Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8043290.1

Orthogroup ID

OG0002625

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 219

Gene Structure 219 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8043290.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 164 bp

atgtcgaagctggtatacccaaagctcagtcgcaccgagatcgtcacaatcctcgtcgaggctcagatcatcgctatttccgagcaggatcttctcaacccgaacccggatctcatcgccgacctctacacccgggtcctcaccaccttcgacttcctccccga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000070 GO:0000228 GO:0000278 GO:0000280 GO:0000775 GO:0000776 GO:0000777 GO:0000778 GO:0000779 GO:0000780 GO:0000793 GO:0000794 GO:0000819 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005773 GO:0005774 GO:0005815 GO:0005816 GO:0005856 GO:0005886 GO:0006996 GO:0007049 GO:0007059 GO:0007080 GO:0007127 GO:0008150 GO:0008608 GO:0009987 GO:0015630 GO:0016020 GO:0016043 GO:0022402 GO:0022414 GO:0031090 GO:0031262 GO:0031617 GO:0031974 GO:0031981 GO:0032991 GO:0035974 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044437 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0048285 GO:0050000 GO:0051179 GO:0051234 GO:0051276 GO:0051303 GO:0051310 GO:0051315 GO:0051316 GO:0051321 GO:0051455 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0061982 GO:0070013 GO:0071840 GO:0071944 GO:0098588 GO:0098687 GO:0098805 GO:0098813 GO:0140013 GO:0140014 GO:1903046 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nuf2

Protein Analysis

54

Amino Acids

6.13

Weight (kDa)

4.39

Isoelectric Point (pI)

38.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61000
fragaria_vesca	FvH4_6g25020 FvH4_6g25020 FvH4_6g25020 FvH4_6g25020 FvH4_6g25020 FvH4_6g25020 FvH4_7g06682 FvH4_7g06682 FvH4_7g06682 FvH4_7g06682 FvH4_7g06682
malus_domestica	MD08G1232500.v1.1 MD08G1233000.v1.1 MD15G1425300.v1.1
prunus_persica	Prupe.1G570900_v2.0.a1 Prupe.1G570900_v2.0.a1
pyrus_communis	pycom08g20190 pycom15g37700
rosa_chinensis	RchiOBHm_Chr1g0336301 RchiOBHm_Chr7g0222021
rosa_laevigata	RLG00000002102 RLG00000029374
rosa_multiflora	Rmu_co8043290.1_g000001 Rmu_sc0001453.1_g000009 Rmu_sc0004325.1_g000003
rosa_roxburghii	Rroxscaffold_3G00237490 Rroxscaffold_4G00315800
rosa_rugosa	Rorug01G0123600 Rorug07G0205100
rosa_samantha	Rh1AG144300 Rh1BG113700 Rh1CG135800 Rh1DG150800 Rh7AG345600 Rh7BG336200 Rh7CG363300 Rh7DG343900
rosa_wichuraiana	Rw0G015220 Rw7G029310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	15
AclWI	GGATC	2 cut(s)	96, 117
AfiI	CCNNNNNNNGG	2 cut(s)	58, 106
AluBI	AGCT	2 cut(s)	10, 25
AluI	AGCT	2 cut(s)	10, 25
AlwI	GGATC	2 cut(s)	96, 117
Ama87I	CYCGRG	1 cut(s)	132
AspS9I	GGNCC	1 cut(s)	136
AsuC2I	CCSGG	3 cut(s)	107, 133, 134
AsuHPI	GGTGA	1 cut(s)	133
AvaI	CYCGRG	1 cut(s)	132
AvaII	GGWCC	1 cut(s)	136
BarI	GAAGNNNNNNTAC	1 cut(s)	31
BcgI	CGANNNNNNTGC	2 cut(s)	22, 56
BcnI	CCSGG	3 cut(s)	107, 133, 134
Bme1390I	CCNGG	3 cut(s)	107, 133, 134
Bme18I	GGWCC	1 cut(s)	136
BmeT110I	CYCGRG	1 cut(s)	132
BmgT120I	GGNCC	1 cut(s)	136
BmiI	GGNNCC	1 cut(s)	137
BmrFI	CCNGG	3 cut(s)	107, 133, 134
BpuMI	CCSGG	3 cut(s)	107, 133, 134
BsaJI	CCNNGG	1 cut(s)	132
Bsc4I	CCNNNNNNNGG	2 cut(s)	58, 106
BseDI	CCNNGG	1 cut(s)	132
BseLI	CCNNNNNNNGG	2 cut(s)	58, 106
BseMII	CTCAG	2 cut(s)	40, 77
BsiHKCI	CYCGRG	1 cut(s)	132
BsiSI	CCGG	2 cut(s)	107, 133
BslI	CCNNNNNNNGG	2 cut(s)	58, 106
BsoBI	CYCGRG	1 cut(s)	132
Bsp143I	GATC	4 cut(s)	39, 66, 88, 109
BspCNI	CTCAG	2 cut(s)	39, 76
BspLI	GGNNCC	1 cut(s)	137
BspPI	GGATC	2 cut(s)	96, 117
BssECI	CCNNGG	1 cut(s)	132
BssMI	GATC	4 cut(s)	39, 66, 88, 109
BssNAI	GTATAC	1 cut(s)	16
Bst1107I	GTATAC	1 cut(s)	16
BstDEI	CTNAG	2 cut(s)	26, 63
BstENI	CCTNNNNNAGG	1 cut(s)	56
BstKTI	GATC	4 cut(s)	42, 69, 91, 112
BstMBI	GATC	4 cut(s)	39, 66, 88, 109
BstSCI	CCNGG	3 cut(s)	105, 131, 132
BstX2I	RGATCY	2 cut(s)	88, 109
BstYI	RGATCY	2 cut(s)	88, 109
BstZ17I	GTATAC	1 cut(s)	16
BtgZI	GCGATG	2 cut(s)	55, 100
Cfr13I	GGNCC	1 cut(s)	136
Cfr9I	CCCGGG	1 cut(s)	132
CviJI	RGCY	3 cut(s)	10, 25, 62
CviKI_1	RGCY	3 cut(s)	10, 25, 62
DdeI	CTNAG	2 cut(s)	26, 63
DpnI	GATC	4 cut(s)	41, 68, 90, 111
DpnII	GATC	4 cut(s)	39, 66, 88, 109
Eco47I	GGWCC	1 cut(s)	136
Eco88I	CYCGRG	1 cut(s)	132
EcoNI	CCTNNNNNAGG	1 cut(s)	56
EcoO109I	RGGNCCY	1 cut(s)	136
FaiI	YATR	1 cut(s)	16
FblI	GTMKAC	1 cut(s)	15
HapII	CCGG	2 cut(s)	107, 133
HpaII	CCGG	2 cut(s)	107, 133
HphI	GGTGA	1 cut(s)	133
Hpy166II	GTNNAC	1 cut(s)	16
Hpy188I	TCNGA	2 cut(s)	66, 82
Hpy8I	GTNNAC	1 cut(s)	16
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	1 cut(s)	157
HpyF3I	CTNAG	2 cut(s)	26, 63
Kzo9I	GATC	4 cut(s)	39, 66, 88, 109
LpnPI	CCDG	3 cut(s)	71, 120, 146
MaeIII	GTNAC	1 cut(s)	43
MalI	GATC	4 cut(s)	41, 68, 90, 111
MboI	GATC	4 cut(s)	39, 66, 88, 109
MboII	GAAGA	1 cut(s)	83
MflI	RGATCY	2 cut(s)	88, 109
MnlI	CCTC	4 cut(s)	52, 62, 134, 149
MspI	CCGG	2 cut(s)	107, 133
MspR9I	CCNGG	3 cut(s)	107, 133, 134
NciI	CCSGG	3 cut(s)	107, 133, 134
NdeII	GATC	4 cut(s)	39, 66, 88, 109
NlaIV	GGNNCC	1 cut(s)	137
NmuCI	GTSAC	1 cut(s)	43
PcsI	WCGNNNNNNNCGW	1 cut(s)	78
PpuMI	RGGWCCY	1 cut(s)	136
Psp5II	RGGWCCY	1 cut(s)	136
PspN4I	GGNNCC	1 cut(s)	137
PspPI	GGNCC	1 cut(s)	136
PspPPI	RGGWCCY	1 cut(s)	136
PsuI	RGATCY	2 cut(s)	88, 109
Sau3AI	GATC	4 cut(s)	39, 66, 88, 109
Sau96I	GGNCC	1 cut(s)	136
ScrFI	CCNGG	3 cut(s)	107, 133, 134
SetI	ASST	4 cut(s)	12, 27, 126, 149
SinI	GGWCC	1 cut(s)	136
SmaI	CCCGGG	1 cut(s)	134
StyD4I	CCNGG	3 cut(s)	105, 131, 132
TaqI	TCGA	3 cut(s)	5, 57, 150
TseFI	GTSAC	1 cut(s)	43
Tsp45I	GTSAC	1 cut(s)	43
TspMI	CCCGGG	1 cut(s)	132
VpaK11BI	GGWCC	1 cut(s)	136
XagI	CCTNNNNNAGG	1 cut(s)	56
XmaI	CCCGGG	1 cut(s)	132
XmiI	GTMKAC	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.