Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0002625

Physical Location & Seq

Genomic Coordinates Forward (+)

6735506 .. 6742620

Gene Structure 7115 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g06682.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGTCAAAGCTGGTATACCCTAAGCTGAGTCGCCGCGAGATCGTGACAATCCTCGTCGAGGCTCAGATCATCGCTATTTCGGAGCAGGATCTTCTCCACCCCAACCCCGATCTCATCTCCGACCTCTACACCCGCGTCCTCACCACCTTCTACTTCCTCCCCGAGGACGATGAGCAAGTCGATTTTGATTCCTTGGAGCTGCTCGAGAATCCGGATGTGCACGACATGTCGTCCCAGAGGGTCAGGCTGTGCAGCACATTGAAGCAGGTGATGGCGTTATTGGATTGCCCCAAGAAGTTTACCCTCGCGGATCTCTTAAGACCCGACCCGAATCGGACCGAGTATTTTCTGAGCGCCCTTCTCAATTACCATGTTTATAGAGAGACAAAAATAGATCTCGTGGCTAAAGTTGTGGATCAATTAACTCACCTTCAGAATGAGCACATATCGTGTGAGGGTCAGGTTTCTCAGTGGAATGCTGAGATTACACACTACAATGAAACAAAAGAAAAGGAGTTACCTCTTGTTGAGGAGGTAGATTCCAAAGTTAAAGAATTGCGCCAAACCATATCAGACCTTAACCTTGAACAAGTGAAACTGAGAACTTCTATTAGGAAGTTAAAAGAGAAGACTGCTGAAATGGATAAAGAGATATCTGATGCTGATTTTGATCTGCTCAAAAGTGATTCAGAAAGACAAGAGTTACGTTCAAAAATTGTTCATTCACCAGATAAACTGCAGAGAGCTTTAGCAGAGAAGAAATTAATTAAAGAGAATGCTACGAGTGATGAAATGTTAGCCATGCAATCTTTGAAGGAGAAGACTACTGTTGATGAGGTGTATACCAAGGTCTCCAAGAAATTGAAAAAGCACTTGGCCCAGATGCACTCTATACAAGAACAGGTCAATTCTGCTAAATCTACTATCAAAGAACACAGGGCTTTAGAAGAAAAAAAAAGTCATGATGAAGTCCTAAGCAAGGTTCTTCAGGATGAACAATTGAAACAGCAAGCAAAAGGTAATTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000070 GO:0000228 GO:0000278 GO:0000280 GO:0000775 GO:0000776 GO:0000777 GO:0000778 GO:0000779 GO:0000780 GO:0000793 GO:0000794 GO:0000819 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005773 GO:0005774 GO:0005815 GO:0005816 GO:0005856 GO:0005886 GO:0006996 GO:0007049 GO:0007059 GO:0007080 GO:0007127 GO:0008150 GO:0008608 GO:0009987 GO:0015630 GO:0016020 GO:0016043 GO:0022402 GO:0022414 GO:0031090 GO:0031262 GO:0031617 GO:0031974 GO:0031981 GO:0032991 GO:0035974 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044437 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0048285 GO:0050000 GO:0051179 GO:0051234 GO:0051276 GO:0051303 GO:0051310 GO:0051315 GO:0051316 GO:0051321 GO:0051455 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0061982 GO:0070013 GO:0071840 GO:0071944 GO:0098588 GO:0098687 GO:0098805 GO:0098813 GO:0140013 GO:0140014 GO:1903046 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nuf2

Protein Analysis

343

Amino Acids

39.65

Weight (kDa)

5.66

Isoelectric Point (pI)

38.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nuf2	PF03800	5 - 114	2.3e-18	Nuf2 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61000
fragaria_vesca	FvH4_6g25020 FvH4_6g25020 FvH4_6g25020 FvH4_6g25020 FvH4_6g25020 FvH4_6g25020 FvH4_7g06682 FvH4_7g06682 FvH4_7g06682 FvH4_7g06682 FvH4_7g06682
malus_domestica	MD08G1232500.v1.1 MD08G1233000.v1.1 MD15G1425300.v1.1
prunus_persica	Prupe.1G570900_v2.0.a1 Prupe.1G570900_v2.0.a1
pyrus_communis	pycom08g20190 pycom15g37700
rosa_chinensis	RchiOBHm_Chr1g0336301 RchiOBHm_Chr7g0222021
rosa_laevigata	RLG00000002102 RLG00000029374
rosa_multiflora	Rmu_co8043290.1_g000001 Rmu_sc0001453.1_g000009 Rmu_sc0004325.1_g000003
rosa_roxburghii	Rroxscaffold_3G00237490 Rroxscaffold_4G00315800
rosa_rugosa	Rorug01G0123600 Rorug07G0205100
rosa_samantha	Rh1AG144300 Rh1BG113700 Rh1CG135800 Rh1DG150800 Rh7AG345600 Rh7BG336200 Rh7CG363300 Rh7DG343900
rosa_wichuraiana	Rw0G015220 Rw7G029310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	256
Acc36I	ACCTGC	1 cut(s)	256
AccI	GTMKAC	2 cut(s)	15, 842
AccII	CGCG	3 cut(s)	36, 135, 308
AccIII	TCCGGA	1 cut(s)	211
AciI	CCGC	3 cut(s)	34, 133, 308
AclWI	GGATC	3 cut(s)	96, 318, 423
AcuI	CTGAAG	2 cut(s)	416, 971
AfiI	CCNNNNNNNGG	3 cut(s)	58, 163, 979
AflII	CTTAAG	1 cut(s)	316
AflIII	ACRYGT	1 cut(s)	225
AgsI	TTSAA	6 cut(s)	262, 587, 711, 814, 865, 1003
AhdI	GACNNNNNGTC	1 cut(s)	229
AjuI	GAANNNNNNNTTGG	2 cut(s)	857, 889
AluBI	AGCT	4 cut(s)	10, 25, 199, 746
AluI	AGCT	4 cut(s)	10, 25, 199, 746
Alw21I	GWGCWC	2 cut(s)	222, 444
Alw26I	GTCTC	2 cut(s)	377, 856
Alw44I	GTGCAC	1 cut(s)	218
AlwI	GGATC	3 cut(s)	96, 318, 423
Ama87I	CYCGRG	2 cut(s)	161, 203
Aor13HI	TCCGGA	1 cut(s)	211
AoxI	GGCC	1 cut(s)	876
ApaLI	GTGCAC	1 cut(s)	218
ApeKI	GCWGC	2 cut(s)	199, 252
AseI	ATTAAT	1 cut(s)	764
AspLEI	GCGC	2 cut(s)	356, 561
AspS9I	GGNCC	2 cut(s)	336, 877
AsuHPI	GGTGA	4 cut(s)	133, 280, 419, 717
AvaI	CYCGRG	2 cut(s)	161, 203
AvaII	GGWCC	1 cut(s)	336
BaeGI	GKGCMC	1 cut(s)	222
BauI	CACGAG	1 cut(s)	398
BbsI	GAAGAC	2 cut(s)	635, 827
Bbv12I	GWGCWC	2 cut(s)	222, 444
BbvI	GCAGC	2 cut(s)	186, 264
BccI	CCATC	1 cut(s)	265
BcoDI	GTCTC	2 cut(s)	377, 856
BfmI	CTRYAG	1 cut(s)	737
BfoI	RGCGCY	1 cut(s)	357
BfrI	CTTAAG	1 cut(s)	316
BfuAI	ACCTGC	1 cut(s)	256
BglII	AGATCT	1 cut(s)	394
BisI	GCNGC	3 cut(s)	34, 200, 253
BlsI	GCNGC	3 cut(s)	35, 201, 254
Bme18I	GGWCC	1 cut(s)	336
BmeRI	GACNNNNNGTC	1 cut(s)	229
BmeT110I	CYCGRG	2 cut(s)	161, 203
BmgT120I	GGNCC	2 cut(s)	336, 877
BmsI	GCATC	2 cut(s)	649, 873
BpiI	GAAGAC	2 cut(s)	635, 827
Bpu10I	CCTNAGC	2 cut(s)	21, 974
BsaBI	GATNNNNATC	1 cut(s)	669
BsaI	GGTCTC	1 cut(s)	856
BsaJI	CCNNGG	3 cut(s)	162, 192, 846
BsaWI	WCCGGW	1 cut(s)	211
Bsc4I	CCNNNNNNNGG	3 cut(s)	58, 163, 979
Bse8I	GATNNNNATC	1 cut(s)	669
BseAI	TCCGGA	1 cut(s)	211
BseDI	CCNNGG	3 cut(s)	162, 192, 846
BseGI	GGATG	2 cut(s)	220, 997
BseJI	GATNNNNATC	1 cut(s)	669
BseLI	CCNNNNNNNGG	3 cut(s)	58, 163, 979
BseMII	CTCAG	6 cut(s)	17, 77, 341, 471, 482, 590
BseRI	GAGGAG	1 cut(s)	545
BseSI	GKGCMC	1 cut(s)	222
BseXI	GCAGC	2 cut(s)	186, 264
BsgI	GTGCAG	1 cut(s)	271
Bsh1236I	CGCG	3 cut(s)	36, 135, 308
BshFI	GGCC	1 cut(s)	878
BsiHKAI	GWGCWC	2 cut(s)	222, 444
BsiHKCI	CYCGRG	2 cut(s)	161, 203
BsiSI	CCGG	1 cut(s)	212
BslFI	GGGAC	1 cut(s)	217
BslI	CCNNNNNNNGG	3 cut(s)	58, 163, 979
BsmAI	GTCTC	2 cut(s)	377, 856
BsmFI	GGGAC	1 cut(s)	217
BsmI	GAATGC	2 cut(s)	481, 781
BsnI	GGCC	1 cut(s)	878
Bso31I	GGTCTC	1 cut(s)	856
BsoBI	CYCGRG	2 cut(s)	161, 203
Bsp1286I	GDGCHC	2 cut(s)	222, 444
Bsp13I	TCCGGA	1 cut(s)	211
Bsp143I	GATC	8 cut(s)	39, 66, 88, 109, 310, 394, 415, 670
BspACI	CCGC	3 cut(s)	34, 133, 308
BspANI	GGCC	1 cut(s)	878
BspCNI	CTCAG	6 cut(s)	18, 76, 342, 472, 481, 591
BspEI	TCCGGA	1 cut(s)	211
BspFNI	CGCG	3 cut(s)	36, 135, 308
BspHI	TCATGA	1 cut(s)	961
BspMAI	CTGCAG	1 cut(s)	741
BspMI	ACCTGC	1 cut(s)	256
BspPI	GGATC	3 cut(s)	96, 318, 423
BspTI	CTTAAG	1 cut(s)	316
BspTNI	GGTCTC	1 cut(s)	856
BssECI	CCNNGG	3 cut(s)	162, 192, 846
BssMI	GATC	8 cut(s)	39, 66, 88, 109, 310, 394, 415, 670
BssNAI	GTATAC	2 cut(s)	16, 843
BssSI	CACGAG	1 cut(s)	398
BssT1I	CCWWGG	2 cut(s)	192, 846
Bst1107I	GTATAC	2 cut(s)	16, 843
Bst2BI	CACGAG	1 cut(s)	398
Bst4CI	ACNGT	1 cut(s)	829
BstAFI	CTTAAG	1 cut(s)	316
BstC8I	GCNNGC	1 cut(s)	1011
BstDEI	CTNAG	8 cut(s)	21, 26, 63, 350, 468, 480, 599, 974
BstENI	CCTNNNNNAGG	3 cut(s)	56, 161, 977
BstF5I	GGATG	2 cut(s)	220, 997
BstFNI	CGCG	3 cut(s)	36, 135, 308
BstH2I	RGCGCY	1 cut(s)	357
BstHHI	GCGC	2 cut(s)	356, 561
BstKTI	GATC	8 cut(s)	42, 69, 91, 112, 313, 397, 418, 673
BstMAI	GTCTC	2 cut(s)	377, 856
BstMBI	GATC	8 cut(s)	39, 66, 88, 109, 310, 394, 415, 670
BstNSI	RCATGY	1 cut(s)	229
BstSFI	CTRYAG	1 cut(s)	737
BstSLI	GKGCMC	1 cut(s)	222
BstUI	CGCG	3 cut(s)	36, 135, 308
BstV1I	GCAGC	2 cut(s)	186, 264
BstV2I	GAAGAC	2 cut(s)	635, 827
BstX2I	RGATCY	3 cut(s)	88, 310, 394
BstYI	RGATCY	3 cut(s)	88, 310, 394
BstZ17I	GTATAC	2 cut(s)	16, 843
BsuRI	GGCC	1 cut(s)	878
BtgZI	GCGATG	1 cut(s)	55
BtsCI	GGATG	2 cut(s)	220, 997
BtsIMutI	CAGTG	1 cut(s)	476
BveI	ACCTGC	1 cut(s)	256
Cac8I	GCNNGC	1 cut(s)	1011
CciI	TCATGA	1 cut(s)	961
CfoI	GCGC	2 cut(s)	356, 561
Cfr13I	GGNCC	2 cut(s)	336, 877
CpoI	CGGWCCG	1 cut(s)	336
CseI	GACGC	1 cut(s)	124
CspI	CGGWCCG	1 cut(s)	336
CviAII	CATG	4 cut(s)	226, 371, 802, 962
DdeI	CTNAG	8 cut(s)	21, 26, 63, 350, 468, 480, 599, 974
DpnI	GATC	8 cut(s)	41, 68, 90, 111, 312, 396, 417, 672
DpnII	GATC	8 cut(s)	39, 66, 88, 109, 310, 394, 415, 670
DriI	GACNNNNNGTC	1 cut(s)	229
Eam1105I	GACNNNNNGTC	1 cut(s)	229
Eco130I	CCWWGG	2 cut(s)	192, 846
Eco31I	GGTCTC	1 cut(s)	856
Eco32I	GATATC	1 cut(s)	654
Eco47I	GGWCC	1 cut(s)	336
Eco57I	CTGAAG	2 cut(s)	416, 971
Eco88I	CYCGRG	2 cut(s)	161, 203
EcoNI	CCTNNNNNAGG	3 cut(s)	56, 161, 977
EcoRV	GATATC	1 cut(s)	654
EcoT14I	CCWWGG	2 cut(s)	192, 846
ErhI	CCWWGG	2 cut(s)	192, 846
FaeI	CATG	4 cut(s)	229, 374, 805, 965
FaqI	GGGAC	1 cut(s)	217
FatI	CATG	4 cut(s)	225, 370, 801, 961
FauI	CCCGC	1 cut(s)	140
FblI	GTMKAC	2 cut(s)	15, 842
Fnu4HI	GCNGC	3 cut(s)	34, 200, 253
FokI	GGATG	2 cut(s)	227, 1004
Fsp4HI	GCNGC	3 cut(s)	34, 200, 253
GlaI	GCGC	2 cut(s)	355, 560
GluI	GCNGC	3 cut(s)	34, 200, 253
HaeII	RGCGCY	1 cut(s)	357
HaeIII	GGCC	1 cut(s)	878
HapII	CCGG	1 cut(s)	212
HgaI	GACGC	1 cut(s)	124
HhaI	GCGC	2 cut(s)	356, 561
Hin1II	CATG	4 cut(s)	229, 374, 805, 965
Hin6I	GCGC	2 cut(s)	354, 559
HinP1I	GCGC	2 cut(s)	354, 559
HinfI	GANTC	6 cut(s)	28, 188, 208, 331, 539, 686
HpaII	CCGG	1 cut(s)	212
HphI	GGTGA	4 cut(s)	133, 280, 419, 717
Hpy166II	GTNNAC	4 cut(s)	16, 220, 300, 843
Hpy188I	TCNGA	9 cut(s)	66, 82, 121, 336, 351, 435, 574, 658, 691
Hpy188III	TCNNGA	5 cut(s)	43, 205, 212, 962, 989
Hpy8I	GTNNAC	4 cut(s)	16, 220, 300, 843
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	4 cut(s)	157, 368, 440, 808
HpyCH4III	ACNGT	1 cut(s)	829
HpyCH4IV	ACGT	1 cut(s)	706
HpyCH4V	TGCA	5 cut(s)	220, 252, 739, 805, 886
HpyF3I	CTNAG	8 cut(s)	21, 26, 63, 350, 468, 480, 599, 974
HpySE526I	ACGT	1 cut(s)	706
Hsp92II	CATG	4 cut(s)	229, 374, 805, 965
HspAI	GCGC	2 cut(s)	354, 559
Kpn2I	TCCGGA	1 cut(s)	211
Kzo9I	GATC	8 cut(s)	39, 66, 88, 109, 310, 394, 415, 670
LmnI	GCTCC	2 cut(s)	82, 196
Lsp1109I	GCAGC	2 cut(s)	186, 264
LweI	GCATC	2 cut(s)	649, 873
MaeII	ACGT	1 cut(s)	706
MaeIII	GTNAC	3 cut(s)	43, 516, 702
MalI	GATC	8 cut(s)	41, 68, 90, 111, 312, 396, 417, 672
MboI	GATC	8 cut(s)	39, 66, 88, 109, 310, 394, 415, 670
MboII	GAAGA	6 cut(s)	83, 640, 769, 832, 959, 977
MfeI	CAATTG	1 cut(s)	998
MflI	RGATCY	3 cut(s)	88, 310, 394
MhlI	GDGCHC	2 cut(s)	222, 444
MlyI	GAGTC	1 cut(s)	37
MmeI	TCCRAC	1 cut(s)	144
MroI	TCCGGA	1 cut(s)	211
MseI	TTAA	8 cut(s)	317, 422, 549, 579, 620, 764, 768, 1027
MslI	CAYNNNNRTG	1 cut(s)	495
MspCI	CTTAAG	1 cut(s)	316
MspI	CCGG	1 cut(s)	212
MunI	CAATTG	1 cut(s)	998
Mva1269I	GAATGC	2 cut(s)	481, 781
MvnI	CGCG	3 cut(s)	36, 135, 308
NdeII	GATC	8 cut(s)	39, 66, 88, 109, 310, 394, 415, 670
NlaIII	CATG	4 cut(s)	229, 374, 805, 965
NmuCI	GTSAC	1 cut(s)	43
NspI	RCATGY	1 cut(s)	229
PacI	TTAATTAA	1 cut(s)	768
PaeR7I	CTCGAG	1 cut(s)	203
PagI	TCATGA	1 cut(s)	961
PaqCI	CACCTGC	1 cut(s)	256
PciI	ACATGT	1 cut(s)	225
PctI	GAATGC	2 cut(s)	481, 781
PfeI	GAWTC	5 cut(s)	188, 208, 331, 539, 686
PkrI	GCNGC	3 cut(s)	35, 201, 254
PleI	GAGTC	1 cut(s)	36
PpsI	GAGTC	1 cut(s)	36
PscI	ACATGT	1 cut(s)	225
PshBI	ATTAAT	1 cut(s)	764
PspPI	GGNCC	2 cut(s)	336, 877
PstI	CTGCAG	1 cut(s)	741
PsuI	RGATCY	3 cut(s)	88, 310, 394
RseI	CAYNNNNRTG	1 cut(s)	495
Rsr2I	CGGWCCG	1 cut(s)	336
RsrII	CGGWCCG	1 cut(s)	336
SaqAI	TTAA	8 cut(s)	317, 422, 549, 579, 620, 764, 768, 1027
SatI	GCNGC	3 cut(s)	34, 200, 253
Sau3AI	GATC	8 cut(s)	39, 66, 88, 109, 310, 394, 415, 670
Sau96I	GGNCC	2 cut(s)	336, 877
SchI	GAGTC	1 cut(s)	37
SduI	GDGCHC	2 cut(s)	222, 444
SfaNI	GCATC	2 cut(s)	649, 873
SfcI	CTRYAG	1 cut(s)	737
Sfr274I	CTCGAG	1 cut(s)	203
SinI	GGWCC	1 cut(s)	336
SlaI	CTCGAG	1 cut(s)	203
SmiMI	CAYNNNNRTG	1 cut(s)	495
SmlI	CTYRAG	2 cut(s)	203, 316
SmoI	CTYRAG	2 cut(s)	203, 316
SsiI	CCGC	3 cut(s)	34, 133, 308
StyI	CCWWGG	2 cut(s)	192, 846
TaaI	ACNGT	1 cut(s)	829
TaiI	ACGT	1 cut(s)	709
TaqI	TCGA	3 cut(s)	57, 180, 204
TaqII	GACCGA	1 cut(s)	353
TauI	GCSGC	1 cut(s)	36
TfiI	GAWTC	5 cut(s)	188, 208, 331, 539, 686
Tru1I	TTAA	8 cut(s)	317, 422, 549, 579, 620, 764, 768, 1027
Tru9I	TTAA	8 cut(s)	317, 422, 549, 579, 620, 764, 768, 1027
TscAI	CASTG	1 cut(s)	476
TseFI	GTSAC	1 cut(s)	43
TseI	GCWGC	2 cut(s)	199, 252
Tsp45I	GTSAC	1 cut(s)	43
TspDTI	ATGAA	5 cut(s)	513, 710, 804, 981, 1008
TspRI	CASTG	1 cut(s)	476
Vha464I	CTTAAG	1 cut(s)	316
VneI	GTGCAC	1 cut(s)	218
VpaK11BI	GGWCC	1 cut(s)	336
VspI	ATTAAT	1 cut(s)	764
XagI	CCTNNNNNAGG	3 cut(s)	56, 161, 977
XceI	RCATGY	1 cut(s)	229
XhoI	CTCGAG	1 cut(s)	203
XmiI	GTMKAC	2 cut(s)	15, 842

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.