Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0004925

Physical Location & Seq

Genomic Coordinates Reverse (-)

24549375 .. 24556306

Gene Structure 6932 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g33820.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGACCGTTTCCATTTCCTCTATATATACCCCCCACATCTCACTTATTCCCCTCTCTGTCCCCACCTCCACCTCTCCCAGTTCAAAGTTTCCAAAATCAAAGCATCATTCAATCCTCCTCTGCTTCTCTTCTCCACCAGATATGGATGCTGCAGGCGCAACAAGTCTCTACCCGTTGCACCGTTCGAAAACTATTCACTTGGTGAGGCATGCGCAAGGGATTCACAATGTGGAAGGAGAAAAGGACCATTTGGCTTACATGTCTCACGATCTTTTTGATGCACATCTTACCCCTCTTGGGTGGAAACAGGTTGATAATTTGCACAAGCATGTTCAAGCATGTGGACTTACAAAAAAACTTGATTTAGTGATCACATCTCCTTTGCTGAGGACCATGCAGACAGCAGTGGGTGTCTTCGGCGGTGAAGCATACACAGATGGGATAGATGTACCTCCTCTAATGGTTGAAAATGCAGGGAACAGCCTCCATGCTGCAATTTCAAGTCTAAACTGCCCACCATTTGTAGCAGTTGAGCTATGCCGGGAACATTTGGGTGTTCATCCATGTGATAAGAGAAGAAGCATTAGCGAGTATAGGCCTCTTTTCCCTGCAATTGATTTCTCACTGATAGAGAATGATGATGACATTTTGTGGACGCCTGACATAAGAGAGAAGAATGAAGAAGTTGCAGCTAGGGGACTGAAGTTTTTGAACTGGTTGTGGACACGTGAAGAAAAGAATATTGCAATTGTTACCCATAGCGGATTCCTGTACCACACCTTGAGTGCTTTTGGAAATGATTGTCATTCATCCATTAAGAATGAAATATCTACGCACTTTGCGAATTGCGAGCTTCGTTCCATGGTAATTGTTGATAGAGGTTTGATAGGGTCAAATTCTACCTCAGCAACCAATTATCCTGGAAAAAATCCTCAGGGGCTTGATCTTCCTAGTGACCTTGCGGATAAGAAGAATCCAGTTTCTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

His_Phos_1

Protein Analysis

330

Amino Acids

36.28

Weight (kDa)

6.43

Isoelectric Point (pI)

43.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58280 AT1G58280 AT1G58280 AT1G58280 AT2G17280 AT2G17280
fragaria_vesca	FvH4_5g33820 FvH4_5g33820
malus_domestica	MD08G1208000.v1.1 MD09G1057400.v1.1 MD15G1392200.v1.1 MD15G1392500.v1.1
prunus_persica	Prupe.1G540200_v2.0.a1 Prupe.1G540200_v2.0.a1 Prupe.1G540200_v2.0.a1
pyrus_communis	pycom08g17990
rosa_chinensis	RchiOBHm_Chr7g0233171
rosa_laevigata	RLG00000001290
rosa_multiflora	Rmu_co8482001.1_g000001 Rmu_sc0002061.1_g000001
rosa_roxburghii	Rroxscaffold_3G00227550 Rroxscaffold_5G00373270
rosa_rugosa	Rorug07G0279300 Rorug07G0279400
rosa_samantha	Rh3BG315600 Rh7AG435100 Rh7BG407500 Rh7CG454100 Rh7DG422900
rosa_wichuraiana	Rw7G035790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	213
AciI	CCGC	3 cut(s)	420, 762, 962
AcsI	RAATTY	1 cut(s)	895
AcuI	CTGAAG	1 cut(s)	722
AcvI	CACGTG	1 cut(s)	728
AcyI	GRCGYC	1 cut(s)	656
AdeI	CACNNNGTG	2 cut(s)	202, 229
AfaI	GTAC	2 cut(s)	450, 773
AfiI	CCNNNNNNNGG	1 cut(s)	297
AflIII	ACRYGT	2 cut(s)	258, 725
AgsI	TTSAA	6 cut(s)	84, 111, 335, 467, 501, 712
AjnI	CCWGG	1 cut(s)	919
AluBI	AGCT	3 cut(s)	535, 692, 853
AluI	AGCT	3 cut(s)	535, 692, 853
Alw26I	GTCTC	2 cut(s)	170, 267
AoxI	GGCC	1 cut(s)	596
ApeKI	GCWGC	3 cut(s)	149, 491, 689
ApoI	RAATTY	1 cut(s)	895
AspLEI	GCGC	2 cut(s)	158, 214
AspS9I	GGNCC	2 cut(s)	244, 390
AsuC2I	CCSGG	1 cut(s)	542
AsuHPI	GGTGA	2 cut(s)	214, 434
AsuII	TTCGAA	1 cut(s)	185
AvaII	GGWCC	2 cut(s)	244, 390
AxyI	CCTNAGG	1 cut(s)	933
BbrPI	CACGTG	1 cut(s)	728
BbsI	GAAGAC	1 cut(s)	406
BbvCI	CCTCAGC	2 cut(s)	386, 904
BbvI	GCAGC	3 cut(s)	136, 478, 701
BccI	CCATC	1 cut(s)	431
BciT130I	CCWGG	1 cut(s)	921
BclI	TGATCA	1 cut(s)	369
BcnI	CCSGG	1 cut(s)	542
BcoDI	GTCTC	2 cut(s)	170, 267
BfaI	CTAG	2 cut(s)	693, 951
BfmI	CTRYAG	1 cut(s)	150
BisI	GCNGC	3 cut(s)	150, 492, 690
BlsI	GCNGC	3 cut(s)	151, 493, 691
Bme1390I	CCNGG	2 cut(s)	542, 921
Bme18I	GGWCC	2 cut(s)	244, 390
BmgT120I	GGNCC	2 cut(s)	244, 390
BmrFI	CCNGG	2 cut(s)	542, 921
BmrI	ACTGGG	1 cut(s)	72
BmsI	GCATC	3 cut(s)	112, 136, 268
BmuI	ACTGGG	1 cut(s)	72
BpiI	GAAGAC	1 cut(s)	406
Bpu10I	CCTNAGC	2 cut(s)	386, 904
Bpu14I	TTCGAA	1 cut(s)	185
BpuEI	CTTGAG	1 cut(s)	802
BpuMI	CCSGG	1 cut(s)	542
BsaAI	YACGTR	1 cut(s)	728
BsaBI	GATNNNNATC	1 cut(s)	282
BsaHI	GRCGYC	1 cut(s)	656
BsaJI	CCNNGG	1 cut(s)	861
Bsc4I	CCNNNNNNNGG	1 cut(s)	297
Bse1I	ACTGG	3 cut(s)	78, 719, 977
Bse21I	CCTNAGG	1 cut(s)	933
Bse8I	GATNNNNATC	1 cut(s)	282
BseBI	CCWGG	1 cut(s)	921
BseDI	CCNNGG	1 cut(s)	861
BseGI	GGATG	3 cut(s)	151, 559, 809
BseJI	GATNNNNATC	1 cut(s)	282
BseLI	CCNNNNNNNGG	1 cut(s)	297
BseMII	CTCAG	3 cut(s)	377, 918, 947
BseNI	ACTGG	3 cut(s)	78, 719, 977
BseRI	GAGGAG	2 cut(s)	107, 444
BseXI	GCAGC	3 cut(s)	136, 478, 701
BshFI	GGCC	1 cut(s)	598
BsiSI	CCGG	1 cut(s)	541
BslFI	GGGAC	2 cut(s)	44, 711
BslI	CCNNNNNNNGG	1 cut(s)	297
BsmAI	GTCTC	2 cut(s)	170, 267
BsmFI	GGGAC	2 cut(s)	44, 711
BsnI	GGCC	1 cut(s)	598
Bsp119I	TTCGAA	1 cut(s)	185
Bsp143I	GATC	3 cut(s)	268, 369, 943
Bsp19I	CCATGG	1 cut(s)	861
BspACI	CCGC	3 cut(s)	420, 762, 962
BspANI	GGCC	1 cut(s)	598
BspCNI	CTCAG	3 cut(s)	378, 917, 946
BspMAI	CTGCAG	1 cut(s)	154
BspT104I	TTCGAA	1 cut(s)	185
BsrI	ACTGG	3 cut(s)	78, 719, 977
BssECI	CCNNGG	1 cut(s)	861
BssMI	GATC	3 cut(s)	268, 369, 943
BssNI	GRCGYC	1 cut(s)	656
BssT1I	CCWWGG	1 cut(s)	861
Bst2UI	CCWGG	1 cut(s)	921
Bst4CI	ACNGT	2 cut(s)	7, 182
Bst6I	CTCTTC	1 cut(s)	133
BstACI	GRCGYC	1 cut(s)	656
BstBAI	YACGTR	1 cut(s)	728
BstBI	TTCGAA	1 cut(s)	185
BstC8I	GCNNGC	3 cut(s)	154, 210, 851
BstDEI	CTNAG	4 cut(s)	386, 904, 933, 984
BstDSI	CCRYGG	1 cut(s)	861
BstF5I	GGATG	3 cut(s)	151, 559, 809
BstHHI	GCGC	2 cut(s)	158, 214
BstKTI	GATC	3 cut(s)	271, 372, 946
BstMAI	GTCTC	2 cut(s)	170, 267
BstMBI	GATC	3 cut(s)	268, 369, 943
BstMWI	GCNNNNNNNGC	1 cut(s)	155
BstNI	CCWGG	1 cut(s)	921
BstNSI	RCATGY	4 cut(s)	212, 262, 332, 342
BstSCI	CCNGG	2 cut(s)	540, 919
BstSFI	CTRYAG	1 cut(s)	150
BstV1I	GCAGC	3 cut(s)	136, 478, 701
BstV2I	GAAGAC	1 cut(s)	406
Bsu36I	CCTNAGG	1 cut(s)	933
BsuRI	GGCC	1 cut(s)	598
BtgI	CCRYGG	1 cut(s)	861
BtsCI	GGATG	3 cut(s)	151, 559, 809
BtsI	GCAGTG	1 cut(s)	411
BtsIMutI	CAGTG	2 cut(s)	411, 623
Cac8I	GCNNGC	3 cut(s)	154, 210, 851
CfoI	GCGC	2 cut(s)	158, 214
Cfr13I	GGNCC	2 cut(s)	244, 390
CseI	GACGC	1 cut(s)	664
Csp6I	GTAC	2 cut(s)	449, 772
CviAII	CATG	8 cut(s)	209, 259, 329, 339, 394, 488, 564, 862
CviJI	RGCY	7 cut(s)	254, 483, 535, 598, 692, 853, 940
CviKI_1	RGCY	7 cut(s)	254, 483, 535, 598, 692, 853, 940
CviQI	GTAC	2 cut(s)	449, 772
DdeI	CTNAG	4 cut(s)	386, 904, 933, 984
DpnI	GATC	3 cut(s)	270, 371, 945
DpnII	GATC	3 cut(s)	268, 369, 943
DraIII	CACNNNGTG	2 cut(s)	202, 229
Eam1104I	CTCTTC	1 cut(s)	133
EarI	CTCTTC	1 cut(s)	133
Eco130I	CCWWGG	1 cut(s)	861
Eco147I	AGGCCT	1 cut(s)	598
Eco47I	GGWCC	2 cut(s)	244, 390
Eco57I	CTGAAG	1 cut(s)	722
Eco72I	CACGTG	1 cut(s)	728
Eco81I	CCTNAGG	1 cut(s)	933
EcoRII	CCWGG	1 cut(s)	919
EcoT14I	CCWWGG	1 cut(s)	861
ErhI	CCWWGG	1 cut(s)	861
FaeI	CATG	8 cut(s)	212, 262, 332, 342, 397, 491, 567, 865
FaqI	GGGAC	2 cut(s)	44, 711
FatI	CATG	8 cut(s)	208, 258, 328, 338, 393, 487, 563, 861
FbaI	TGATCA	1 cut(s)	369
Fnu4HI	GCNGC	3 cut(s)	150, 492, 690
FokI	GGATG	3 cut(s)	158, 546, 796
Fsp4HI	GCNGC	3 cut(s)	150, 492, 690
FspBI	CTAG	2 cut(s)	693, 951
FspI	TGCGCA	1 cut(s)	213
GlaI	GCGC	2 cut(s)	157, 213
GluI	GCNGC	3 cut(s)	150, 492, 690
HaeIII	GGCC	1 cut(s)	598
HapII	CCGG	1 cut(s)	541
HgaI	GACGC	1 cut(s)	664
HhaI	GCGC	2 cut(s)	158, 214
Hin1I	GRCGYC	1 cut(s)	656
Hin1II	CATG	8 cut(s)	212, 262, 332, 342, 397, 491, 567, 865
Hin6I	GCGC	2 cut(s)	156, 212
HinP1I	GCGC	2 cut(s)	156, 212
HinfI	GANTC	3 cut(s)	220, 765, 973
HpaII	CCGG	1 cut(s)	541
HphI	GGTGA	2 cut(s)	214, 434
Hpy166II	GTNNAC	3 cut(s)	344, 654, 723
Hpy188III	TCNNGA	1 cut(s)	266
Hpy8I	GTNNAC	3 cut(s)	344, 654, 723
HpyAV	CCTTC	1 cut(s)	227
HpyCH4III	ACNGT	2 cut(s)	7, 182
HpyCH4IV	ACGT	1 cut(s)	727
HpyF10VI	GCNNNNNNNGC	1 cut(s)	155
HpyF3I	CTNAG	4 cut(s)	386, 904, 933, 984
HpySE526I	ACGT	1 cut(s)	727
Hsp92I	GRCGYC	1 cut(s)	656
Hsp92II	CATG	8 cut(s)	212, 262, 332, 342, 397, 491, 567, 865
HspAI	GCGC	2 cut(s)	156, 212
Ksp22I	TGATCA	1 cut(s)	369
Kzo9I	GATC	3 cut(s)	268, 369, 943
Lsp1109I	GCAGC	3 cut(s)	136, 478, 701
LweI	GCATC	3 cut(s)	112, 136, 268
MaeI	CTAG	2 cut(s)	693, 951
MaeII	ACGT	1 cut(s)	727
MaeIII	GTNAC	2 cut(s)	751, 953
MalI	GATC	3 cut(s)	270, 371, 945
MboI	GATC	3 cut(s)	268, 369, 943
MboII	GAAGA	8 cut(s)	120, 406, 588, 685, 692, 743, 938, 982
MfeI	CAATTG	2 cut(s)	612, 747
MluCI	AATT	8 cut(s)	316, 495, 612, 747, 844, 867, 895, 913
MseI	TTAA	1 cut(s)	816
MslI	CAYNNNNRTG	3 cut(s)	327, 552, 564
MspI	CCGG	1 cut(s)	541
MspR9I	CCNGG	2 cut(s)	542, 921
MunI	CAATTG	2 cut(s)	612, 747
MvaI	CCWGG	1 cut(s)	921
MwoI	GCNNNNNNNGC	1 cut(s)	155
NciI	CCSGG	1 cut(s)	542
NcoI	CCATGG	1 cut(s)	861
NdeII	GATC	3 cut(s)	268, 369, 943
NlaIII	CATG	8 cut(s)	212, 262, 332, 342, 397, 491, 567, 865
NmuCI	GTSAC	1 cut(s)	953
NsbI	TGCGCA	1 cut(s)	213
NspI	RCATGY	4 cut(s)	212, 262, 332, 342
NspV	TTCGAA	1 cut(s)	185
PaeI	GCATGC	1 cut(s)	212
PceI	AGGCCT	1 cut(s)	598
PciI	ACATGT	1 cut(s)	258
PcsI	WCGNNNNNNNCGW	1 cut(s)	839
PfeI	GAWTC	3 cut(s)	220, 765, 973
PfoI	TCCNGGA	1 cut(s)	919
PkrI	GCNGC	3 cut(s)	151, 493, 691
PmaCI	CACGTG	1 cut(s)	728
PmlI	CACGTG	1 cut(s)	728
Ppu21I	YACGTR	1 cut(s)	728
PscI	ACATGT	1 cut(s)	258
Psp6I	CCWGG	1 cut(s)	919
PspCI	CACGTG	1 cut(s)	728
PspGI	CCWGG	1 cut(s)	919
PspPI	GGNCC	2 cut(s)	244, 390
PstI	CTGCAG	1 cut(s)	154
RsaI	GTAC	2 cut(s)	450, 773
RsaNI	GTAC	2 cut(s)	449, 772
RseI	CAYNNNNRTG	3 cut(s)	327, 552, 564
SaqAI	TTAA	1 cut(s)	816
SatI	GCNGC	3 cut(s)	150, 492, 690
Sau3AI	GATC	3 cut(s)	268, 369, 943
Sau96I	GGNCC	2 cut(s)	244, 390
ScrFI	CCNGG	2 cut(s)	542, 921
SfaNI	GCATC	3 cut(s)	112, 136, 268
SfcI	CTRYAG	1 cut(s)	150
SfuI	TTCGAA	1 cut(s)	185
SinI	GGWCC	2 cut(s)	244, 390
SmiMI	CAYNNNNRTG	3 cut(s)	327, 552, 564
SmlI	CTYRAG	1 cut(s)	781
SmoI	CTYRAG	1 cut(s)	781
SphI	GCATGC	1 cut(s)	212
Sse9I	AATT	8 cut(s)	316, 495, 612, 747, 844, 867, 895, 913
SseBI	AGGCCT	1 cut(s)	598
SsiI	CCGC	3 cut(s)	420, 762, 962
SspI	AATATT	1 cut(s)	742
SspMI	CTAG	2 cut(s)	693, 951
StuI	AGGCCT	1 cut(s)	598
StyD4I	CCNGG	2 cut(s)	540, 919
StyI	CCWWGG	1 cut(s)	861
TaaI	ACNGT	2 cut(s)	7, 182
TaiI	ACGT	1 cut(s)	730
TaqI	TCGA	1 cut(s)	185
TasI	AATT	8 cut(s)	316, 495, 612, 747, 844, 867, 895, 913
TfiI	GAWTC	3 cut(s)	220, 765, 973
Tru1I	TTAA	1 cut(s)	816
Tru9I	TTAA	1 cut(s)	816
TscAI	CASTG	2 cut(s)	411, 630
TseFI	GTSAC	1 cut(s)	953
TseI	GCWGC	3 cut(s)	149, 491, 689
Tsp45I	GTSAC	1 cut(s)	953
TspDTI	ATGAA	4 cut(s)	548, 693, 798, 837
TspRI	CASTG	2 cut(s)	411, 630
VpaK11BI	GGWCC	2 cut(s)	244, 390
XapI	RAATTY	1 cut(s)	895
XceI	RCATGY	4 cut(s)	212, 262, 332, 342
XspI	CTAG	2 cut(s)	693, 951

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.