Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002625

Physical Location & Seq

Genomic Coordinates Forward (+)

18949225 .. 18957111

Gene Structure 7887 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g25020.t6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

ATGTCAAAGTTCATATACCCACGGCTGTCTCGCGTCGACATAGTCTCGATCATCATCGACGCTCAGATCATGGACATCTCGGAGCGCCATCTTCTCAACCCTAACCCTGACTTCGTCACCAACCTCTTCACCCGCGTCCTCATCGCTCTCGACTTCTTCAACGAGGATATTGGGCAAGTTGATTTCGACGCCTTGGAGCAGTTTGAGAATCCCGAATCTCATGACAGCTCCCTCCATATCATCAACCTCTGCAACAGAATCAGGCAGGTCCTGGACTTGGTGGATTGTCCTCACAGATTTACCCTCAAAGATCTCATAAGACCGGACCCCAATCGCACCGAGTTTTTTCTCAGTGCTATTATGAATTACCATCTTTATAGAGAGACAAAAGTGAAACAACTCACCGAACTTATGAATCCATTAACGGATATCGAGGAGCAGCACCAGTTGTTGCAGGGCCGGGTTTCCCAGTTGAATGTTGAGATTGCGGACTTCGATGACGCAAGAGAAAAGGAATCGCCTCTTCTTCAAGAGGCAGAGGCTAAAGTTAAAGAATTGCGCCAAACCATTGAAGGCCTTAACAACGAACAAGTTAAAGTCAGAACTTCTCTTAAGAAGTTGAAGGAGAAGAGTGGAGAAATGGACAAAGAGATTTCTGATGCTGATTTTGATCTGCTAAAATGTGATTCTGAGAGACAAGAATTACGCTCAAGAATTGTTCAGTCACCGGATAAACTGCAGAGGGCTGTAGAAGAGAAGAAATCAGTTCGAGAGAAGGCAAAAAATGATGAAATGTCAGCCATGCAATCTTTTAACGAGAAGACTGCTGTTGAGGAGGTTTATACAAAGGTTTTAAAGAAACTATCAAAGCACTTGGCCCAGATGCAGGTTATACAAGAACAGGTGAATTCGGCTAAATTTGCTGGCAAAGACTGTAAAGCATTAAAACAGAAAAAAAGTGATGATGAAATTCTGATTAAGTCTCTTCAGAACGAAGTTGTGAAACGACAGGCAAAAGTGAAAGATTTTAATGACTTGAAAAAGAAGCTAGAAAAGGAAAGATATCTAAAGTTTGAGGAGGCTACTAAGGAAGTTAATACAGTCAAGCTGGAGGTGGAATCAAGGAGAGGTCTTCTCGAAGCAAGGCAAAAGGATGTTGAAGCTGCGGTAGCAGAGGTGGATTCTATTACTGCAAGTATTGCCTCATTAAAGAAATCAGCAGCAGCTGATCAGCAAGCATTAGCTCTTAAATGTGAGGAGATCATTAAAGAGTTCCACCAATATGCAAGTTCGATTGGGAACTTGCTGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000070 GO:0000228 GO:0000278 GO:0000280 GO:0000775 GO:0000776 GO:0000777 GO:0000778 GO:0000779 GO:0000780 GO:0000793 GO:0000794 GO:0000819 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005773 GO:0005774 GO:0005815 GO:0005816 GO:0005856 GO:0005886 GO:0006996 GO:0007049 GO:0007059 GO:0007080 GO:0007127 GO:0008150 GO:0008608 GO:0009987 GO:0015630 GO:0016020 GO:0016043 GO:0022402 GO:0022414 GO:0031090 GO:0031262 GO:0031617 GO:0031974 GO:0031981 GO:0032991 GO:0035974 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044437 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0048285 GO:0050000 GO:0051179 GO:0051234 GO:0051276 GO:0051303 GO:0051310 GO:0051315 GO:0051316 GO:0051321 GO:0051455 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0061982 GO:0070013 GO:0071840 GO:0071944 GO:0098588 GO:0098687 GO:0098805 GO:0098813 GO:0140013 GO:0140014 GO:1903046 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nuf2

Protein Analysis

438

Amino Acids

50.36

Weight (kDa)

5.73

Isoelectric Point (pI)

37.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61000
fragaria_vesca	FvH4_6g25020 FvH4_6g25020 FvH4_6g25020 FvH4_6g25020 FvH4_6g25020 FvH4_6g25020 FvH4_7g06682 FvH4_7g06682 FvH4_7g06682 FvH4_7g06682 FvH4_7g06682
malus_domestica	MD08G1232500.v1.1 MD08G1233000.v1.1 MD15G1425300.v1.1
prunus_persica	Prupe.1G570900_v2.0.a1 Prupe.1G570900_v2.0.a1
pyrus_communis	pycom08g20190 pycom15g37700
rosa_chinensis	RchiOBHm_Chr1g0336301 RchiOBHm_Chr7g0222021
rosa_laevigata	RLG00000002102 RLG00000029374
rosa_multiflora	Rmu_co8043290.1_g000001 Rmu_sc0001453.1_g000009 Rmu_sc0004325.1_g000003
rosa_roxburghii	Rroxscaffold_3G00237490 Rroxscaffold_4G00315800
rosa_rugosa	Rorug01G0123600 Rorug07G0205100
rosa_samantha	Rh1AG144300 Rh1BG113700 Rh1CG135800 Rh1DG150800 Rh7AG345600 Rh7BG336200 Rh7CG363300 Rh7DG343900
rosa_wichuraiana	Rw0G015220 Rw7G029310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	256, 877
AccI	GTMKAC	1 cut(s)	36
AccII	CGCG	2 cut(s)	33, 135
AciI	CCGC	3 cut(s)	133, 488, 1166
AcsI	RAATTY	3 cut(s)	907, 917, 969
AcuI	CTGAAG	1 cut(s)	971
AcyI	GRCGYC	1 cut(s)	189
AfiI	CCNNNNNNNGG	2 cut(s)	277, 886
AflII	CTTAAG	1 cut(s)	611
AgsI	TTSAA	7 cut(s)	160, 475, 530, 572, 622, 1039, 1160
AjnI	CCWGG	1 cut(s)	270
AluBI	AGCT	6 cut(s)	228, 1048, 1108, 1163, 1226, 1244
AluI	AGCT	6 cut(s)	228, 1048, 1108, 1163, 1226, 1244
Alw26I	GTCTC	5 cut(s)	33, 49, 377, 688, 987
AlwNI	CAGNNNCTG	2 cut(s)	271, 1226
AoxI	GGCC	3 cut(s)	457, 574, 876
ApeKI	GCWGC	5 cut(s)	439, 1163, 1220, 1223, 1306
ApoI	RAATTY	3 cut(s)	907, 917, 969
AspLEI	GCGC	2 cut(s)	87, 561
AspS9I	GGNCC	4 cut(s)	268, 325, 457, 877
AsuC2I	CCSGG	1 cut(s)	461
AsuHPI	GGTGA	5 cut(s)	109, 121, 394, 717, 916
AvaII	GGWCC	2 cut(s)	268, 325
BbsI	GAAGAC	2 cut(s)	827, 1124
BbvI	GCAGC	5 cut(s)	451, 1150, 1232, 1235, 1293
BccI	CCATC	2 cut(s)	96, 378
BceAI	ACGGC	1 cut(s)	38
BcgI	CGANNNNNNTGC	2 cut(s)	806, 840
BciT130I	CCWGG	1 cut(s)	272
BclI	TGATCA	1 cut(s)	1228
BcnI	CCSGG	1 cut(s)	461
BcoDI	GTCTC	5 cut(s)	33, 49, 377, 688, 987
BfaI	CTAG	1 cut(s)	1049
BfmI	CTRYAG	2 cut(s)	737, 747
BfoI	RGCGCY	1 cut(s)	88
BfrI	CTTAAG	1 cut(s)	611
BfuAI	ACCTGC	2 cut(s)	256, 877
BglII	AGATCT	1 cut(s)	310
BisI	GCNGC	5 cut(s)	440, 1164, 1221, 1224, 1307
BlsI	GCNGC	5 cut(s)	441, 1165, 1222, 1225, 1308
Bme1390I	CCNGG	2 cut(s)	272, 461
Bme18I	GGWCC	2 cut(s)	268, 325
BmgT120I	GGNCC	4 cut(s)	268, 325, 457, 877
BmiI	GGNNCC	1 cut(s)	327
BmrFI	CCNGG	2 cut(s)	272, 461
BmrI	ACTGGG	1 cut(s)	463
BmsI	GCATC	2 cut(s)	649, 873
BmuI	ACTGGG	1 cut(s)	463
BpiI	GAAGAC	2 cut(s)	827, 1124
BplI	GAGNNNNNCTC	2 cut(s)	1119, 1151
BpmI	CTGGAG	1 cut(s)	1130
BpuEI	CTTGAG	1 cut(s)	694
BpuMI	CCSGG	1 cut(s)	461
BsaBI	GATNNNNATC	2 cut(s)	53, 669
BsaHI	GRCGYC	1 cut(s)	189
BsaJI	CCNNGG	2 cut(s)	20, 192
BsaWI	WCCGGW	2 cut(s)	322, 727
Bsc4I	CCNNNNNNNGG	2 cut(s)	277, 886
Bse1I	ACTGG	2 cut(s)	445, 469
Bse8I	GATNNNNATC	2 cut(s)	53, 669
BseBI	CCWGG	1 cut(s)	272
BseDI	CCNNGG	2 cut(s)	20, 192
BseGI	GGATG	1 cut(s)	1159
BseJI	GATNNNNATC	2 cut(s)	53, 669
BseLI	CCNNNNNNNGG	2 cut(s)	277, 886
BseMII	CTCAG	3 cut(s)	77, 364, 681
BseNI	ACTGG	2 cut(s)	445, 469
BseRI	GAGGAG	4 cut(s)	449, 848, 1091, 1271
BseXI	GCAGC	5 cut(s)	451, 1150, 1232, 1235, 1293
Bsh1236I	CGCG	2 cut(s)	33, 135
BshFI	GGCC	3 cut(s)	459, 576, 878
BsiSI	CCGG	3 cut(s)	323, 460, 728
BslI	CCNNNNNNNGG	2 cut(s)	277, 886
BsmAI	GTCTC	5 cut(s)	33, 49, 377, 688, 987
BsnI	GGCC	3 cut(s)	459, 576, 878
Bsp143I	GATC	6 cut(s)	48, 66, 310, 670, 1228, 1260
BspACI	CCGC	3 cut(s)	133, 488, 1166
BspANI	GGCC	3 cut(s)	459, 576, 878
BspCNI	CTCAG	3 cut(s)	76, 363, 682
BspFNI	CGCG	2 cut(s)	33, 135
BspHI	TCATGA	1 cut(s)	220
BspLI	GGNNCC	1 cut(s)	327
BspMAI	CTGCAG	1 cut(s)	741
BspMI	ACCTGC	2 cut(s)	256, 877
BspTI	CTTAAG	1 cut(s)	611
BsrI	ACTGG	2 cut(s)	445, 469
BssECI	CCNNGG	2 cut(s)	20, 192
BssMI	GATC	6 cut(s)	48, 66, 310, 670, 1228, 1260
BssNI	GRCGYC	1 cut(s)	189
BssT1I	CCWWGG	1 cut(s)	192
Bst2UI	CCWGG	1 cut(s)	272
Bst4CI	ACNGT	2 cut(s)	935, 1102
Bst6I	CTCTTC	5 cut(s)	131, 528, 623, 747, 990
BstACI	GRCGYC	1 cut(s)	189
BstAFI	CTTAAG	1 cut(s)	611
BstAPI	GCANNNNNTGC	1 cut(s)	1199
BstC8I	GCNNGC	2 cut(s)	925, 1236
BstDEI	CTNAG	4 cut(s)	63, 350, 690, 1086
BstDSI	CCRYGG	1 cut(s)	20
BstF5I	GGATG	1 cut(s)	1159
BstFNI	CGCG	2 cut(s)	33, 135
BstH2I	RGCGCY	1 cut(s)	88
BstHHI	GCGC	2 cut(s)	87, 561
BstKTI	GATC	6 cut(s)	51, 69, 313, 673, 1231, 1263
BstMAI	GTCTC	5 cut(s)	33, 49, 377, 688, 987
BstMBI	GATC	6 cut(s)	48, 66, 310, 670, 1228, 1260
BstMWI	GCNNNNNNNGC	3 cut(s)	920, 1169, 1199
BstNI	CCWGG	1 cut(s)	272
BstSCI	CCNGG	2 cut(s)	270, 459
BstSFI	CTRYAG	2 cut(s)	737, 747
BstUI	CGCG	2 cut(s)	33, 135
BstV1I	GCAGC	5 cut(s)	451, 1150, 1232, 1235, 1293
BstV2I	GAAGAC	2 cut(s)	827, 1124
BstX2I	RGATCY	1 cut(s)	310
BstYI	RGATCY	1 cut(s)	310
BsuRI	GGCC	3 cut(s)	459, 576, 878
BtgI	CCRYGG	1 cut(s)	20
BtgZI	GCGATG	1 cut(s)	127
BtsCI	GGATG	1 cut(s)	1159
BtsIMutI	CAGTG	1 cut(s)	358
BveI	ACCTGC	2 cut(s)	256, 877
Cac8I	GCNNGC	2 cut(s)	925, 1236
CaiI	CAGNNNCTG	2 cut(s)	271, 1226
CciI	TCATGA	1 cut(s)	220
CfoI	GCGC	2 cut(s)	87, 561
Cfr13I	GGNCC	4 cut(s)	268, 325, 457, 877
CseI	GACGC	5 cut(s)	22, 68, 124, 197, 509
CviAII	CATG	3 cut(s)	70, 221, 802
DdeI	CTNAG	4 cut(s)	63, 350, 690, 1086
DpnI	GATC	6 cut(s)	50, 68, 312, 672, 1230, 1262
DpnII	GATC	6 cut(s)	48, 66, 310, 670, 1228, 1260
DraI	TTTAAA	1 cut(s)	855
Eam1104I	CTCTTC	5 cut(s)	131, 528, 623, 747, 990
EarI	CTCTTC	5 cut(s)	131, 528, 623, 747, 990
Eco130I	CCWWGG	1 cut(s)	192
Eco147I	AGGCCT	1 cut(s)	576
Eco32I	GATATC	2 cut(s)	430, 1064
Eco47I	GGWCC	2 cut(s)	268, 325
Eco57I	CTGAAG	1 cut(s)	971
EcoO109I	RGGNCCY	1 cut(s)	268
EcoRI	GAATTC	1 cut(s)	907
EcoRII	CCWGG	1 cut(s)	270
EcoRV	GATATC	2 cut(s)	430, 1064
EcoT14I	CCWWGG	1 cut(s)	192
ErhI	CCWWGG	1 cut(s)	192
FaeI	CATG	3 cut(s)	73, 224, 805
FatI	CATG	3 cut(s)	69, 220, 801
FauI	CCCGC	1 cut(s)	140
FbaI	TGATCA	1 cut(s)	1228
FblI	GTMKAC	1 cut(s)	36
Fnu4HI	GCNGC	5 cut(s)	440, 1164, 1221, 1224, 1307
FokI	GGATG	1 cut(s)	1166
Fsp4HI	GCNGC	5 cut(s)	440, 1164, 1221, 1224, 1307
FspBI	CTAG	1 cut(s)	1049
GlaI	GCGC	2 cut(s)	86, 560
GluI	GCNGC	5 cut(s)	440, 1164, 1221, 1224, 1307
GsuI	CTGGAG	1 cut(s)	1130
HaeII	RGCGCY	1 cut(s)	88
HaeIII	GGCC	3 cut(s)	459, 576, 878
HapII	CCGG	3 cut(s)	323, 460, 728
HgaI	GACGC	5 cut(s)	22, 68, 124, 197, 509
HhaI	GCGC	2 cut(s)	87, 561
Hin1I	GRCGYC	1 cut(s)	189
Hin1II	CATG	3 cut(s)	73, 224, 805
Hin6I	GCGC	2 cut(s)	85, 559
HinP1I	GCGC	2 cut(s)	85, 559
HincII	GTYRAC	1 cut(s)	37
HindII	GTYRAC	1 cut(s)	37
HinfI	GANTC	8 cut(s)	208, 215, 258, 415, 515, 686, 1118, 1181
HpaII	CCGG	3 cut(s)	323, 460, 728
HphI	GGTGA	5 cut(s)	109, 121, 394, 717, 916
Hpy166II	GTNNAC	1 cut(s)	37
Hpy188I	TCNGA	7 cut(s)	66, 82, 602, 658, 691, 975, 990
Hpy188III	TCNNGA	8 cut(s)	46, 149, 212, 221, 530, 711, 770, 1136
Hpy8I	GTNNAC	1 cut(s)	37
Hpy99I	CGWCG	3 cut(s)	38, 62, 191
HpyAV	CCTTC	3 cut(s)	566, 616, 769
HpyCH4III	ACNGT	2 cut(s)	935, 1102
HpyCH4V	TGCA	8 cut(s)	252, 454, 739, 805, 886, 1193, 1286, 1309
HpyF10VI	GCNNNNNNNGC	3 cut(s)	920, 1169, 1199
HpyF3I	CTNAG	4 cut(s)	63, 350, 690, 1086
Hsp92I	GRCGYC	1 cut(s)	189
Hsp92II	CATG	3 cut(s)	73, 224, 805
HspAI	GCGC	2 cut(s)	85, 559
Ksp22I	TGATCA	1 cut(s)	1228
Kzo9I	GATC	6 cut(s)	48, 66, 310, 670, 1228, 1260
LmnI	GCTCC	4 cut(s)	82, 196, 233, 436
Lsp1109I	GCAGC	5 cut(s)	451, 1150, 1232, 1235, 1293
LweI	GCATC	2 cut(s)	649, 873
MaeI	CTAG	1 cut(s)	1049
MaeIII	GTNAC	2 cut(s)	115, 723
MalI	GATC	6 cut(s)	50, 68, 312, 672, 1230, 1262
MboI	GATC	6 cut(s)	48, 66, 310, 670, 1228, 1260
MflI	RGATCY	1 cut(s)	310
MluCI	AATT	7 cut(s)	364, 554, 701, 714, 907, 917, 969
MslI	CAYNNNNRTG	1 cut(s)	1281
MspA1I	CMGCKG	1 cut(s)	1226
MspCI	CTTAAG	1 cut(s)	611
MspI	CCGG	3 cut(s)	323, 460, 728
MspR9I	CCNGG	2 cut(s)	272, 461
MvaI	CCWGG	1 cut(s)	272
MvnI	CGCG	2 cut(s)	33, 135
MwoI	GCNNNNNNNGC	3 cut(s)	920, 1169, 1199
NciI	CCSGG	1 cut(s)	461
NdeII	GATC	6 cut(s)	48, 66, 310, 670, 1228, 1260
NlaIII	CATG	3 cut(s)	73, 224, 805
NlaIV	GGNNCC	1 cut(s)	327
NmuCI	GTSAC	2 cut(s)	115, 723
PagI	TCATGA	1 cut(s)	220
PceI	AGGCCT	1 cut(s)	576
PfeI	GAWTC	8 cut(s)	208, 215, 258, 415, 515, 686, 1118, 1181
PflFI	GACNNNGTC	2 cut(s)	41, 113
PfoI	TCCNGGA	1 cut(s)	270
PkrI	GCNGC	5 cut(s)	441, 1165, 1222, 1225, 1308
PpuMI	RGGWCCY	1 cut(s)	268
Psp5II	RGGWCCY	1 cut(s)	268
Psp6I	CCWGG	1 cut(s)	270
PspGI	CCWGG	1 cut(s)	270
PspN4I	GGNNCC	1 cut(s)	327
PspPI	GGNCC	4 cut(s)	268, 325, 457, 877
PspPPI	RGGWCCY	1 cut(s)	268
PstI	CTGCAG	1 cut(s)	741
PstNI	CAGNNNCTG	2 cut(s)	271, 1226
PsuI	RGATCY	1 cut(s)	310
PsyI	GACNNNGTC	2 cut(s)	41, 113
PvuII	CAGCTG	1 cut(s)	1226
RseI	CAYNNNNRTG	1 cut(s)	1281
SalI	GTCGAC	1 cut(s)	35
SatI	GCNGC	5 cut(s)	440, 1164, 1221, 1224, 1307
Sau3AI	GATC	6 cut(s)	48, 66, 310, 670, 1228, 1260
Sau96I	GGNCC	4 cut(s)	268, 325, 457, 877
ScrFI	CCNGG	2 cut(s)	272, 461
SfaNI	GCATC	2 cut(s)	649, 873
SfcI	CTRYAG	2 cut(s)	737, 747
SinI	GGWCC	2 cut(s)	268, 325
SmiMI	CAYNNNNRTG	1 cut(s)	1281
SmlI	CTYRAG	2 cut(s)	611, 709
SmoI	CTYRAG	2 cut(s)	611, 709
Sse9I	AATT	7 cut(s)	364, 554, 701, 714, 907, 917, 969
SseBI	AGGCCT	1 cut(s)	576
SsiI	CCGC	3 cut(s)	133, 488, 1166
SspMI	CTAG	1 cut(s)	1049
StuI	AGGCCT	1 cut(s)	576
StyD4I	CCNGG	2 cut(s)	270, 459
StyI	CCWWGG	1 cut(s)	192
TaaI	ACNGT	2 cut(s)	935, 1102
TasI	AATT	7 cut(s)	364, 554, 701, 714, 907, 917, 969
TfiI	GAWTC	8 cut(s)	208, 215, 258, 415, 515, 686, 1118, 1181
TscAI	CASTG	1 cut(s)	358
TseFI	GTSAC	2 cut(s)	115, 723
TseI	GCWGC	5 cut(s)	439, 1163, 1220, 1223, 1306
Tsp45I	GTSAC	2 cut(s)	115, 723
TspDTI	ATGAA	4 cut(s)	377, 428, 804, 981
TspGWI	ACGGA	1 cut(s)	440
TspRI	CASTG	1 cut(s)	358
Tth111I	GACNNNGTC	2 cut(s)	41, 113
Vha464I	CTTAAG	1 cut(s)	611
VpaK11BI	GGWCC	2 cut(s)	268, 325
XapI	RAATTY	3 cut(s)	907, 917, 969
XmiI	GTMKAC	1 cut(s)	36
XspI	CTAG	1 cut(s)	1049

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.