Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0002625

Physical Location & Seq

Genomic Coordinates Forward (+)

25490413 .. 25496323

Gene Structure 5911 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002102

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGTCAAAGTTCGTATACCCTCGGCTGTCCCGGAGCGACATAGTGTCAATCGTGATGGACGCTCAGATCATGGATATTTCGGAGCAGCATCTTCTCAACCCCAACCCTGATTTCGTCGCCGACCTCTACACCCGCATCCTCATCGCTCTCGACTTCTTCAATCAGGATTTTGGGCAAGTTGATTTCGATGCCTTGCAGCAGTTTGAGAATCCCGATTTTCATGAGACCTCCCTCCACAGCATCAACCTCTGCAACAGAATCAAGCAAGTCCTCGCCTTATTGAATGCTGAGATTGCGGGTTTCAATGAAGCAAGAGAAAAGGAGTTGCCTCTTCTGCGGGAGGTAGATGCCAGAGTTAAAGAATTGCGCCAAACCATTGAAGGCCTCAACAACGACCAAGTTAAAGTCAGAACTTCTCTTAAGAAGTTGAAGGAGAAGAGTGGAGAAATGGACAAACAGATTTCTGATGCTGATTTTGATCTGCTAAAATGTGATTCCGAGAGACAAGAATTACGTTCAAGAATTGTACAGTCACCAGATAAACTGCAGAGGGCTGTAGAAGAGAAGAAATCAATTCGGGAGAACGCAAAGAATGATGAAATGTCAGCCATGCAATCTTTTAAGGAGAAGACTGCTGTTGAGGAGGTTTATACGAAGGTTCTAAAGAAATTATCAAAGCACTTGGTCCAGATGCAGGCTATACAAGAACAGGTCAATTCTGCTAAATTTGCGGGCAAAGACTATAAAGCATTAAAAGATAAAATAAGTGATGATGAAATCCTGATCAAGTCTCTTCAGAACGAAGTTGTGAAACGACAGGCAAAAGTGAAAGATTTGAATGACTTGAAAAGGAAGCTAGAAAAGGAAAGAGATCTAAAGTTTGAGGAGGCTACTAAAGAATTTAGTAATGTCAAGCTGGAGGTGGAATCAAGGAGGGGTGTTCTTGAAGCAAGGCAAAAGGATGTTGAAGCTGCAGTAGCAGAGGTGGATTCTATAACTGCAAAGGTTGCCTCAGTAAGAAAATCTGCAGCAGCTGATCAGCAAGCATTAGCTCATAAATGTGAGGAGATCATTAAAGAGTTCCACCAATATGCAAGTTCAATTGGGGTCTTGCTGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000070 GO:0000228 GO:0000278 GO:0000280 GO:0000775 GO:0000776 GO:0000777 GO:0000778 GO:0000779 GO:0000780 GO:0000793 GO:0000794 GO:0000819 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005773 GO:0005774 GO:0005815 GO:0005816 GO:0005856 GO:0005886 GO:0006996 GO:0007049 GO:0007059 GO:0007080 GO:0007127 GO:0008150 GO:0008608 GO:0009987 GO:0015630 GO:0016020 GO:0016043 GO:0022402 GO:0022414 GO:0031090 GO:0031262 GO:0031617 GO:0031974 GO:0031981 GO:0032991 GO:0035974 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044437 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0048285 GO:0050000 GO:0051179 GO:0051234 GO:0051276 GO:0051303 GO:0051310 GO:0051315 GO:0051316 GO:0051321 GO:0051455 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0061982 GO:0070013 GO:0071840 GO:0071944 GO:0098588 GO:0098687 GO:0098805 GO:0098813 GO:0140013 GO:0140014 GO:1903046 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nuf2

Protein Analysis

374

Amino Acids

42.74

Weight (kDa)

6.03

Isoelectric Point (pI)

34.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nuf2	PF03800	4 - 94	1.6e-11	Nuf2 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61000
fragaria_vesca	FvH4_6g25020 FvH4_6g25020 FvH4_6g25020 FvH4_6g25020 FvH4_6g25020 FvH4_6g25020 FvH4_7g06682 FvH4_7g06682 FvH4_7g06682 FvH4_7g06682 FvH4_7g06682
malus_domestica	MD08G1232500.v1.1 MD08G1233000.v1.1 MD15G1425300.v1.1
prunus_persica	Prupe.1G570900_v2.0.a1 Prupe.1G570900_v2.0.a1
pyrus_communis	pycom08g20190 pycom15g37700
rosa_chinensis	RchiOBHm_Chr1g0336301 RchiOBHm_Chr7g0222021
rosa_laevigata	RLG00000002102 RLG00000029374
rosa_multiflora	Rmu_co8043290.1_g000001 Rmu_sc0001453.1_g000009 Rmu_sc0004325.1_g000003
rosa_roxburghii	Rroxscaffold_3G00237490 Rroxscaffold_4G00315800
rosa_rugosa	Rorug01G0123600 Rorug07G0205100
rosa_samantha	Rh1AG144300 Rh1BG113700 Rh1CG135800 Rh1DG150800 Rh7AG345600 Rh7BG336200 Rh7CG363300 Rh7DG343900
rosa_wichuraiana	Rw0G015220 Rw7G029310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	15
AciI	CCGC	4 cut(s)	133, 296, 337, 731
AcsI	RAATTY	2 cut(s)	725, 899
AcuI	CTGAAG	1 cut(s)	779
AfaI	GTAC	1 cut(s)	528
AfiI	CCNNNNNNNGG	1 cut(s)	694
AflII	CTTAAG	1 cut(s)	419
AhdI	GACNNNNNGTC	1 cut(s)	43
AjuI	GAANNNNNNNTTGG	2 cut(s)	95, 127
AluBI	AGCT	5 cut(s)	856, 916, 971, 1034, 1052
AluI	AGCT	5 cut(s)	856, 916, 971, 1034, 1052
Alw26I	GTCTC	3 cut(s)	218, 496, 795
AlwNI	CAGNNNCTG	1 cut(s)	1034
AoxI	GGCC	1 cut(s)	382
ApeKI	GCWGC	6 cut(s)	85, 196, 971, 1028, 1031, 1114
ApoI	RAATTY	2 cut(s)	725, 899
AspLEI	GCGC	1 cut(s)	369
AspS9I	GGNCC	1 cut(s)	685
AsuC2I	CCSGG	1 cut(s)	31
AsuHPI	GGTGA	1 cut(s)	525
AvaII	GGWCC	1 cut(s)	685
BbsI	GAAGAC	1 cut(s)	635
BbvI	GCAGC	6 cut(s)	97, 208, 958, 1040, 1043, 1101
BccI	CCATC	1 cut(s)	49
BcgI	CGANNNNNNTGC	2 cut(s)	124, 158
BclI	TGATCA	2 cut(s)	783, 1036
BcnI	CCSGG	1 cut(s)	31
BcoDI	GTCTC	3 cut(s)	218, 496, 795
BfaI	CTAG	1 cut(s)	857
BfmI	CTRYAG	4 cut(s)	545, 555, 972, 1026
BfrI	CTTAAG	1 cut(s)	419
BglII	AGATCT	1 cut(s)	871
BisI	GCNGC	6 cut(s)	86, 197, 972, 1029, 1032, 1115
BlsI	GCNGC	6 cut(s)	87, 198, 973, 1030, 1033, 1116
Bme1390I	CCNGG	1 cut(s)	31
Bme18I	GGWCC	1 cut(s)	685
BmeRI	GACNNNNNGTC	1 cut(s)	43
BmgT120I	GGNCC	1 cut(s)	685
BmrFI	CCNGG	1 cut(s)	31
BmsI	GCATC	7 cut(s)	97, 144, 178, 249, 337, 457, 681
BpiI	GAAGAC	1 cut(s)	635
BpmI	CTGGAG	1 cut(s)	938
BpuMI	CCSGG	1 cut(s)	31
BsaBI	GATNNNNATC	1 cut(s)	477
BsaI	GGTCTC	1 cut(s)	218
BsaJI	CCNNGG	1 cut(s)	20
Bsc4I	CCNNNNNNNGG	1 cut(s)	694
Bse8I	GATNNNNATC	1 cut(s)	477
BseDI	CCNNGG	1 cut(s)	20
BseGI	GGATG	2 cut(s)	135, 967
BseJI	GATNNNNATC	1 cut(s)	477
BseLI	CCNNNNNNNGG	1 cut(s)	694
BseMII	CTCAG	3 cut(s)	77, 279, 1026
BseRI	GAGGAG	3 cut(s)	656, 899, 1079
BseXI	GCAGC	6 cut(s)	97, 208, 958, 1040, 1043, 1101
BshFI	GGCC	1 cut(s)	384
BsiSI	CCGG	1 cut(s)	31
BslFI	GGGAC	1 cut(s)	13
BslI	CCNNNNNNNGG	1 cut(s)	694
BsmAI	GTCTC	3 cut(s)	218, 496, 795
BsmFI	GGGAC	1 cut(s)	13
BsmI	GAATGC	1 cut(s)	289
BsnI	GGCC	1 cut(s)	384
Bso31I	GGTCTC	1 cut(s)	218
Bsp1407I	TGTACA	1 cut(s)	526
Bsp143I	GATC	6 cut(s)	66, 478, 783, 871, 1036, 1068
BspACI	CCGC	4 cut(s)	133, 296, 337, 731
BspANI	GGCC	1 cut(s)	384
BspCNI	CTCAG	3 cut(s)	76, 280, 1025
BspHI	TCATGA	1 cut(s)	220
BspMAI	CTGCAG	3 cut(s)	549, 976, 1030
BspTI	CTTAAG	1 cut(s)	419
BspTNI	GGTCTC	1 cut(s)	218
BsrGI	TGTACA	1 cut(s)	526
BssECI	CCNNGG	1 cut(s)	20
BssMI	GATC	6 cut(s)	66, 478, 783, 871, 1036, 1068
BssNAI	GTATAC	1 cut(s)	16
Bst1107I	GTATAC	1 cut(s)	16
Bst4CI	ACNGT	1 cut(s)	531
Bst6I	CTCTTC	4 cut(s)	336, 431, 555, 798
BstAFI	CTTAAG	1 cut(s)	419
BstAPI	GCANNNNNTGC	1 cut(s)	1007
BstAUI	TGTACA	1 cut(s)	526
BstC8I	GCNNGC	3 cut(s)	696, 733, 1044
BstDEI	CTNAG	3 cut(s)	63, 288, 1012
BstF5I	GGATG	2 cut(s)	135, 967
BstHHI	GCGC	1 cut(s)	369
BstKTI	GATC	6 cut(s)	69, 481, 786, 874, 1039, 1071
BstMAI	GTCTC	3 cut(s)	218, 496, 795
BstMBI	GATC	6 cut(s)	66, 478, 783, 871, 1036, 1068
BstMWI	GCNNNNNNNGC	5 cut(s)	293, 334, 728, 977, 1007
BstSCI	CCNGG	1 cut(s)	29
BstSFI	CTRYAG	4 cut(s)	545, 555, 972, 1026
BstV1I	GCAGC	6 cut(s)	97, 208, 958, 1040, 1043, 1101
BstV2I	GAAGAC	1 cut(s)	635
BstX2I	RGATCY	1 cut(s)	871
BstYI	RGATCY	1 cut(s)	871
BstZ17I	GTATAC	1 cut(s)	16
BsuRI	GGCC	1 cut(s)	384
BtgZI	GCGATG	1 cut(s)	127
BtsCI	GGATG	2 cut(s)	135, 967
Cac8I	GCNNGC	3 cut(s)	696, 733, 1044
CaiI	CAGNNNCTG	1 cut(s)	1034
CciI	TCATGA	1 cut(s)	220
CfoI	GCGC	1 cut(s)	369
Cfr13I	GGNCC	1 cut(s)	685
CseI	GACGC	1 cut(s)	68
Csp6I	GTAC	1 cut(s)	527
CviAII	CATG	3 cut(s)	70, 221, 610
CviQI	GTAC	1 cut(s)	527
DdeI	CTNAG	3 cut(s)	63, 288, 1012
DpnI	GATC	6 cut(s)	68, 480, 785, 873, 1038, 1070
DpnII	GATC	6 cut(s)	66, 478, 783, 871, 1036, 1068
DriI	GACNNNNNGTC	1 cut(s)	43
Eam1104I	CTCTTC	4 cut(s)	336, 431, 555, 798
Eam1105I	GACNNNNNGTC	1 cut(s)	43
EarI	CTCTTC	4 cut(s)	336, 431, 555, 798
Eco147I	AGGCCT	1 cut(s)	384
Eco31I	GGTCTC	1 cut(s)	218
Eco47I	GGWCC	1 cut(s)	685
Eco57I	CTGAAG	1 cut(s)	779
FaeI	CATG	3 cut(s)	73, 224, 613
FaqI	GGGAC	1 cut(s)	13
FatI	CATG	3 cut(s)	69, 220, 609
FauI	CCCGC	4 cut(s)	140, 289, 330, 724
FbaI	TGATCA	2 cut(s)	783, 1036
FblI	GTMKAC	1 cut(s)	15
Fnu4HI	GCNGC	6 cut(s)	86, 197, 972, 1029, 1032, 1115
FokI	GGATG	2 cut(s)	122, 974
Fsp4HI	GCNGC	6 cut(s)	86, 197, 972, 1029, 1032, 1115
FspBI	CTAG	1 cut(s)	857
GlaI	GCGC	1 cut(s)	368
GluI	GCNGC	6 cut(s)	86, 197, 972, 1029, 1032, 1115
GsuI	CTGGAG	1 cut(s)	938
HaeIII	GGCC	1 cut(s)	384
HapII	CCGG	1 cut(s)	31
HgaI	GACGC	1 cut(s)	68
HhaI	GCGC	1 cut(s)	369
Hin1II	CATG	3 cut(s)	73, 224, 613
Hin6I	GCGC	1 cut(s)	367
HinP1I	GCGC	1 cut(s)	367
HinfI	GANTC	5 cut(s)	208, 258, 494, 926, 989
HpaII	CCGG	1 cut(s)	31
HphI	GGTGA	1 cut(s)	525
Hpy166II	GTNNAC	1 cut(s)	16
Hpy188I	TCNGA	6 cut(s)	66, 82, 410, 466, 499, 798
Hpy8I	GTNNAC	1 cut(s)	16
Hpy99I	CGWCG	1 cut(s)	119
HpyAV	CCTTC	3 cut(s)	374, 424, 649
HpyCH4III	ACNGT	1 cut(s)	531
HpyCH4IV	ACGT	1 cut(s)	514
HpyF10VI	GCNNNNNNNGC	5 cut(s)	293, 334, 728, 977, 1007
HpyF3I	CTNAG	3 cut(s)	63, 288, 1012
HpySE526I	ACGT	1 cut(s)	514
Hsp92II	CATG	3 cut(s)	73, 224, 613
HspAI	GCGC	1 cut(s)	367
Ksp22I	TGATCA	2 cut(s)	783, 1036
Kzo9I	GATC	6 cut(s)	66, 478, 783, 871, 1036, 1068
LmnI	GCTCC	2 cut(s)	33, 82
Lsp1109I	GCAGC	6 cut(s)	97, 208, 958, 1040, 1043, 1101
LweI	GCATC	7 cut(s)	97, 144, 178, 249, 337, 457, 681
MaeI	CTAG	1 cut(s)	857
MaeII	ACGT	1 cut(s)	514
MaeIII	GTNAC	1 cut(s)	531
MalI	GATC	6 cut(s)	68, 480, 785, 873, 1038, 1070
MboI	GATC	6 cut(s)	66, 478, 783, 871, 1036, 1068
MboII	GAAGA	8 cut(s)	83, 148, 323, 448, 572, 577, 640, 785
MfeI	CAATTG	1 cut(s)	1101
MflI	RGATCY	1 cut(s)	871
MluCI	AATT	9 cut(s)	362, 509, 522, 573, 668, 715, 725, 899, 1101
MseI	TTAA	6 cut(s)	357, 402, 420, 621, 752, 1074
MslI	CAYNNNNRTG	2 cut(s)	1059, 1089
MspA1I	CMGCKG	1 cut(s)	1034
MspCI	CTTAAG	1 cut(s)	419
MspI	CCGG	1 cut(s)	31
MspR9I	CCNGG	1 cut(s)	31
MunI	CAATTG	1 cut(s)	1101
Mva1269I	GAATGC	1 cut(s)	289
MwoI	GCNNNNNNNGC	5 cut(s)	293, 334, 728, 977, 1007
NciI	CCSGG	1 cut(s)	31
NdeII	GATC	6 cut(s)	66, 478, 783, 871, 1036, 1068
NlaIII	CATG	3 cut(s)	73, 224, 613
NmuCI	GTSAC	1 cut(s)	531
PagI	TCATGA	1 cut(s)	220
PceI	AGGCCT	1 cut(s)	384
PctI	GAATGC	1 cut(s)	289
PfeI	GAWTC	5 cut(s)	208, 258, 494, 926, 989
PfoI	TCCNGGA	1 cut(s)	29
PkrI	GCNGC	6 cut(s)	87, 198, 973, 1030, 1033, 1116
PspPI	GGNCC	1 cut(s)	685
PstI	CTGCAG	3 cut(s)	549, 976, 1030
PstNI	CAGNNNCTG	1 cut(s)	1034
PsuI	RGATCY	1 cut(s)	871
PvuII	CAGCTG	1 cut(s)	1034
RsaI	GTAC	1 cut(s)	528
RsaNI	GTAC	1 cut(s)	527
RseI	CAYNNNNRTG	2 cut(s)	1059, 1089
SaqAI	TTAA	6 cut(s)	357, 402, 420, 621, 752, 1074
SatI	GCNGC	6 cut(s)	86, 197, 972, 1029, 1032, 1115
Sau3AI	GATC	6 cut(s)	66, 478, 783, 871, 1036, 1068
Sau96I	GGNCC	1 cut(s)	685
ScrFI	CCNGG	1 cut(s)	31
SfaNI	GCATC	7 cut(s)	97, 144, 178, 249, 337, 457, 681
SfcI	CTRYAG	4 cut(s)	545, 555, 972, 1026
SinI	GGWCC	1 cut(s)	685
SmiMI	CAYNNNNRTG	2 cut(s)	1059, 1089
SmlI	CTYRAG	1 cut(s)	419
SmoI	CTYRAG	1 cut(s)	419
Sse9I	AATT	9 cut(s)	362, 509, 522, 573, 668, 715, 725, 899, 1101
SseBI	AGGCCT	1 cut(s)	384
SsiI	CCGC	4 cut(s)	133, 296, 337, 731
SspMI	CTAG	1 cut(s)	857
StuI	AGGCCT	1 cut(s)	384
StyD4I	CCNGG	1 cut(s)	29
TaaI	ACNGT	1 cut(s)	531
TaiI	ACGT	1 cut(s)	517
TaqI	TCGA	2 cut(s)	150, 186
TasI	AATT	9 cut(s)	362, 509, 522, 573, 668, 715, 725, 899, 1101
TatI	WGTACW	1 cut(s)	526
TfiI	GAWTC	5 cut(s)	208, 258, 494, 926, 989
Tru1I	TTAA	6 cut(s)	357, 402, 420, 621, 752, 1074
Tru9I	TTAA	6 cut(s)	357, 402, 420, 621, 752, 1074
TseFI	GTSAC	1 cut(s)	531
TseI	GCWGC	6 cut(s)	85, 196, 971, 1028, 1031, 1114
Tsp45I	GTSAC	1 cut(s)	531
TspDTI	ATGAA	4 cut(s)	209, 321, 612, 789
Vha464I	CTTAAG	1 cut(s)	419
VpaK11BI	GGWCC	1 cut(s)	685
XapI	RAATTY	2 cut(s)	725, 899
XmiI	GTMKAC	1 cut(s)	15
XspI	CTAG	1 cut(s)	857

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.