MD15G1425300.v1.1

Kinetochore protein Nuf2

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Reverse (-)
52624254 .. 52629642
5389 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1425300.v1.1.491

Sequence Viewer

Length: 1326 bp
ATGTCGAAGTTTGAGTACCCGAAGCTTACTCGCTCCGACATCGTCACAATCCTCGCCGACTCTCACATCGTCGTTATTTCCGACCGCGATCTCGTCAACCCCAATCCTGATTTCGTCGCCGACCTCTACACCCGCATCCTCATCTCCCTCGACTTCTTCCACGAGGAAGATTATGGGCAGGTTGAGTTTTCGGCCTTGGAGCAGCTCGAGAACCCGGATTTTCACATGGACTCGGTCCGGACCATGAAGCTATACAACAGAATCAAGGAAGTGGTGGCTTTAGTGGATTGTCCTAAAAGATTTACTCTAAAAGATATGATAAAACCCGAGACGGATCGGACTGAATATTTTGTCAGTGCACTTCTCAATTTCTCTCTTCACAGAGAGACAAAAATGAATACCCTTACCCAAGTCGTGGATCAATTAACTGACATAGATGAGCAACGCAAAGGGTGGGAGGACAAAATTTCCCAGTTGAATGCAGAGATTGCGGACTACAATGAAGCAAGAGAAAAGGAGTTGCCTCTTGTTCAAGAGGTAGATGCAAAAGTTAAAGAATTGCACCAAACTGTTTCAGGCCTTAACAATCAGCAAAAGTCACTGAGAACTTCTCGTCAGAAGTTGAAGGAGAAGATTGGAGAAATAGAGGAAAAGGTTTCGAGTGCAGAGTTTTCTTTGGTACAAAGTGTTCAAGAAAATGCAAATTTGCGCTCAAAAATTGTTCAGTCACCAGATAAATTGCAGAGGGCTTTAGAAGAGAAGAAATCAGTTCGTGAGGAGGCGAAAAATGCTGAAAGGTCAGCGAAGCAATCCTTGGAGGAGAAGACCGCTGTTGATGAGGTTTATACAAAGGTGTCTAAGAAATTGTCAAAACACTTGGCCCAAATGCAAGCTATACAAGAACAGGTTAATTCTGCTAAATCAGTCGACAGAGACTTTAAGGCTGTAAAAGCTAAACTAAGTGATGATGGAGTTGTAAGCAAGTCTCTTCAGGCCAAACTGGTTGAACGGGAGGGAAAAGTGGAACAGTTGAATGAATTAAAAAAGAAGCTAGAAAGGGAAAGAGATTTGAAGTTTGAGGAGGCTTCTAAAGATTTGAATAATGTGGAGCTGGAGGTGGAATCTAGGAGGCGTGATCTAGAAGCAAGGCAAAAAGCTGTTGAAGCTGCGGTGGAAGAGGTGGATTCTATCACTTCAAAGACAGTATCAATAAAAGAATCTGGGGCAGCTGATCAGAAAGAATTAGCTCGTAAATGCGAGGAGATTATGAAAGAGTTCCACCAGTACCAGAACTCAATCAGGGTCCTGCTGATGGAGAGCCAATAG

Protein Analysis

442

Amino Acids

50.79

Weight (kDa)

5.48

Isoelectric Point (pI)

33.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nuf2 PF03800 4 - 141 2.3e-28 Nuf2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 169
AccB7I CCANNNNNTGG 1 cut(s) 415
AccI GTMKAC 1 cut(s) 927
AccII CGCG 1 cut(s) 87
AccIII TCCGGA 1 cut(s) 237
AciI CCGC 5 cut(s) 85, 133, 491, 828, 1169
AclWI GGATC 2 cut(s) 342, 426
AcsI RAATTY 2 cut(s) 465, 703
AcuI CTGAAG 1 cut(s) 974
AfaI GTAC 3 cut(s) 17, 681, 1286
AfiI CCNNNNNNNGG 2 cut(s) 415, 1312
AjuI GAANNNNNNNTTGG 4 cut(s) 95, 127, 797, 829
Alw21I GWGCWC 1 cut(s) 361
Alw26I GTCTC 4 cut(s) 323, 380, 927, 990
Alw44I GTGCAC 1 cut(s) 357
AlwI GGATC 2 cut(s) 342, 426
Ama87I CYCGRG 2 cut(s) 206, 326
Aor13HI TCCGGA 1 cut(s) 237
AoxI GGCC 4 cut(s) 192, 577, 879, 993
ApaLI GTGCAC 1 cut(s) 357
ApeKI GCWGC 3 cut(s) 202, 1166, 1226
ApoI RAATTY 2 cut(s) 465, 703
Asp700I GAANNNNTTC 1 cut(s) 1274
AspLEI GCGC 1 cut(s) 711
AspS9I GGNCC 4 cut(s) 235, 240, 880, 1303
AsuC2I CCSGG 1 cut(s) 215
AsuHPI GGTGA 1 cut(s) 720
AvaI CYCGRG 2 cut(s) 206, 326
AvaII GGWCC 3 cut(s) 235, 240, 1303
BaeGI GKGCMC 1 cut(s) 361
BarI GAAGNNNNNNTAC 1 cut(s) 31
BauI CACGAG 1 cut(s) 161
BbsI GAAGAC 1 cut(s) 830
Bbv12I GWGCWC 1 cut(s) 361
BbvI GCAGC 3 cut(s) 214, 1153, 1238
BccI CCATC 2 cut(s) 962, 1306
BclI TGATCA 1 cut(s) 1231
BcnI CCSGG 1 cut(s) 215
BcoDI GTCTC 4 cut(s) 323, 380, 927, 990
BfaI CTAG 3 cut(s) 1052, 1125, 1139
BfuAI ACCTGC 1 cut(s) 169
BisI GCNGC 3 cut(s) 203, 1167, 1227
BlsI GCNGC 3 cut(s) 204, 1168, 1228
Bme1390I CCNGG 1 cut(s) 215
Bme18I GGWCC 3 cut(s) 235, 240, 1303
BmeT110I CYCGRG 2 cut(s) 206, 326
BmgT120I GGNCC 4 cut(s) 235, 240, 880, 1303
BmiI GGNNCC 1 cut(s) 1304
BmrFI CCNGG 1 cut(s) 215
BmrI ACTGGG 1 cut(s) 466
BmsI GCATC 2 cut(s) 144, 532
BmuI ACTGGG 1 cut(s) 466
BpiI GAAGAC 1 cut(s) 830
BplI GAGNNNNNCTC 2 cut(s) 595, 627
BpmI CTGGAG 1 cut(s) 1133
BpuMI CCSGG 1 cut(s) 215
BsaJI CCNNGG 2 cut(s) 195, 813
BsaWI WCCGGW 1 cut(s) 237
Bsc4I CCNNNNNNNGG 2 cut(s) 415, 1312
Bse1I ACTGG 3 cut(s) 472, 1005, 1282
BseAI TCCGGA 1 cut(s) 237
BseDI CCNNGG 2 cut(s) 195, 813
BseGI GGATG 1 cut(s) 135
BseLI CCNNNNNNNGG 2 cut(s) 415, 1312
BseMII CTCAG 1 cut(s) 593
BseNI ACTGG 3 cut(s) 472, 1005, 1282
BseRI GAGGAG 4 cut(s) 791, 833, 1094, 1274
BseSI GKGCMC 1 cut(s) 361
BseXI GCAGC 3 cut(s) 214, 1153, 1238
BsgI GTGCAG 1 cut(s) 684
Bsh1236I CGCG 1 cut(s) 87
Bsh1285I CGRYCG 1 cut(s) 85
BshFI GGCC 4 cut(s) 194, 579, 881, 995
BsiEI CGRYCG 1 cut(s) 85
BsiHKAI GWGCWC 1 cut(s) 361
BsiHKCI CYCGRG 2 cut(s) 206, 326
BsiSI CCGG 2 cut(s) 215, 238
BslI CCNNNNNNNGG 2 cut(s) 415, 1312
BsmAI GTCTC 4 cut(s) 323, 380, 927, 990
BsmBI CGTCTC 1 cut(s) 323
BsmI GAATGC 1 cut(s) 484
BsnI GGCC 4 cut(s) 194, 579, 881, 995
BsoBI CYCGRG 2 cut(s) 206, 326
Bsp1286I GDGCHC 1 cut(s) 361
Bsp13I TCCGGA 1 cut(s) 237
Bsp143I GATC 5 cut(s) 88, 334, 418, 1135, 1231
BspACI CCGC 5 cut(s) 85, 133, 491, 828, 1169
BspANI GGCC 4 cut(s) 194, 579, 881, 995
BspCNI CTCAG 1 cut(s) 594
BspEI TCCGGA 1 cut(s) 237
BspFNI CGCG 1 cut(s) 87
BspLI GGNNCC 1 cut(s) 1304
BspMI ACCTGC 1 cut(s) 169
BspPI GGATC 2 cut(s) 342, 426
BsrI ACTGG 3 cut(s) 472, 1005, 1282
BssECI CCNNGG 2 cut(s) 195, 813
BssMI GATC 5 cut(s) 88, 334, 418, 1135, 1231
BssSI CACGAG 1 cut(s) 161
BssT1I CCWWGG 2 cut(s) 195, 813
Bst2BI CACGAG 1 cut(s) 161
Bst4CI ACNGT 3 cut(s) 571, 1029, 1204
Bst6I CTCTTC 4 cut(s) 381, 750, 993, 1170
BstAPI GCANNNNNTGC 1 cut(s) 488
BstC8I GCNNGC 1 cut(s) 891
BstDEI CTNAG 3 cut(s) 602, 858, 959
BstF5I GGATG 1 cut(s) 135
BstFNI CGCG 1 cut(s) 87
BstHHI GCGC 1 cut(s) 711
BstKTI GATC 5 cut(s) 91, 337, 421, 1138, 1234
BstMAI GTCTC 4 cut(s) 323, 380, 927, 990
BstMBI GATC 5 cut(s) 88, 334, 418, 1135, 1231
BstMCI CGRYCG 1 cut(s) 85
BstMWI GCNNNNNNNGC 4 cut(s) 488, 788, 950, 1163
BstSCI CCNGG 1 cut(s) 213
BstSLI GKGCMC 1 cut(s) 361
BstUI CGCG 1 cut(s) 87
BstV1I GCAGC 3 cut(s) 214, 1153, 1238
BstV2I GAAGAC 1 cut(s) 830
BsuRI GGCC 4 cut(s) 194, 579, 881, 995
BtsCI GGATG 1 cut(s) 135
BtsIMutI CAGTG 2 cut(s) 361, 599
BveI ACCTGC 1 cut(s) 169
Cac8I GCNNGC 1 cut(s) 891
CfoI GCGC 1 cut(s) 711
Cfr13I GGNCC 4 cut(s) 235, 240, 880, 1303
CpoI CGGWCCG 1 cut(s) 235
Csp6I GTAC 3 cut(s) 16, 680, 1285
CspI CGGWCCG 1 cut(s) 235
CviAII CATG 2 cut(s) 226, 244
CviQI GTAC 3 cut(s) 16, 680, 1285
DdeI CTNAG 3 cut(s) 602, 858, 959
DpnI GATC 5 cut(s) 90, 336, 420, 1137, 1233
DpnII GATC 5 cut(s) 88, 334, 418, 1135, 1231
Eam1104I CTCTTC 4 cut(s) 381, 750, 993, 1170
EarI CTCTTC 4 cut(s) 381, 750, 993, 1170
Eco130I CCWWGG 2 cut(s) 195, 813
Eco147I AGGCCT 1 cut(s) 579
Eco47I GGWCC 3 cut(s) 235, 240, 1303
Eco57I CTGAAG 1 cut(s) 974
Eco88I CYCGRG 2 cut(s) 206, 326
EcoO109I RGGNCCY 1 cut(s) 1303
EcoT14I CCWWGG 2 cut(s) 195, 813
ErhI CCWWGG 2 cut(s) 195, 813
Esp3I CGTCTC 1 cut(s) 323
FaeI CATG 2 cut(s) 229, 247
FaiI YATR 9 cut(s) 174, 227, 245, 253, 317, 434, 846, 896, 1268
FalI AAGNNNNNCTT 2 cut(s) 797, 829
FatI CATG 2 cut(s) 225, 243
FauI CCCGC 1 cut(s) 140
FbaI TGATCA 1 cut(s) 1231
FblI GTMKAC 1 cut(s) 927
Fnu4HI GCNGC 3 cut(s) 203, 1167, 1227
FokI GGATG 1 cut(s) 122
Fsp4HI GCNGC 3 cut(s) 203, 1167, 1227
FspBI CTAG 3 cut(s) 1052, 1125, 1139
GlaI GCGC 1 cut(s) 710
GluI GCNGC 3 cut(s) 203, 1167, 1227
GsuI CTGGAG 1 cut(s) 1133
HaeIII GGCC 4 cut(s) 194, 579, 881, 995
HapII CCGG 2 cut(s) 215, 238
HhaI GCGC 1 cut(s) 711
Hin1II CATG 2 cut(s) 229, 247
Hin6I GCGC 1 cut(s) 709
HinP1I GCGC 1 cut(s) 709
HincII GTYRAC 2 cut(s) 97, 928
HindII GTYRAC 2 cut(s) 97, 928
HindIII AAGCTT 1 cut(s) 23
HinfI GANTC 6 cut(s) 59, 230, 261, 1121, 1184, 1217
HpaII CCGG 2 cut(s) 215, 238
HphI GGTGA 1 cut(s) 720
Hpy166II GTNNAC 3 cut(s) 97, 359, 928
Hpy188I TCNGA 5 cut(s) 37, 82, 339, 618, 1236
Hpy188III TCNNGA 7 cut(s) 107, 208, 238, 533, 692, 773, 1139
Hpy8I GTNNAC 3 cut(s) 97, 359, 928
Hpy99I CGWCG 2 cut(s) 74, 119
HpyAV CCTTC 1 cut(s) 619
HpyCH4III ACNGT 3 cut(s) 571, 1029, 1204
HpyCH4V TGCA 8 cut(s) 359, 482, 545, 562, 665, 701, 742, 889
HpyF10VI GCNNNNNNNGC 4 cut(s) 488, 788, 950, 1163
HpyF3I CTNAG 3 cut(s) 602, 858, 959
Hsp92II CATG 2 cut(s) 229, 247
HspAI GCGC 1 cut(s) 709
Kpn2I TCCGGA 1 cut(s) 237
Ksp22I TGATCA 1 cut(s) 1231
Kzo9I GATC 5 cut(s) 88, 334, 418, 1135, 1231
LmnI GCTCC 3 cut(s) 38, 199, 1108
Lsp1109I GCAGC 3 cut(s) 214, 1153, 1238
LweI GCATC 2 cut(s) 144, 532
MaeI CTAG 3 cut(s) 1052, 1125, 1139
MaeIII GTNAC 3 cut(s) 43, 597, 726
MalI GATC 5 cut(s) 90, 336, 420, 1137, 1233
MboI GATC 5 cut(s) 88, 334, 418, 1135, 1231
MboII GAAGA 9 cut(s) 148, 179, 368, 643, 767, 772, 835, 980, 1187
MhlI GDGCHC 1 cut(s) 361
MlyI GAGTC 2 cut(s) 53, 224
MmeI TCCRAC 2 cut(s) 60, 105
MroI TCCGGA 1 cut(s) 237
MroXI GAANNNNTTC 1 cut(s) 1274
MseI TTAA 6 cut(s) 425, 552, 582, 909, 939, 1040
MspA1I CMGCKG 2 cut(s) 830, 1229
MspI CCGG 2 cut(s) 215, 238
MspR9I CCNGG 1 cut(s) 215
Mva1269I GAATGC 1 cut(s) 484
MvnI CGCG 1 cut(s) 87
MwoI GCNNNNNNNGC 4 cut(s) 488, 788, 950, 1163
NciI CCSGG 1 cut(s) 215
NdeII GATC 5 cut(s) 88, 334, 418, 1135, 1231
NlaIII CATG 2 cut(s) 229, 247
NlaIV GGNNCC 1 cut(s) 1304
NmuCI GTSAC 3 cut(s) 43, 597, 726
PaeR7I CTCGAG 1 cut(s) 206
PceI AGGCCT 1 cut(s) 579
PcsI WCGNNNNNNNCGW 1 cut(s) 78
PctI GAATGC 1 cut(s) 484
PdmI GAANNNNTTC 1 cut(s) 1274
PfeI GAWTC 4 cut(s) 261, 1121, 1184, 1217
PflFI GACNNNGTC 2 cut(s) 41, 233
PflMI CCANNNNNTGG 1 cut(s) 415
PkrI GCNGC 3 cut(s) 204, 1168, 1228
PleI GAGTC 2 cut(s) 53, 224
PpsI GAGTC 2 cut(s) 53, 224
PpuMI RGGWCCY 1 cut(s) 1303
Psp5II RGGWCCY 1 cut(s) 1303
PspN4I GGNNCC 1 cut(s) 1304
PspPI GGNCC 4 cut(s) 235, 240, 880, 1303
PspPPI RGGWCCY 1 cut(s) 1303
PsrI GAACNNNNNNTAC 2 cut(s) 672, 704
PsyI GACNNNGTC 2 cut(s) 41, 233
PvuII CAGCTG 1 cut(s) 1229
RsaI GTAC 3 cut(s) 17, 681, 1286
RsaNI GTAC 3 cut(s) 16, 680, 1285
Rsr2I CGGWCCG 1 cut(s) 235
RsrII CGGWCCG 1 cut(s) 235
SalI GTCGAC 1 cut(s) 926
SaqAI TTAA 6 cut(s) 425, 552, 582, 909, 939, 1040
SatI GCNGC 3 cut(s) 203, 1167, 1227
Sau3AI GATC 5 cut(s) 88, 334, 418, 1135, 1231
Sau96I GGNCC 4 cut(s) 235, 240, 880, 1303
SchI GAGTC 2 cut(s) 53, 224
ScrFI CCNGG 1 cut(s) 215
SduI GDGCHC 1 cut(s) 361
SfaNI GCATC 2 cut(s) 144, 532
Sfr274I CTCGAG 1 cut(s) 206
SinI GGWCC 3 cut(s) 235, 240, 1303
SlaI CTCGAG 1 cut(s) 206
SmlI CTYRAG 1 cut(s) 206
SmoI CTYRAG 1 cut(s) 206
SseBI AGGCCT 1 cut(s) 579
SsiI CCGC 5 cut(s) 85, 133, 491, 828, 1169
SspI AATATT 1 cut(s) 347
SspMI CTAG 3 cut(s) 1052, 1125, 1139
StuI AGGCCT 1 cut(s) 579
StyD4I CCNGG 1 cut(s) 213
StyI CCWWGG 2 cut(s) 195, 813
TaaI ACNGT 3 cut(s) 571, 1029, 1204
TaqI TCGA 5 cut(s) 5, 150, 207, 659, 927
TaqII GACCGA 1 cut(s) 223
TfiI GAWTC 4 cut(s) 261, 1121, 1184, 1217
Tru1I TTAA 6 cut(s) 425, 552, 582, 909, 939, 1040
Tru9I TTAA 6 cut(s) 425, 552, 582, 909, 939, 1040
TscAI CASTG 2 cut(s) 361, 606
TseFI GTSAC 3 cut(s) 43, 597, 726
TseI GCWGC 3 cut(s) 202, 1166, 1226
Tsp45I GTSAC 3 cut(s) 43, 597, 726
TspDTI ATGAA 5 cut(s) 260, 410, 516, 1050, 1283
TspGWI ACGGA 1 cut(s) 347
TspRI CASTG 2 cut(s) 361, 606
Tth111I GACNNNGTC 2 cut(s) 41, 233
Van91I CCANNNNNTGG 1 cut(s) 415
VneI GTGCAC 1 cut(s) 357
VpaK11BI GGWCC 3 cut(s) 235, 240, 1303
XapI RAATTY 2 cut(s) 465, 703
XbaI TCTAGA 1 cut(s) 1138
XhoI CTCGAG 1 cut(s) 206
XmiI GTMKAC 1 cut(s) 927
XmnI GAANNNNTTC 1 cut(s) 1274
XspI CTAG 3 cut(s) 1052, 1125, 1139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.