Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002625

Physical Location & Seq

Genomic Coordinates Forward (+)

25137441 .. 25143658

Gene Structure 6218 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00237490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1437 bp

ATGTCAAAGTTCGTATACCCTCGGCTGTCCCGGAGCGACATAGTGTCAATCGTGATGGACGCTCAGATCATGGATATTTCGGAGCAGCATCTTCTCAACCCCAACCCTGATTTCGTCGCCGACCTCTACACCCGCATCCTCATCGCTCTCGACTTCTTCAATCAGGATTTTGGGCAAGTTGATTTCGATGCCTTGCAGCAGTTTGAGAATCCTGATTTTCATGAGACCTCCCTCCACAGCATCAACCTCTGCAACAGAATCAAGCAAGTCCTCGCCTTAGTCGATTGCCCTTACAATTTCACCCTCAAAGATCTCCTCAGACCCGACCCCAATCGCACTGAGTACTTTCTCAGTGCTATTATCAATTACCATCTTTACAGAGAGACGAAAGTGAATCTACTCACCGAACTTATGAATCCGTTAACGGAGATTGAGGAGCAGCACCAATTGTTGCAGGGCCAGATTTCACAGTTGAATGCTGAGATTGCGGGTTTCAATGAAGCAAGAGAAAAGGAGTTGCCTCTTCTTCAGGAGGTAGATGCCAGAGTTAAAGAATTGCGCCAAACCATTGAAGGCCTTAACAACGACCAAGTTAAAGTCAGAACTTCTCTTAAGAAGTTGAAGGAGAAGAGTGGAGAAATGGACAAAGAGATTTCTGATGCTGATTTTGATCTGCTAAAATGTGATTCTGAGAGACAAGAATTACGTTCAAGAATTGTACAGTCACCAGATAAACTGCAGAGGGCTGTGGAAGAGAAGAAATCAATTCGAGAGAAGGCAAAGAATGATGAAATGTCAGCCATGCAATCTTTTAAGGAGAAGACTGCTGTTGAGGAGGTTTATACAAAGGTTCTAAAGAAATTATCAAAGCACTTGGCCCAGATGCAGGCTATACAAGAACAGGTCAATTCTGCTAAATTTGCGGGCAAAGACTATAAAGCATTAAAAGACAAAATAAGCGATGACGAAATCCTGATCAAGTCTCTTCAGAACGAAGTTGTGAAACGACAGGCAAAAGTGAAAGATTTGAATGACTTGAAAAGGAAGCTAGAAAGGGAAAGGGATCTAAAGTTTGAGGAGGCTACTAAAGAATTTAGTAATGTCAAGCTGGAGGTGGAATCAAGGAGGGGTGTTCTTGAAGCAAGGCAAAAGGATGTTGAAGCTGCAGTAGCAGAGGTGGATTCTATAACTGCAAAGGTTGCCTTAGTAAGAAAATCTGCAGCAGCTGATCAGCAAGCATTAGCTCATAAATTTCCACCAATATGCAAGTTCAATTGGGGTCTTGCTGCAATGATTGATAGAGCGTCAAAACTCAAAAGCTCATTGACCATGGAGCAGTTTGACAAGAAAGTTTCACCAGATGCTTCATCCCTCATACAAAAGAATGCACCTTCGGTTTCAACAAGGTTGCCTGCCTTTGCTTGCTATGCAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000070 GO:0000228 GO:0000278 GO:0000280 GO:0000775 GO:0000776 GO:0000777 GO:0000778 GO:0000779 GO:0000780 GO:0000793 GO:0000794 GO:0000819 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005773 GO:0005774 GO:0005815 GO:0005816 GO:0005856 GO:0005886 GO:0006996 GO:0007049 GO:0007059 GO:0007080 GO:0007127 GO:0008150 GO:0008608 GO:0009987 GO:0015630 GO:0016020 GO:0016043 GO:0022402 GO:0022414 GO:0031090 GO:0031262 GO:0031617 GO:0031974 GO:0031981 GO:0032991 GO:0035974 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044437 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0048285 GO:0050000 GO:0051179 GO:0051234 GO:0051276 GO:0051303 GO:0051310 GO:0051315 GO:0051316 GO:0051321 GO:0051455 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0061982 GO:0070013 GO:0071840 GO:0071944 GO:0098588 GO:0098687 GO:0098805 GO:0098813 GO:0140013 GO:0140014 GO:1903046 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nuf2

Protein Analysis

478

Amino Acids

54.74

Weight (kDa)

6.12

Isoelectric Point (pI)

36.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nuf2	PF03800	4 - 139	2.7e-28	Nuf2 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61000
fragaria_vesca	FvH4_6g25020 FvH4_6g25020 FvH4_6g25020 FvH4_6g25020 FvH4_6g25020 FvH4_6g25020 FvH4_7g06682 FvH4_7g06682 FvH4_7g06682 FvH4_7g06682 FvH4_7g06682
malus_domestica	MD08G1232500.v1.1 MD08G1233000.v1.1 MD15G1425300.v1.1
prunus_persica	Prupe.1G570900_v2.0.a1 Prupe.1G570900_v2.0.a1
pyrus_communis	pycom08g20190 pycom15g37700
rosa_chinensis	RchiOBHm_Chr1g0336301 RchiOBHm_Chr7g0222021
rosa_laevigata	RLG00000002102 RLG00000029374
rosa_multiflora	Rmu_co8043290.1_g000001 Rmu_sc0001453.1_g000009 Rmu_sc0004325.1_g000003
rosa_roxburghii	Rroxscaffold_3G00237490 Rroxscaffold_4G00315800
rosa_rugosa	Rorug01G0123600 Rorug07G0205100
rosa_samantha	Rh1AG144300 Rh1BG113700 Rh1CG135800 Rh1DG150800 Rh7AG345600 Rh7BG336200 Rh7CG363300 Rh7DG343900
rosa_wichuraiana	Rw0G015220 Rw7G029310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	15
AciI	CCGC	3 cut(s)	133, 488, 923
AclWI	GGATC	1 cut(s)	1071
AcsI	RAATTY	3 cut(s)	917, 1091, 1250
AcuI	CTGAAG	2 cut(s)	512, 971
AfaI	GTAC	2 cut(s)	344, 720
AfiI	CCNNNNNNNGG	1 cut(s)	886
AflII	CTTAAG	1 cut(s)	611
AhdI	GACNNNNNGTC	1 cut(s)	43
AjuI	GAANNNNNNNTTGG	2 cut(s)	95, 127
AluBI	AGCT	6 cut(s)	1048, 1108, 1163, 1226, 1244, 1320
AluI	AGCT	6 cut(s)	1048, 1108, 1163, 1226, 1244, 1320
Alw26I	GTCTC	4 cut(s)	218, 377, 688, 987
AlwI	GGATC	1 cut(s)	1071
AlwNI	CAGNNNCTG	1 cut(s)	1226
AoxI	GGCC	3 cut(s)	457, 574, 876
ApeKI	GCWGC	7 cut(s)	85, 196, 439, 1163, 1220, 1223, 1286
ApoI	RAATTY	3 cut(s)	917, 1091, 1250
AspLEI	GCGC	1 cut(s)	561
AspS9I	GGNCC	2 cut(s)	457, 877
AsuC2I	CCSGG	1 cut(s)	31
AsuHPI	GGTGA	4 cut(s)	292, 394, 717, 1347
BbsI	GAAGAC	1 cut(s)	827
BbvI	GCAGC	7 cut(s)	97, 208, 451, 1150, 1232, 1235, 1273
BccI	CCATC	2 cut(s)	49, 378
BcgI	CGANNNNNNTGC	2 cut(s)	124, 158
BclI	TGATCA	2 cut(s)	975, 1228
BcnI	CCSGG	1 cut(s)	31
BcoDI	GTCTC	4 cut(s)	218, 377, 688, 987
BfaI	CTAG	1 cut(s)	1049
BfmI	CTRYAG	3 cut(s)	737, 1164, 1218
BfrI	CTTAAG	1 cut(s)	611
BglII	AGATCT	1 cut(s)	310
BisI	GCNGC	7 cut(s)	86, 197, 440, 1164, 1221, 1224, 1287
BlsI	GCNGC	7 cut(s)	87, 198, 441, 1165, 1222, 1225, 1288
BmcAI	AGTACT	1 cut(s)	344
Bme1390I	CCNGG	1 cut(s)	31
BmeRI	GACNNNNNGTC	1 cut(s)	43
BmgT120I	GGNCC	2 cut(s)	457, 877
BmrFI	CCNGG	1 cut(s)	31
BmsI	GCATC	8 cut(s)	97, 144, 178, 249, 529, 649, 873, 1351
BpiI	GAAGAC	1 cut(s)	827
BpmI	CTGGAG	1 cut(s)	1130
BpuMI	CCSGG	1 cut(s)	31
BsaBI	GATNNNNATC	1 cut(s)	669
BsaI	GGTCTC	1 cut(s)	218
BsaJI	CCNNGG	2 cut(s)	20, 1329
Bsc4I	CCNNNNNNNGG	1 cut(s)	886
Bse3DI	GCAATG	1 cut(s)	1296
Bse8I	GATNNNNATC	1 cut(s)	669
BseDI	CCNNGG	2 cut(s)	20, 1329
BseGI	GGATG	3 cut(s)	135, 1159, 1367
BseJI	GATNNNNATC	1 cut(s)	669
BseLI	CCNNNNNNNGG	1 cut(s)	886
BseMI	GCAATG	1 cut(s)	1296
BseMII	CTCAG	6 cut(s)	77, 330, 331, 364, 471, 681
BseRI	GAGGAG	4 cut(s)	305, 449, 848, 1091
BseXI	GCAGC	7 cut(s)	97, 208, 451, 1150, 1232, 1235, 1273
BshFI	GGCC	3 cut(s)	459, 576, 878
BsiSI	CCGG	1 cut(s)	31
BslFI	GGGAC	1 cut(s)	13
BslI	CCNNNNNNNGG	1 cut(s)	886
BsmAI	GTCTC	4 cut(s)	218, 377, 688, 987
BsmBI	CGTCTC	1 cut(s)	377
BsmFI	GGGAC	1 cut(s)	13
BsmI	GAATGC	2 cut(s)	481, 1390
BsnI	GGCC	3 cut(s)	459, 576, 878
Bso31I	GGTCTC	1 cut(s)	218
Bsp1407I	TGTACA	1 cut(s)	718
Bsp143I	GATC	6 cut(s)	66, 310, 670, 975, 1063, 1228
Bsp19I	CCATGG	1 cut(s)	1329
BspACI	CCGC	3 cut(s)	133, 488, 923
BspANI	GGCC	3 cut(s)	459, 576, 878
BspCNI	CTCAG	6 cut(s)	76, 330, 331, 363, 472, 682
BspHI	TCATGA	1 cut(s)	220
BspMAI	CTGCAG	3 cut(s)	741, 1168, 1222
BspPI	GGATC	1 cut(s)	1071
BspTI	CTTAAG	1 cut(s)	611
BspTNI	GGTCTC	1 cut(s)	218
BsrDI	GCAATG	1 cut(s)	1296
BsrGI	TGTACA	1 cut(s)	718
BssECI	CCNNGG	2 cut(s)	20, 1329
BssMI	GATC	6 cut(s)	66, 310, 670, 975, 1063, 1228
BssNAI	GTATAC	1 cut(s)	16
BssT1I	CCWWGG	1 cut(s)	1329
Bst1107I	GTATAC	1 cut(s)	16
Bst4CI	ACNGT	2 cut(s)	471, 723
Bst6I	CTCTTC	4 cut(s)	528, 623, 747, 990
BstAFI	CTTAAG	1 cut(s)	611
BstAPI	GCANNNNNTGC	1 cut(s)	1199
BstAUI	TGTACA	1 cut(s)	718
BstC8I	GCNNGC	5 cut(s)	888, 925, 1236, 1413, 1423
BstDEI	CTNAG	8 cut(s)	63, 277, 317, 339, 350, 480, 690, 1204
BstDSI	CCRYGG	1 cut(s)	1329
BstF5I	GGATG	3 cut(s)	135, 1159, 1367
BstHHI	GCGC	1 cut(s)	561
BstKTI	GATC	6 cut(s)	69, 313, 673, 978, 1066, 1231
BstMAI	GTCTC	4 cut(s)	218, 377, 688, 987
BstMBI	GATC	6 cut(s)	66, 310, 670, 975, 1063, 1228
BstMWI	GCNNNNNNNGC	5 cut(s)	485, 920, 1169, 1199, 1427
BstSCI	CCNGG	1 cut(s)	29
BstSFI	CTRYAG	3 cut(s)	737, 1164, 1218
BstV1I	GCAGC	7 cut(s)	97, 208, 451, 1150, 1232, 1235, 1273
BstV2I	GAAGAC	1 cut(s)	827
BstX2I	RGATCY	2 cut(s)	310, 1063
BstYI	RGATCY	2 cut(s)	310, 1063
BstZ17I	GTATAC	1 cut(s)	16
BsuRI	GGCC	3 cut(s)	459, 576, 878
BtgI	CCRYGG	1 cut(s)	1329
BtgZI	GCGATG	2 cut(s)	127, 975
BtsCI	GGATG	3 cut(s)	135, 1159, 1367
BtsIMutI	CAGTG	2 cut(s)	336, 358
Cac8I	GCNNGC	5 cut(s)	888, 925, 1236, 1413, 1423
CaiI	CAGNNNCTG	1 cut(s)	1226
CciI	TCATGA	1 cut(s)	220
CfoI	GCGC	1 cut(s)	561
Cfr13I	GGNCC	2 cut(s)	457, 877
CseI	GACGC	2 cut(s)	68, 1293
Csp6I	GTAC	2 cut(s)	343, 719
CviAII	CATG	4 cut(s)	70, 221, 802, 1330
CviQI	GTAC	2 cut(s)	343, 719
DdeI	CTNAG	8 cut(s)	63, 277, 317, 339, 350, 480, 690, 1204
DpnI	GATC	6 cut(s)	68, 312, 672, 977, 1065, 1230
DpnII	GATC	6 cut(s)	66, 310, 670, 975, 1063, 1228
DriI	GACNNNNNGTC	1 cut(s)	43
Eam1104I	CTCTTC	4 cut(s)	528, 623, 747, 990
Eam1105I	GACNNNNNGTC	1 cut(s)	43
EarI	CTCTTC	4 cut(s)	528, 623, 747, 990
Eco130I	CCWWGG	1 cut(s)	1329
Eco147I	AGGCCT	1 cut(s)	576
Eco31I	GGTCTC	1 cut(s)	218
Eco57I	CTGAAG	2 cut(s)	512, 971
EcoT14I	CCWWGG	1 cut(s)	1329
ErhI	CCWWGG	1 cut(s)	1329
Esp3I	CGTCTC	1 cut(s)	377
FaeI	CATG	4 cut(s)	73, 224, 805, 1333
FalI	AAGNNNNNCTT	2 cut(s)	1187, 1219
FaqI	GGGAC	1 cut(s)	13
FatI	CATG	4 cut(s)	69, 220, 801, 1329
FauI	CCCGC	3 cut(s)	140, 481, 916
FbaI	TGATCA	2 cut(s)	975, 1228
FblI	GTMKAC	1 cut(s)	15
Fnu4HI	GCNGC	7 cut(s)	86, 197, 440, 1164, 1221, 1224, 1287
FokI	GGATG	3 cut(s)	122, 1166, 1354
Fsp4HI	GCNGC	7 cut(s)	86, 197, 440, 1164, 1221, 1224, 1287
FspBI	CTAG	1 cut(s)	1049
GlaI	GCGC	1 cut(s)	560
GluI	GCNGC	7 cut(s)	86, 197, 440, 1164, 1221, 1224, 1287
GsuI	CTGGAG	1 cut(s)	1130
HaeIII	GGCC	3 cut(s)	459, 576, 878
HapII	CCGG	1 cut(s)	31
HgaI	GACGC	2 cut(s)	68, 1293
HhaI	GCGC	1 cut(s)	561
Hin1II	CATG	4 cut(s)	73, 224, 805, 1333
Hin6I	GCGC	1 cut(s)	559
HinP1I	GCGC	1 cut(s)	559
HincII	GTYRAC	1 cut(s)	423
HindII	GTYRAC	1 cut(s)	423
HinfI	GANTC	7 cut(s)	208, 258, 394, 415, 686, 1118, 1181
HpaI	GTTAAC	1 cut(s)	423
HpaII	CCGG	1 cut(s)	31
HphI	GGTGA	4 cut(s)	292, 394, 717, 1347
Hpy166II	GTNNAC	2 cut(s)	16, 423
Hpy188I	TCNGA	7 cut(s)	66, 82, 320, 602, 658, 691, 990
Hpy8I	GTNNAC	2 cut(s)	16, 423
Hpy99I	CGWCG	1 cut(s)	119
HpyAV	CCTTC	4 cut(s)	566, 616, 769, 1401
HpyCH4III	ACNGT	2 cut(s)	471, 723
HpyCH4IV	ACGT	1 cut(s)	706
HpyF10VI	GCNNNNNNNGC	5 cut(s)	485, 920, 1169, 1199, 1427
HpyF3I	CTNAG	8 cut(s)	63, 277, 317, 339, 350, 480, 690, 1204
HpySE526I	ACGT	1 cut(s)	706
Hsp92II	CATG	4 cut(s)	73, 224, 805, 1333
HspAI	GCGC	1 cut(s)	559
Ksp22I	TGATCA	2 cut(s)	975, 1228
KspAI	GTTAAC	1 cut(s)	423
Kzo9I	GATC	6 cut(s)	66, 310, 670, 975, 1063, 1228
LmnI	GCTCC	4 cut(s)	33, 82, 436, 1333
Lsp1109I	GCAGC	7 cut(s)	97, 208, 451, 1150, 1232, 1235, 1273
LweI	GCATC	8 cut(s)	97, 144, 178, 249, 529, 649, 873, 1351
MaeI	CTAG	1 cut(s)	1049
MaeII	ACGT	1 cut(s)	706
MaeIII	GTNAC	1 cut(s)	723
MalI	GATC	6 cut(s)	68, 312, 672, 977, 1065, 1230
MboI	GATC	6 cut(s)	66, 310, 670, 975, 1063, 1228
MboII	GAAGA	9 cut(s)	83, 148, 515, 518, 640, 764, 769, 832, 977
MfeI	CAATTG	2 cut(s)	446, 1273
MflI	RGATCY	2 cut(s)	310, 1063
MseI	TTAA	7 cut(s)	422, 549, 579, 594, 612, 813, 944
MslI	CAYNNNNRTG	1 cut(s)	1261
MspA1I	CMGCKG	1 cut(s)	1226
MspCI	CTTAAG	1 cut(s)	611
MspI	CCGG	1 cut(s)	31
MspR9I	CCNGG	1 cut(s)	31
MunI	CAATTG	2 cut(s)	446, 1273
Mva1269I	GAATGC	2 cut(s)	481, 1390
MwoI	GCNNNNNNNGC	5 cut(s)	485, 920, 1169, 1199, 1427
NciI	CCSGG	1 cut(s)	31
NcoI	CCATGG	1 cut(s)	1329
NdeII	GATC	6 cut(s)	66, 310, 670, 975, 1063, 1228
NlaIII	CATG	4 cut(s)	73, 224, 805, 1333
NmuCI	GTSAC	1 cut(s)	723
PagI	TCATGA	1 cut(s)	220
PceI	AGGCCT	1 cut(s)	576
PcsI	WCGNNNNNNNCGW	1 cut(s)	279
PctI	GAATGC	2 cut(s)	481, 1390
PfeI	GAWTC	7 cut(s)	208, 258, 394, 415, 686, 1118, 1181
PfoI	TCCNGGA	1 cut(s)	29
PkrI	GCNGC	7 cut(s)	87, 198, 441, 1165, 1222, 1225, 1288
PspPI	GGNCC	2 cut(s)	457, 877
PstI	CTGCAG	3 cut(s)	741, 1168, 1222
PstNI	CAGNNNCTG	1 cut(s)	1226
PsuI	RGATCY	2 cut(s)	310, 1063
PvuII	CAGCTG	1 cut(s)	1226
RsaI	GTAC	2 cut(s)	344, 720
RsaNI	GTAC	2 cut(s)	343, 719
RseI	CAYNNNNRTG	1 cut(s)	1261
SaqAI	TTAA	7 cut(s)	422, 549, 579, 594, 612, 813, 944
SatI	GCNGC	7 cut(s)	86, 197, 440, 1164, 1221, 1224, 1287
Sau3AI	GATC	6 cut(s)	66, 310, 670, 975, 1063, 1228
Sau96I	GGNCC	2 cut(s)	457, 877
ScaI	AGTACT	1 cut(s)	344
ScrFI	CCNGG	1 cut(s)	31
SfaNI	GCATC	8 cut(s)	97, 144, 178, 249, 529, 649, 873, 1351
SfcI	CTRYAG	3 cut(s)	737, 1164, 1218
SmiMI	CAYNNNNRTG	1 cut(s)	1261
SmlI	CTYRAG	1 cut(s)	611
SmoI	CTYRAG	1 cut(s)	611
SseBI	AGGCCT	1 cut(s)	576
SsiI	CCGC	3 cut(s)	133, 488, 923
SspMI	CTAG	1 cut(s)	1049
StuI	AGGCCT	1 cut(s)	576
StyD4I	CCNGG	1 cut(s)	29
StyI	CCWWGG	1 cut(s)	1329
TaaI	ACNGT	2 cut(s)	471, 723
TaiI	ACGT	1 cut(s)	709
TaqI	TCGA	4 cut(s)	150, 186, 282, 769
TatI	WGTACW	2 cut(s)	342, 718
TfiI	GAWTC	7 cut(s)	208, 258, 394, 415, 686, 1118, 1181
Tru1I	TTAA	7 cut(s)	422, 549, 579, 594, 612, 813, 944
Tru9I	TTAA	7 cut(s)	422, 549, 579, 594, 612, 813, 944
TscAI	CASTG	2 cut(s)	343, 358
TseFI	GTSAC	1 cut(s)	723
TseI	GCWGC	7 cut(s)	85, 196, 439, 1163, 1220, 1223, 1286
Tsp45I	GTSAC	1 cut(s)	723
TspDTI	ATGAA	5 cut(s)	209, 428, 513, 804, 1356
TspGWI	ACGGA	2 cut(s)	408, 440
TspRI	CASTG	2 cut(s)	343, 358
Vha464I	CTTAAG	1 cut(s)	611
XapI	RAATTY	3 cut(s)	917, 1091, 1250
XmiI	GTMKAC	1 cut(s)	15
XspI	CTAG	1 cut(s)	1049
ZrmI	AGTACT	1 cut(s)	344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.