNGG	4 cut(s)	188, 530, 909, 924
MunI	CAATTG	3 cut(s)	600, 735, 832
MvaI	CCWGG	3 cut(s)	188, 909, 924
MwoI	GCNNNNNNNGC	1 cut(s)	143
NciI	CCSGG	1 cut(s)	530
NcoI	CCATGG	1 cut(s)	849
NdeII	GATC	3 cut(s)	256, 357, 931
NlaIII	CATG	8 cut(s)	200, 250, 320, 330, 385, 479, 555, 853
NlaIV	GGNNCC	1 cut(s)	145
NspI	RCATGY	4 cut(s)	200, 250, 320, 330
PaeI	GCATGC	1 cut(s)	200
PaqCI	CACCTGC	1 cut(s)	131
PceI	AGGCCT	1 cut(s)	586
PciI	ACATGT	1 cut(s)	246
PfeI	GAWTC	2 cut(s)	208, 753
PfoI	TCCNGGA	1 cut(s)	907
PinAI	ACCGGT	1 cut(s)	168
PkrI	GCNGC	4 cut(s)	139, 473, 481, 679
Ppu21I	YACGTR	1 cut(s)	716
PscI	ACATGT	1 cut(s)	246
Psp124BI	GAGCTC	1 cut(s)	843
Psp6I	CCWGG	3 cut(s)	186, 907, 922
PspFI	CCCAGC	1 cut(s)	461
PspGI	CCWGG	3 cut(s)	186, 907, 922
PspN4I	GGNNCC	1 cut(s)	145
PspPI	GGNCC	2 cut(s)	232, 378
RsaI	GTAC	2 cut(s)	438, 761
RsaNI	GTAC	2 cut(s)	437, 760
RseI	CAYNNNNRTG	3 cut(s)	315, 540, 552
SacI	GAGCTC	1 cut(s)	843
SaqAI	TTAA	1 cut(s)	804
SatI	GCNGC	4 cut(s)	138, 472, 480, 678
Sau3AI	GATC	3 cut(s)	256, 357, 931
Sau96I	GGNCC	2 cut(s)	232, 378
ScrFI	CCNGG	4 cut(s)	188, 530, 909, 924
SduI	GDGCHC	1 cut(s)	843
SetI	ASST	8 cut(s)	145, 189, 300, 682, 718, 770, 843, 893
SexAI	ACCWGGT	1 cut(s)	186
SfaNI	GCATC	3 cut(s)	124, 256, 970
SinI	GGWCC	2 cut(s)	232, 378
SmiMI	CAYNNNNRTG	3 cut(s)	315, 540, 552
SmlI	CTYRAG	1 cut(s)	769
SmoI	CTYRAG	1 cut(s)	769
SphI	GCATGC	1 cut(s)	200
Sse9I	AATT	9 cut(s)	345, 483, 600, 735, 832, 855, 883, 901, 915
SseBI	AGGCCT	1 cut(s)	586
SsiI	CCGC	1 cut(s)	138
SspI	AATATT	1 cut(s)	730
SspMI	CTAG	2 cut(s)	681, 939
SstI	GAGCTC	1 cut(s)	843
StuI	AGGCCT	1 cut(s)	586
StyD4I	CCNGG	4 cut(s)	186, 528, 907, 922
StyI	CCWWGG	1 cut(s)	849
TaaI	ACNGT	1 cut(s)	7
TaiI	ACGT	1 cut(s)	718
TaqI	TCGA	2 cut(s)	173, 322
TasI	AATT	9 cut(s)	345, 483, 600, 735, 832, 855, 883, 901, 915
TauI	GCSGC	1 cut(s)	140
TfiI	GAWTC	2 cut(s)	208, 753
Tru1I	TTAA	1 cut(s)	804
Tru9I	TTAA	1 cut(s)	804
TscAI	CASTG	2 cut(s)	399, 618
TseI	GCWGC	3 cut(s)	471, 479, 677
TspDTI	ATGAA	3 cut(s)	536, 681, 786
TspGWI	ACGGA	1 cut(s)	833
TspRI	CASTG	2 cut(s)	399, 618
VpaK11BI	GGWCC	2 cut(s)	232, 378
XapI	RAATTY	2 cut(s)	883, 915
XceI	RCATGY	4 cut(s)	200, 250, 320, 330
XspI	CTAG	2 cut(s)	681, 939

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.