Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002625

Physical Location & Seq

Genomic Coordinates Reverse (-)

22470828 .. 22474187

Gene Structure 3360 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G61000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1323 bp

ATGTCAGCCTACGAGTACCCGAGGCTCTCTCGTTCCGACATTATCACGGCGCTCAAGGATGCTCAAATCGCTAGCGTTACAGAGACCGATCTCAAAACCCCAACTTCCGACTTTGTCTCCGAGCTTTACACCAGAATTCTTATCTATCTCGACGCCCTCGACGAAGAAGAGAAAGGGCAAGTTGATTTTGAGGCTTTGGAGCAATTGGAGAATCCAGATCATCATGCCACTTCAATGCAAGCTATGAAGCTTTATTGCAAAGTGAAAGATATGTTAGAAATGCTTGATTGTCCATTACCAATTAGTTTCAAGGATCTCTTACGCCCTGAATCATCCCGAACCGAGTTTTTCATCAGCGCACTTTTGAACTATGGTCTATACAAAGACTCGAAAATGGATCTTATAAGACCAAAGGCAGAAGAGTTGGGTCTCCTTGATGAGCAGCGAAAGCAGTGTGAGGCAAAGGTTGCTCAGTTGAATGCAGAGATTGGAGAATTTGATGAAGCCGTTGAGAGGGACTTACCTTTTGTCCAAGAGCTAGAAGCGAACATTGAACAACTGAATAAAAAAATATTGGAACTAAATAATCAGCAGATGTCACTGCGAGCTACCTTCCAGAAAATGAGAGAGAAGAGTACACAGATGGATAACGAGATTTCCAAAGCAGAGTTTGATCTTGTGGAAACTGTCCAAGAAAATGCAAACCTCCGCTCACAAATTGTTCAATCACCGGACAAATTGCAGGGAGCTTTAGAAGAGAAGAAACTAGTACTTGGGGAAACAAAGAAAGCTGAACAATCAGCAATGGTAACTTTCCAGGAAAAGGCTGCCATTCTTGAGGTTTTTGAAAAGGCCTTGAAGAAAATTTTAAAGTCATCTTCGCAACTGCAGTTAATAAACGAACAGGTAACCAATGCGAAAACGGTTGAGAAAGAATTCAAAGCTCTTAAAGATAAGCTGAGTGAGGATGGGGTAGCATACAAATCACTTGAGGCGAAAGTGGTTGAGCGGGAAAGAATAGTGGAACAGTTGAACGAATCATTGAAACAACTAGAGAAAGAAAAAGCAGTCATGTTTGATGATTGGACGAAACAGTTGAATGAATTAAAAGTGGAGGTTGAATCCAGAAGACGTGAACTTGAAACCAGGCAAACGAATGTTGAATCAGTAGTAGCTATGGTTGATGACAATACTGCGAAGACTAACCAGGTGAGACAGTCAGGAGAAGCTAAAGTTAAAAAACTAGCCGCTAAATATGAAGAGATCGTGAAGCAGTTTCATGAATACACGGTGTCGTTTGATGCGTTTCTACCAAGCCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000070 GO:0000228 GO:0000278 GO:0000280 GO:0000775 GO:0000776 GO:0000777 GO:0000778 GO:0000779 GO:0000780 GO:0000793 GO:0000794 GO:0000819 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005773 GO:0005774 GO:0005815 GO:0005816 GO:0005856 GO:0005886 GO:0006996 GO:0007049 GO:0007059 GO:0007080 GO:0007127 GO:0008150 GO:0008608 GO:0009987 GO:0015630 GO:0016020 GO:0016043 GO:0022402 GO:0022414 GO:0031090 GO:0031262 GO:0031617 GO:0031974 GO:0031981 GO:0032991 GO:0035974 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044437 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0048285 GO:0050000 GO:0051179 GO:0051234 GO:0051276 GO:0051303 GO:0051310 GO:0051315 GO:0051316 GO:0051321 GO:0051455 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0061982 GO:0070013 GO:0071840 GO:0071944 GO:0098588 GO:0098687 GO:0098805 GO:0098813 GO:0140013 GO:0140014 GO:1903046 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nuf2

Protein Analysis

440

Amino Acids

50.53

Weight (kDa)

4.93

Isoelectric Point (pI)

42.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nuf2	PF03800	4 - 141	2e-31	Nuf2 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61000
fragaria_vesca	FvH4_6g25020 FvH4_6g25020 FvH4_6g25020 FvH4_6g25020 FvH4_6g25020 FvH4_6g25020 FvH4_7g06682 FvH4_7g06682 FvH4_7g06682 FvH4_7g06682 FvH4_7g06682
malus_domestica	MD08G1232500.v1.1 MD08G1233000.v1.1 MD15G1425300.v1.1
prunus_persica	Prupe.1G570900_v2.0.a1 Prupe.1G570900_v2.0.a1
pyrus_communis	pycom08g20190 pycom15g37700
rosa_chinensis	RchiOBHm_Chr1g0336301 RchiOBHm_Chr7g0222021
rosa_laevigata	RLG00000002102 RLG00000029374
rosa_multiflora	Rmu_co8043290.1_g000001 Rmu_sc0001453.1_g000009 Rmu_sc0004325.1_g000003
rosa_roxburghii	Rroxscaffold_3G00237490 Rroxscaffold_4G00315800
rosa_rugosa	Rorug01G0123600 Rorug07G0205100
rosa_samantha	Rh1AG144300 Rh1BG113700 Rh1CG135800 Rh1DG150800 Rh7AG345600 Rh7BG336200 Rh7CG363300 Rh7DG343900
rosa_wichuraiana	Rw0G015220 Rw7G029310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	404
AccBSI	CCGCTC	2 cut(s)	711, 1009
AciI	CCGC	3 cut(s)	709, 1009, 1248
AclWI	GGATC	2 cut(s)	321, 405
AcsI	RAATTY	4 cut(s)	135, 494, 864, 935
AcyI	GRCGYC	1 cut(s)	153
AfaI	GTAC	3 cut(s)	17, 637, 771
AfiI	CCNNNNNNNGG	2 cut(s)	513, 823
AhlI	ACTAGT	1 cut(s)	766
AjiI	CACGTC	1 cut(s)	1133
AjnI	CCWGG	3 cut(s)	816, 1145, 1206
Alw26I	GTCTC	4 cut(s)	77, 121, 434, 1207
AlwI	GGATC	2 cut(s)	321, 405
Ama87I	CYCGRG	1 cut(s)	19
AoxI	GGCC	1 cut(s)	852
ApeKI	GCWGC	2 cut(s)	442, 827
ApoI	RAATTY	4 cut(s)	135, 494, 864, 935
ArsI	GACNNNNNNTTYG	2 cut(s)	509, 541
Asp700I	GAANNNNTTC	1 cut(s)	935
AspLEI	GCGC	2 cut(s)	52, 359
AsuHPI	GGTGA	2 cut(s)	720, 1222
AsuNHI	GCTAGC	1 cut(s)	71
AvaI	CYCGRG	1 cut(s)	19
BbsI	GAAGAC	2 cut(s)	1135, 1205
BbvI	GCAGC	2 cut(s)	454, 814
BccI	CCATC	2 cut(s)	637, 962
BceAI	ACGGC	2 cut(s)	63, 491
BciT130I	CCWGG	3 cut(s)	818, 1147, 1208
BcoDI	GTCTC	4 cut(s)	77, 121, 434, 1207
BcuI	ACTAGT	1 cut(s)	766
BfaI	CTAG	5 cut(s)	72, 539, 767, 1052, 1244
BfmI	CTRYAG	1 cut(s)	887
BfoI	RGCGCY	1 cut(s)	53
BisI	GCNGC	3 cut(s)	443, 828, 1248
BlsI	GCNGC	3 cut(s)	444, 829, 1249
BmcAI	AGTACT	1 cut(s)	771
Bme1390I	CCNGG	3 cut(s)	818, 1147, 1208
BmeT110I	CYCGRG	1 cut(s)	19
BmgBI	CACGTC	1 cut(s)	1133
BmrFI	CCNGG	3 cut(s)	818, 1147, 1208
BmsI	GCATC	2 cut(s)	49, 1291
BmtI	GCTAGC	1 cut(s)	75
BpiI	GAAGAC	2 cut(s)	1135, 1205
BplI	GAGNNNNNCTC	2 cut(s)	13, 45
BpuEI	CTTGAG	3 cut(s)	38, 857, 1010
BsaHI	GRCGYC	1 cut(s)	153
BsaI	GGTCTC	2 cut(s)	77, 434
BsaJI	CCNNGG	1 cut(s)	20
BsaWI	WCCGGW	1 cut(s)	730
BsaXI	ACNNNNNCTCC	2 cut(s)	101, 131
Bsc4I	CCNNNNNNNGG	2 cut(s)	513, 823
Bse3DI	GCAATG	1 cut(s)	810
BseBI	CCWGG	3 cut(s)	818, 1147, 1208
BseDI	CCNNGG	1 cut(s)	20
BseGI	GGATG	3 cut(s)	64, 332, 973
BseLI	CCNNNNNNNGG	2 cut(s)	513, 823
BseMI	GCAATG	1 cut(s)	810
BseMII	CTCAG	2 cut(s)	485, 950
BseXI	GCAGC	2 cut(s)	454, 814
BshFI	GGCC	1 cut(s)	854
BsiHKCI	CYCGRG	1 cut(s)	19
BsiSI	CCGG	1 cut(s)	731
BslFI	GGGAC	1 cut(s)	530
BslI	CCNNNNNNNGG	2 cut(s)	513, 823
BsmAI	GTCTC	4 cut(s)	77, 121, 434, 1207
BsmFI	GGGAC	1 cut(s)	530
BsmI	GAATGC	1 cut(s)	484
BsnI	GGCC	1 cut(s)	854
Bso31I	GGTCTC	2 cut(s)	77, 434
BsoBI	CYCGRG	1 cut(s)	19
Bsp143I	GATC	6 cut(s)	88, 217, 313, 397, 673, 1263
BspACI	CCGC	3 cut(s)	709, 1009, 1248
BspANI	GGCC	1 cut(s)	854
BspCNI	CTCAG	2 cut(s)	484, 951
BspHI	TCATGA	1 cut(s)	1279
BspMAI	CTGCAG	1 cut(s)	891
BspOI	GCTAGC	1 cut(s)	75
BspPI	GGATC	2 cut(s)	321, 405
BspTNI	GGTCTC	2 cut(s)	77, 434
BsrBI	CCGCTC	2 cut(s)	711, 1009
BsrDI	GCAATG	1 cut(s)	810
BssECI	CCNNGG	1 cut(s)	20
BssMI	GATC	6 cut(s)	88, 217, 313, 397, 673, 1263
BssNI	GRCGYC	1 cut(s)	153
Bst2UI	CCWGG	3 cut(s)	818, 1147, 1208
Bst4CI	ACNGT	6 cut(s)	688, 925, 1029, 1095, 1218, 1291
Bst6I	CTCTTC	5 cut(s)	162, 414, 626, 750, 1254
BstACI	GRCGYC	1 cut(s)	153
BstAPI	GCANNNNNTGC	1 cut(s)	467
BstC8I	GCNNGC	3 cut(s)	73, 240, 606
BstDEI	CTNAG	2 cut(s)	471, 959
BstEII	GGTNACC	1 cut(s)	907
BstF5I	GGATG	3 cut(s)	64, 332, 973
BstH2I	RGCGCY	1 cut(s)	53
BstHHI	GCGC	2 cut(s)	52, 359
BstKTI	GATC	6 cut(s)	91, 220, 316, 400, 676, 1266
BstMAI	GTCTC	4 cut(s)	77, 121, 434, 1207
BstMBI	GATC	6 cut(s)	88, 217, 313, 397, 673, 1263
BstMWI	GCNNNNNNNGC	3 cut(s)	68, 448, 467
BstNI	CCWGG	3 cut(s)	818, 1147, 1208
BstPI	GGTNACC	1 cut(s)	907
BstSCI	CCNGG	3 cut(s)	816, 1145, 1206
BstSFI	CTRYAG	1 cut(s)	887
BstV1I	GCAGC	2 cut(s)	454, 814
BstV2I	GAAGAC	2 cut(s)	1135, 1205
BstX2I	RGATCY	2 cut(s)	313, 397
BstYI	RGATCY	2 cut(s)	313, 397
BsuRI	GGCC	1 cut(s)	854
BtrI	CACGTC	1 cut(s)	1133
BtsCI	GGATG	3 cut(s)	64, 332, 973
BtsI	GCAGTG	2 cut(s)	458, 599
BtsIMutI	CAGTG	2 cut(s)	458, 599
Cac8I	GCNNGC	3 cut(s)	73, 240, 606
CciI	TCATGA	1 cut(s)	1279
CfoI	GCGC	2 cut(s)	52, 359
CseI	GACGC	1 cut(s)	161
CsiI	ACCWGGT	1 cut(s)	1206
Csp6I	GTAC	3 cut(s)	16, 636, 770
CviAII	CATG	3 cut(s)	224, 1072, 1280
CviQI	GTAC	3 cut(s)	16, 636, 770
DdeI	CTNAG	2 cut(s)	471, 959
DpnI	GATC	6 cut(s)	90, 219, 315, 399, 675, 1265
DpnII	GATC	6 cut(s)	88, 217, 313, 397, 673, 1263
DraI	TTTAAA	1 cut(s)	870
Eam1104I	CTCTTC	5 cut(s)	162, 414, 626, 750, 1254
EarI	CTCTTC	5 cut(s)	162, 414, 626, 750, 1254
Eco147I	AGGCCT	1 cut(s)	854
Eco31I	GGTCTC	2 cut(s)	77, 434
Eco88I	CYCGRG	1 cut(s)	19
Eco91I	GGTNACC	1 cut(s)	907
EcoO65I	GGTNACC	1 cut(s)	907
EcoRI	GAATTC	2 cut(s)	135, 935
EcoRII	CCWGG	3 cut(s)	816, 1145, 1206
FaeI	CATG	3 cut(s)	227, 1075, 1283
FalI	AAGNNNNNCTT	2 cut(s)	302, 334
FaqI	GGGAC	1 cut(s)	530
FatI	CATG	3 cut(s)	223, 1071, 1279
FauI	CCCGC	1 cut(s)	1002
Fnu4HI	GCNGC	3 cut(s)	443, 828, 1248
FokI	GGATG	3 cut(s)	71, 319, 980
Fsp4HI	GCNGC	3 cut(s)	443, 828, 1248
FspBI	CTAG	5 cut(s)	72, 539, 767, 1052, 1244
GlaI	GCGC	2 cut(s)	51, 358
GluI	GCNGC	3 cut(s)	443, 828, 1248
HaeII	RGCGCY	1 cut(s)	53
HaeIII	GGCC	1 cut(s)	854
HapII	CCGG	1 cut(s)	731
HgaI	GACGC	1 cut(s)	161
HhaI	GCGC	2 cut(s)	52, 359
Hin1I	GRCGYC	1 cut(s)	153
Hin1II	CATG	3 cut(s)	227, 1075, 1283
Hin6I	GCGC	2 cut(s)	50, 357
HinP1I	GCGC	2 cut(s)	50, 357
HindIII	AAGCTT	1 cut(s)	248
HinfI	GANTC	6 cut(s)	211, 329, 386, 1037, 1121, 1163
HpaII	CCGG	1 cut(s)	731
HphI	GGTGA	2 cut(s)	720, 1222
Hpy166II	GTNNAC	2 cut(s)	638, 1136
Hpy188I	TCNGA	3 cut(s)	37, 109, 121
Hpy188III	TCNNGA	9 cut(s)	149, 215, 336, 616, 836, 1125, 1221, 1267, 1280
Hpy8I	GTNNAC	2 cut(s)	638, 1136
Hpy99I	CGWCG	2 cut(s)	155, 164
HpyAV	CCTTC	1 cut(s)	622
HpyCH4III	ACNGT	6 cut(s)	688, 925, 1029, 1095, 1218, 1291
HpyCH4IV	ACGT	1 cut(s)	1132
HpyCH4V	TGCA	6 cut(s)	238, 258, 482, 701, 742, 889
HpyF10VI	GCNNNNNNNGC	3 cut(s)	68, 448, 467
HpyF3I	CTNAG	2 cut(s)	471, 959
HpySE526I	ACGT	1 cut(s)	1132
Hsp92I	GRCGYC	1 cut(s)	153
Hsp92II	CATG	3 cut(s)	227, 1075, 1283
HspAI	GCGC	2 cut(s)	50, 357
Kzo9I	GATC	6 cut(s)	88, 217, 313, 397, 673, 1263
LmnI	GCTCC	2 cut(s)	199, 746
Lsp1109I	GCAGC	2 cut(s)	454, 814
LweI	GCATC	2 cut(s)	49, 1291
MabI	ACCWGGT	1 cut(s)	1206
MaeI	CTAG	5 cut(s)	72, 539, 767, 1052, 1244
MaeII	ACGT	1 cut(s)	1132
MaeIII	GTNAC	4 cut(s)	76, 597, 808, 907
MalI	GATC	6 cut(s)	90, 219, 315, 399, 675, 1265
MbiI	CCGCTC	2 cut(s)	711, 1009
MboI	GATC	6 cut(s)	88, 217, 313, 397, 673, 1263
MfeI	CAATTG	1 cut(s)	203
MflI	RGATCY	2 cut(s)	313, 397
MluCI	AATT	9 cut(s)	135, 203, 300, 494, 717, 737, 864, 935, 1103
MlyI	GAGTC	1 cut(s)	380
MmeI	TCCRAC	2 cut(s)	60, 132
MroXI	GAANNNNTTC	1 cut(s)	935
MseI	TTAA	5 cut(s)	869, 893, 948, 1106, 1236
MslI	CAYNNNNRTG	1 cut(s)	233
MspI	CCGG	1 cut(s)	731
MspR9I	CCNGG	3 cut(s)	818, 1147, 1208
MunI	CAATTG	1 cut(s)	203
Mva1269I	GAATGC	1 cut(s)	484
MvaI	CCWGG	3 cut(s)	818, 1147, 1208
MwoI	GCNNNNNNNGC	3 cut(s)	68, 448, 467
NdeII	GATC	6 cut(s)	88, 217, 313, 397, 673, 1263
NheI	GCTAGC	1 cut(s)	71
NlaIII	CATG	3 cut(s)	227, 1075, 1283
NmuCI	GTSAC	1 cut(s)	597
PagI	TCATGA	1 cut(s)	1279
PceI	AGGCCT	1 cut(s)	854
PcsI	WCGNNNNNNNCGW	3 cut(s)	156, 159, 1301
PctI	GAATGC	1 cut(s)	484
PdmI	GAANNNNTTC	1 cut(s)	935
PfeI	GAWTC	5 cut(s)	211, 329, 1037, 1121, 1163
PflFI	GACNNNGTC	1 cut(s)	113
PfoI	TCCNGGA	1 cut(s)	816
PkrI	GCNGC	3 cut(s)	444, 829, 1249
PleI	GAGTC	1 cut(s)	380
PpsI	GAGTC	1 cut(s)	380
PsiI	TTATAA	1 cut(s)	404
Psp6I	CCWGG	3 cut(s)	816, 1145, 1206
PspEI	GGTNACC	1 cut(s)	907
PspGI	CCWGG	3 cut(s)	816, 1145, 1206
PstI	CTGCAG	1 cut(s)	891
PsuI	RGATCY	2 cut(s)	313, 397
PsyI	GACNNNGTC	1 cut(s)	113
RsaI	GTAC	3 cut(s)	17, 637, 771
RsaNI	GTAC	3 cut(s)	16, 636, 770
RseI	CAYNNNNRTG	1 cut(s)	233
SaqAI	TTAA	5 cut(s)	869, 893, 948, 1106, 1236
SatI	GCNGC	3 cut(s)	443, 828, 1248
Sau3AI	GATC	6 cut(s)	88, 217, 313, 397, 673, 1263
ScaI	AGTACT	1 cut(s)	771
SchI	GAGTC	1 cut(s)	380
ScrFI	CCNGG	3 cut(s)	818, 1147, 1208
SexAI	ACCWGGT	1 cut(s)	1206
SfaNI	GCATC	2 cut(s)	49, 1291
SfcI	CTRYAG	1 cut(s)	887
SmiMI	CAYNNNNRTG	1 cut(s)	233
SmlI	CTYRAG	3 cut(s)	53, 836, 989
SmoI	CTYRAG	3 cut(s)	53, 836, 989
SpeI	ACTAGT	1 cut(s)	766
Sse9I	AATT	9 cut(s)	135, 203, 300, 494, 717, 737, 864, 935, 1103
SseBI	AGGCCT	1 cut(s)	854
SsiI	CCGC	3 cut(s)	709, 1009, 1248
SspI	AATATT	1 cut(s)	573
SspMI	CTAG	5 cut(s)	72, 539, 767, 1052, 1244
StuI	AGGCCT	1 cut(s)	854
StyD4I	CCNGG	3 cut(s)	816, 1145, 1206
TaaI	ACNGT	6 cut(s)	688, 925, 1029, 1095, 1218, 1291
TaiI	ACGT	1 cut(s)	1135
TaqI	TCGA	3 cut(s)	150, 159, 389
TaqII	GACCGA	1 cut(s)	101
TasI	AATT	9 cut(s)	135, 203, 300, 494, 717, 737, 864, 935, 1103
TatI	WGTACW	2 cut(s)	635, 769
TauI	GCSGC	1 cut(s)	1250
TfiI	GAWTC	5 cut(s)	211, 329, 1037, 1121, 1163
Tru1I	TTAA	5 cut(s)	869, 893, 948, 1106, 1236
Tru9I	TTAA	5 cut(s)	869, 893, 948, 1106, 1236
TscAI	CASTG	2 cut(s)	458, 606
TseFI	GTSAC	1 cut(s)	597
TseI	GCWGC	2 cut(s)	442, 827
Tsp45I	GTSAC	1 cut(s)	597
TspDTI	ATGAA	7 cut(s)	260, 340, 516, 1116, 1268, 1272, 1296
TspRI	CASTG	2 cut(s)	458, 606
Tth111I	GACNNNGTC	1 cut(s)	113
XapI	RAATTY	4 cut(s)	135, 494, 864, 935
XmnI	GAANNNNTTC	1 cut(s)	935
XspI	CTAG	5 cut(s)	72, 539, 767, 1052, 1244
ZrmI	AGTACT	1 cut(s)	771

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.