Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0002625

Physical Location & Seq

Genomic Coordinates Forward (+)

29763790 .. 29771499

Gene Structure 7710 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG135800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1335 bp

ATGTCGAAGCTGGTATACCCAAAGCTCAGTCGCACCGAGATCGTCACAATCCTCGTCGAGGCTCAGATCATCGCTATTTCCGAGCAGGATCTTCTCAACCCGAACCCGGATCTCATCGCCGACCTCTACACCCGGATCCTCACCACCTTCGACTTCCTTCCCGAGGAAGATGAGCAAGTTGATTTTGATGCCTTGGAGCTGCTCGAGAATCCGGATTTTCACGACAAGTCGGCCCGGAGCATCAAGCTGTACAACACACTGAAGCAAGTGGTGGCCTTGTTGGATTGCCCTAAGAAATTTATCTACGCAGATCTCATAAGACCCGACCCGAATCGGACCGAGGTTTTTCTGAGTGCCCTTCTCAATTACCATGTATATAGAGAGACAAGAATAGATCTCGTAGCTAAAGTTGTGGATCAATTAACTGACCTTGAGAAGCAGCACATATGGTGGGGCGGTCAGGTTTCTCAGTGGAATGCTGAGATTGCACACTACAAAGAAACAAGAGAAAAGGAGTTACCTCTTGTTCAGGAGGTAGATTCCAAAGTCAAAGAATTGCGCCAAACCATATCAGACCTTAACCTTGATCAAGTGAAACTGAGAACTTCTATTAGGAAGTTAAAGGAGAAGGCTGCTGAAATGGATAAAGAGATGTCTGATGCTGATTTTGATCTGCTAAAAAGTGATTCGGAAAGACAAGAGTTTCGTTCAAAAATTGTTCATTCACCAGATAAACTGCAGAGAGCTTTAGCAGAGAAGAAATTAATTAGAGAGAAGGCTACGAGTGATGAAATGTTAGCCATGCAATCTTTGAAGGAGAAAACTGCTGTTGATGAGGTGTATGCAAAGGTTTCCAAGAAATTGTTAAAGCACTTGGCCCAGATGCATGCTATACAAGAACAGGTCAATTCTGCTAAATCTACTAGTAAAGACTACAGGGCTGTAAAAGAAAAAATAAGTGATGATGAAGTCCTAAGCAAGGTTCTTCATGATGAACTAATGAAACAGCAATCAAAAGTGAAAGAATTGAATGATTTCAAAAAGAAGTTGGAAAAAGAACGATATCTCAAGTTTGAGGAGGCTAGTAAAGAACTGAGTAATGTGAAGCTGGAGGTGGAATCTAGGAGGTGTGTGCTGGAAGCAAGGCAAAAGAATGTTGAAGGTGCAATAGCAGAGCTATGCAATTGGCAGGTGGAAACTATAACTGCAAAGACTGCATCAGTAAGAAAATCTGGAGCAGCTGATCAGCAACAATTAGCTCGTCGAAGTGAGGAGATCACTAAAGAGGTACGTACTTGGCCAATAGAGTCTTGTTTTCTTGCCTTGCTCAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000070 GO:0000228 GO:0000278 GO:0000280 GO:0000775 GO:0000776 GO:0000777 GO:0000778 GO:0000779 GO:0000780 GO:0000793 GO:0000794 GO:0000819 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005773 GO:0005774 GO:0005815 GO:0005816 GO:0005856 GO:0005886 GO:0006996 GO:0007049 GO:0007059 GO:0007080 GO:0007127 GO:0008150 GO:0008608 GO:0009987 GO:0015630 GO:0016020 GO:0016043 GO:0022402 GO:0022414 GO:0031090 GO:0031262 GO:0031617 GO:0031974 GO:0031981 GO:0032991 GO:0035974 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044437 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0048285 GO:0050000 GO:0051179 GO:0051234 GO:0051276 GO:0051303 GO:0051310 GO:0051315 GO:0051316 GO:0051321 GO:0051455 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0061982 GO:0070013 GO:0071840 GO:0071944 GO:0098588 GO:0098687 GO:0098805 GO:0098813 GO:0140013 GO:0140014 GO:1903046 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nuf2

Protein Analysis

444

Amino Acids

51.4

Weight (kDa)

5.94

Isoelectric Point (pI)

34.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nuf2	PF03800	5 - 140	5.9e-27	Nuf2 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61000
fragaria_vesca	FvH4_6g25020 FvH4_6g25020 FvH4_6g25020 FvH4_6g25020 FvH4_6g25020 FvH4_6g25020 FvH4_7g06682 FvH4_7g06682 FvH4_7g06682 FvH4_7g06682 FvH4_7g06682
malus_domestica	MD08G1232500.v1.1 MD08G1233000.v1.1 MD15G1425300.v1.1
prunus_persica	Prupe.1G570900_v2.0.a1 Prupe.1G570900_v2.0.a1
pyrus_communis	pycom08g20190 pycom15g37700
rosa_chinensis	RchiOBHm_Chr1g0336301 RchiOBHm_Chr7g0222021
rosa_laevigata	RLG00000002102 RLG00000029374
rosa_multiflora	Rmu_co8043290.1_g000001 Rmu_sc0001453.1_g000009 Rmu_sc0004325.1_g000003
rosa_roxburghii	Rroxscaffold_3G00237490 Rroxscaffold_4G00315800
rosa_rugosa	Rorug01G0123600 Rorug07G0205100
rosa_samantha	Rh1AG144300 Rh1BG113700 Rh1CG135800 Rh1DG150800 Rh7AG345600 Rh7BG336200 Rh7CG363300 Rh7DG343900
rosa_wichuraiana	Rw0G015220 Rw7G029310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1180
Acc36I	ACCTGC	1 cut(s)	1180
AccI	GTMKAC	1 cut(s)	15
AccIII	TCCGGA	1 cut(s)	211
AciI	CCGC	1 cut(s)	456
AclWI	GGATC	5 cut(s)	96, 117, 130, 143, 423
AcoI	YGGCCR	1 cut(s)	1298
AcsI	RAATTY	1 cut(s)	296
AcuI	CTGAAG	1 cut(s)	281
AfaI	GTAC	3 cut(s)	251, 1290, 1294
AfiI	CCNNNNNNNGG	4 cut(s)	58, 106, 163, 979
AgsI	TTSAA	5 cut(s)	711, 814, 1030, 1039, 1160
AhlI	ACTAGT	1 cut(s)	923
Alw26I	GTCTC	1 cut(s)	377
AlwI	GGATC	5 cut(s)	96, 117, 130, 143, 423
Ama87I	CYCGRG	2 cut(s)	161, 203
Aor13HI	TCCGGA	1 cut(s)	211
AoxI	GGCC	4 cut(s)	231, 273, 876, 1298
ApeKI	GCWGC	4 cut(s)	199, 439, 632, 1238
ApoI	RAATTY	1 cut(s)	296
ArsI	GACNNNNNNTTYG	2 cut(s)	687, 719
AseI	ATTAAT	1 cut(s)	764
Asp700I	GAANNNNTTC	1 cut(s)	1034
AspLEI	GCGC	1 cut(s)	561
AspS9I	GGNCC	3 cut(s)	232, 336, 877
AsuC2I	CCSGG	3 cut(s)	107, 133, 235
AsuHPI	GGTGA	2 cut(s)	133, 717
AvaI	CYCGRG	2 cut(s)	161, 203
AvaII	GGWCC	1 cut(s)	336
BaeGI	GKGCMC	1 cut(s)	358
BalI	TGGCCA	1 cut(s)	1300
BamHI	GGATCC	1 cut(s)	135
BarI	GAAGNNNNNNTAC	1 cut(s)	31
BbvI	GCAGC	4 cut(s)	186, 451, 619, 1250
BcgI	CGANNNNNNTGC	2 cut(s)	22, 56
BclI	TGATCA	2 cut(s)	586, 1243
BcnI	CCSGG	3 cut(s)	107, 133, 235
BcoDI	GTCTC	1 cut(s)	377
BcuI	ACTAGT	1 cut(s)	923
BfaI	CTAG	4 cut(s)	924, 1083, 1122, 1333
BfmI	CTRYAG	2 cut(s)	737, 934
BfuAI	ACCTGC	1 cut(s)	1180
BglII	AGATCT	2 cut(s)	310, 394
BisI	GCNGC	4 cut(s)	200, 440, 633, 1239
BlsI	GCNGC	4 cut(s)	201, 441, 634, 1240
Bme1390I	CCNGG	3 cut(s)	107, 133, 235
Bme18I	GGWCC	1 cut(s)	336
BmeT110I	CYCGRG	2 cut(s)	161, 203
BmgT120I	GGNCC	3 cut(s)	232, 336, 877
BmiI	GGNNCC	1 cut(s)	137
BmrFI	CCNGG	3 cut(s)	107, 133, 235
BmsI	GCATC	5 cut(s)	178, 249, 649, 873, 1226
BpmI	CTGGAG	2 cut(s)	1130, 1254
Bpu10I	CCTNAGC	1 cut(s)	974
BpuEI	CTTGAG	2 cut(s)	452, 1052
BpuMI	CCSGG	3 cut(s)	107, 133, 235
BsaAI	YACGTR	1 cut(s)	1292
BsaBI	GATNNNNATC	1 cut(s)	669
BsaJI	CCNNGG	3 cut(s)	162, 192, 339
BsaWI	WCCGGW	1 cut(s)	211
Bsc4I	CCNNNNNNNGG	4 cut(s)	58, 106, 163, 979
Bse8I	GATNNNNATC	1 cut(s)	669
BseAI	TCCGGA	1 cut(s)	211
BseDI	CCNNGG	3 cut(s)	162, 192, 339
BseJI	GATNNNNATC	1 cut(s)	669
BseLI	CCNNNNNNNGG	4 cut(s)	58, 106, 163, 979
BseMII	CTCAG	7 cut(s)	40, 77, 341, 471, 482, 590, 1085
BseRI	GAGGAG	2 cut(s)	1091, 1286
BseSI	GKGCMC	1 cut(s)	358
BseXI	GCAGC	4 cut(s)	186, 451, 619, 1250
BshFI	GGCC	4 cut(s)	233, 275, 878, 1300
BsiHKCI	CYCGRG	2 cut(s)	161, 203
BsiSI	CCGG	4 cut(s)	107, 133, 212, 235
BslI	CCNNNNNNNGG	4 cut(s)	58, 106, 163, 979
BsmAI	GTCTC	1 cut(s)	377
BsmI	GAATGC	1 cut(s)	481
BsnI	GGCC	4 cut(s)	233, 275, 878, 1300
BsoBI	CYCGRG	2 cut(s)	161, 203
Bsp1286I	GDGCHC	1 cut(s)	358
Bsp13I	TCCGGA	1 cut(s)	211
Bsp1407I	TGTACA	1 cut(s)	249
BspACI	CCGC	1 cut(s)	456
BspANI	GGCC	4 cut(s)	233, 275, 878, 1300
BspCNI	CTCAG	7 cut(s)	39, 76, 342, 472, 481, 591, 1086
BspEI	TCCGGA	1 cut(s)	211
BspHI	TCATGA	1 cut(s)	988
BspLI	GGNNCC	1 cut(s)	137
BspMAI	CTGCAG	1 cut(s)	741
BspMI	ACCTGC	1 cut(s)	1180
BspPI	GGATC	5 cut(s)	96, 117, 130, 143, 423
BsrGI	TGTACA	1 cut(s)	249
BssECI	CCNNGG	3 cut(s)	162, 192, 339
BssNAI	GTATAC	1 cut(s)	16
BssT1I	CCWWGG	1 cut(s)	192
Bst1107I	GTATAC	1 cut(s)	16
BstAPI	GCANNNNNTGC	1 cut(s)	1214
BstAUI	TGTACA	1 cut(s)	249
BstBAI	YACGTR	1 cut(s)	1292
BstC8I	GCNNGC	1 cut(s)	888
BstDEI	CTNAG	9 cut(s)	26, 63, 291, 350, 468, 480, 599, 974, 1094
BstENI	CCTNNNNNAGG	3 cut(s)	56, 161, 977
BstHHI	GCGC	1 cut(s)	561
BstMAI	GTCTC	1 cut(s)	377
BstMWI	GCNNNNNNNGC	2 cut(s)	485, 1214
BstNSI	RCATGY	1 cut(s)	890
BstSCI	CCNGG	3 cut(s)	105, 131, 233
BstSFI	CTRYAG	2 cut(s)	737, 934
BstSLI	GKGCMC	1 cut(s)	358
BstSNI	TACGTA	1 cut(s)	1292
BstV1I	GCAGC	4 cut(s)	186, 451, 619, 1250
BstX2I	RGATCY	5 cut(s)	88, 109, 135, 310, 394
BstYI	RGATCY	5 cut(s)	88, 109, 135, 310, 394
BstZ17I	GTATAC	1 cut(s)	16
BsuRI	GGCC	4 cut(s)	233, 275, 878, 1300
BtgZI	GCGATG	2 cut(s)	55, 100
BtsIMutI	CAGTG	2 cut(s)	257, 476
BveI	ACCTGC	1 cut(s)	1180
Cac8I	GCNNGC	1 cut(s)	888
CciI	TCATGA	1 cut(s)	988
CfoI	GCGC	1 cut(s)	561
Cfr13I	GGNCC	3 cut(s)	232, 336, 877
CpoI	CGGWCCG	1 cut(s)	336
Csp6I	GTAC	3 cut(s)	250, 1289, 1293
CspI	CGGWCCG	1 cut(s)	336
CviAII	CATG	4 cut(s)	371, 802, 887, 989
CviQI	GTAC	3 cut(s)	250, 1289, 1293
DdeI	CTNAG	9 cut(s)	26, 63, 291, 350, 468, 480, 599, 974, 1094
EaeI	YGGCCR	1 cut(s)	1298
Eco105I	TACGTA	1 cut(s)	1292
Eco130I	CCWWGG	1 cut(s)	192
Eco32I	GATATC	1 cut(s)	1064
Eco47I	GGWCC	1 cut(s)	336
Eco57I	CTGAAG	1 cut(s)	281
Eco88I	CYCGRG	2 cut(s)	161, 203
EcoNI	CCTNNNNNAGG	3 cut(s)	56, 161, 977
EcoRV	GATATC	1 cut(s)	1064
EcoT14I	CCWWGG	1 cut(s)	192
EcoT22I	ATGCAT	1 cut(s)	888
ErhI	CCWWGG	1 cut(s)	192
FaeI	CATG	4 cut(s)	374, 805, 890, 992
FatI	CATG	4 cut(s)	370, 801, 886, 988
FauNDI	CATATG	1 cut(s)	446
FbaI	TGATCA	2 cut(s)	586, 1243
FblI	GTMKAC	1 cut(s)	15
Fnu4HI	GCNGC	4 cut(s)	200, 440, 633, 1239
Fsp4HI	GCNGC	4 cut(s)	200, 440, 633, 1239
FspBI	CTAG	4 cut(s)	924, 1083, 1122, 1333
GlaI	GCGC	1 cut(s)	560
GluI	GCNGC	4 cut(s)	200, 440, 633, 1239
GsuI	CTGGAG	2 cut(s)	1130, 1254
HaeIII	GGCC	4 cut(s)	233, 275, 878, 1300
HapII	CCGG	4 cut(s)	107, 133, 212, 235
HhaI	GCGC	1 cut(s)	561
Hin1II	CATG	4 cut(s)	374, 805, 890, 992
Hin6I	GCGC	1 cut(s)	559
HinP1I	GCGC	1 cut(s)	559
HinfI	GANTC	6 cut(s)	208, 331, 539, 686, 1118, 1307
HpaII	CCGG	4 cut(s)	107, 133, 212, 235
HphI	GGTGA	2 cut(s)	133, 717
Hpy166II	GTNNAC	1 cut(s)	16
Hpy188I	TCNGA	7 cut(s)	66, 82, 336, 351, 574, 658, 691
Hpy188III	TCNNGA	7 cut(s)	161, 205, 212, 221, 530, 989, 1233
Hpy8I	GTNNAC	1 cut(s)	16
Hpy99I	CGWCG	2 cut(s)	59, 1266
HpyAV	CCTTC	7 cut(s)	157, 167, 368, 622, 769, 808, 1154
HpyCH4IV	ACGT	1 cut(s)	1291
HpyCH4V	TGCA	9 cut(s)	488, 739, 805, 845, 886, 1166, 1182, 1208, 1217
HpyF10VI	GCNNNNNNNGC	2 cut(s)	485, 1214
HpyF3I	CTNAG	9 cut(s)	26, 63, 291, 350, 468, 480, 599, 974, 1094
HpySE526I	ACGT	1 cut(s)	1291
Hsp92II	CATG	4 cut(s)	374, 805, 890, 992
HspAI	GCGC	1 cut(s)	559
Kpn2I	TCCGGA	1 cut(s)	211
Ksp22I	TGATCA	2 cut(s)	586, 1243
LmnI	GCTCC	3 cut(s)	196, 237, 1235
Lsp1109I	GCAGC	4 cut(s)	186, 451, 619, 1250
LweI	GCATC	5 cut(s)	178, 249, 649, 873, 1226
MaeI	CTAG	4 cut(s)	924, 1083, 1122, 1333
MaeII	ACGT	1 cut(s)	1291
MaeIII	GTNAC	2 cut(s)	43, 516
MboII	GAAGA	4 cut(s)	83, 179, 769, 977
MfeI	CAATTG	1 cut(s)	1183
MflI	RGATCY	5 cut(s)	88, 109, 135, 310, 394
MhlI	GDGCHC	1 cut(s)	358
MlsI	TGGCCA	1 cut(s)	1300
MluNI	TGGCCA	1 cut(s)	1300
MlyI	GAGTC	1 cut(s)	1316
MmeI	TCCRAC	2 cut(s)	261, 1029
Mox20I	TGGCCA	1 cut(s)	1300
Mph1103I	ATGCAT	1 cut(s)	888
MroI	TCCGGA	1 cut(s)	211
MroXI	GAANNNNTTC	1 cut(s)	1034
MscI	TGGCCA	1 cut(s)	1300
MseI	TTAA	5 cut(s)	422, 579, 620, 764, 866
Msp20I	TGGCCA	1 cut(s)	1300
MspA1I	CMGCKG	1 cut(s)	1241
MspI	CCGG	4 cut(s)	107, 133, 212, 235
MspR9I	CCNGG	3 cut(s)	107, 133, 235
MunI	CAATTG	1 cut(s)	1183
Mva1269I	GAATGC	1 cut(s)	481
MwoI	GCNNNNNNNGC	2 cut(s)	485, 1214
NciI	CCSGG	3 cut(s)	107, 133, 235
NdeI	CATATG	1 cut(s)	446
NlaIII	CATG	4 cut(s)	374, 805, 890, 992
NlaIV	GGNNCC	1 cut(s)	137
NmuCI	GTSAC	1 cut(s)	43
NsiI	ATGCAT	1 cut(s)	888
NspI	RCATGY	1 cut(s)	890
PaeI	GCATGC	1 cut(s)	890
PaeR7I	CTCGAG	1 cut(s)	203
PagI	TCATGA	1 cut(s)	988
PaqCI	CACCTGC	1 cut(s)	1180
PcsI	WCGNNNNNNNCGW	1 cut(s)	78
PctI	GAATGC	1 cut(s)	481
PdmI	GAANNNNTTC	1 cut(s)	1034
PfeI	GAWTC	5 cut(s)	208, 331, 539, 686, 1118
PkrI	GCNGC	4 cut(s)	201, 441, 634, 1240
PleI	GAGTC	1 cut(s)	1315
PpsI	GAGTC	1 cut(s)	1315
Ppu21I	YACGTR	1 cut(s)	1292
PshBI	ATTAAT	1 cut(s)	764
PspN4I	GGNNCC	1 cut(s)	137
PspPI	GGNCC	3 cut(s)	232, 336, 877
PstI	CTGCAG	1 cut(s)	741
PsuI	RGATCY	5 cut(s)	88, 109, 135, 310, 394
PvuII	CAGCTG	1 cut(s)	1241
RsaI	GTAC	3 cut(s)	251, 1290, 1294
RsaNI	GTAC	3 cut(s)	250, 1289, 1293
Rsr2I	CGGWCCG	1 cut(s)	336
RsrII	CGGWCCG	1 cut(s)	336
SaqAI	TTAA	5 cut(s)	422, 579, 620, 764, 866
SatI	GCNGC	4 cut(s)	200, 440, 633, 1239
Sau96I	GGNCC	3 cut(s)	232, 336, 877
SchI	GAGTC	1 cut(s)	1316
ScrFI	CCNGG	3 cut(s)	107, 133, 235
SduI	GDGCHC	1 cut(s)	358
SfaNI	GCATC	5 cut(s)	178, 249, 649, 873, 1226
SfcI	CTRYAG	2 cut(s)	737, 934
Sfr274I	CTCGAG	1 cut(s)	203
SinI	GGWCC	1 cut(s)	336
SlaI	CTCGAG	1 cut(s)	203
SmlI	CTYRAG	3 cut(s)	203, 431, 1067
SmoI	CTYRAG	3 cut(s)	203, 431, 1067
SnaBI	TACGTA	1 cut(s)	1292
SpeI	ACTAGT	1 cut(s)	923
SphI	GCATGC	1 cut(s)	890
SsiI	CCGC	1 cut(s)	456
SspMI	CTAG	4 cut(s)	924, 1083, 1122, 1333
StyD4I	CCNGG	3 cut(s)	105, 131, 233
StyI	CCWWGG	1 cut(s)	192
TaiI	ACGT	1 cut(s)	1294
TaqI	TCGA	5 cut(s)	5, 57, 150, 204, 1264
TaqII	GACCGA	1 cut(s)	353
TatI	WGTACW	1 cut(s)	249
TfiI	GAWTC	5 cut(s)	208, 331, 539, 686, 1118
Tru1I	TTAA	5 cut(s)	422, 579, 620, 764, 866
Tru9I	TTAA	5 cut(s)	422, 579, 620, 764, 866
TscAI	CASTG	2 cut(s)	264, 476
TseFI	GTSAC	1 cut(s)	43
TseI	GCWGC	4 cut(s)	199, 439, 632, 1238
Tsp45I	GTSAC	1 cut(s)	43
TspDTI	ATGAA	6 cut(s)	710, 804, 977, 981, 1008, 1016
TspRI	CASTG	2 cut(s)	264, 476
VpaK11BI	GGWCC	1 cut(s)	336
VspI	ATTAAT	1 cut(s)	764
XagI	CCTNNNNNAGG	3 cut(s)	56, 161, 977
XapI	RAATTY	1 cut(s)	296
XceI	RCATGY	1 cut(s)	890
XhoI	CTCGAG	1 cut(s)	203
XmiI	GTMKAC	1 cut(s)	15
XmnI	GAANNNNTTC	1 cut(s)	1034
XspI	CTAG	4 cut(s)	924, 1083, 1122, 1333
Zsp2I	ATGCAT	1 cut(s)	888

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.