Rmu_sc0004325.1_g000003

Kinetochore protein Nuf2

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004325.1
Physical Location & Seq
Forward (+)
6366 .. 13092
6727 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004325.1_g000003.1.cds

Sequence Viewer

Length: 1506 bp
atgacctctttggagacttcctgggaggtttttaggaaagtcctgttggcggcggctagtgacgggaatcaggcgaaagttggccagaatccgacgaccggtgacggggttccggcgaagtctcctatggtggtggtagaagtggtggcgcctaggcggcttgatctgggttgtggtcgatggtggatgttggacagcttaggcttctatcttgctgggctggctagcgacatagtgtcaatcgtgatggacgctcagatcatggatatttcggagcaccatctcctcaaccccaaccctgatttcgtcgccgacctctacacccgcatcctcatcgctctcgacttcttcaaccaggattttgggcaagttgatttcgatgccttgcagcagtttgagaatcccgattttcatgagacctccctccacagcatcaacctctgcaacagaatcaagcaagtcctcgccttagtcgattgcccttacaatttcaccctcaaagatctcctcagacccgaccccaatcgcaccgagtattttctcagtgctattatcaattaccatctttacagagagacgaaggtgaatctactcaccgaacttatgaacccgttaacggagattgaggagcagcaccaattgctgcagggccagatttcacagttgaatgctgagattgcgggtttcaatgaagcaagagaaaaggagttgcctcttcttcaagaggtagatgccagagttagagaattgcgccaaaccattgaaggccttaacaacgaccaagttaaagtcagaacttctcttaagaagttgaaggagaagagtggagaaatggacaaacagatttctgatgctgattttgatctgctaaaatgtgattccgagagacaagaattacgttcaagaattgtacagtcaccagataaactgcagagggctgtagaagagaagaaatcaattcaagagaaggcaaagaatgatgaaatgtcagccatgcaatcttttaaggagaagactgctgttgaggaggtttatacgaaggttctaaagaaattatcaaagcacttggcccagatgcaagttatacaagaacaggtcaattctgctaaatttgctggcaaagactataaagcattaaaagataaaataagtgatgatgaaatcctgattaagtctcttcagaacgaagttgtgaaacgacaggcaaaagtgaaagatttgaatgacttgaaaaggaaactagaaaaggaaagagatctaaagtttgaggaggctactaaagaatatagtaatgtcaagctggaggtggaatcaaggaggggtgttcttgaagcaaggcaaaaggatgttgaagctgcagtagcagaggtggattctataactgcaaaggttgcctcggtaagaaaatctgcagcagccgatcagcaagcattagctcataagtgtgaggagatcattaaagagttccaccaatatgcaagttcaattggggtcttgctgcaatga

Protein Analysis

501

Amino Acids

57.01

Weight (kDa)

5.48

Isoelectric Point (pI)

35.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 148
AciI CCGC 5 cut(s) 50, 53, 157, 325, 680
AcoI YGGCCR 1 cut(s) 82
AcsI RAATTY 1 cut(s) 1109
AcuI CTGAAG 1 cut(s) 1163
AcyI GRCGYC 1 cut(s) 149
AfaI GTAC 1 cut(s) 912
AfiI CCNNNNNNNGG 4 cut(s) 49, 98, 105, 616
AflII CTTAAG 1 cut(s) 803
AgeI ACCGGT 1 cut(s) 98
AhdI GACNNNNNGTC 1 cut(s) 235
AjnI CCWGG 2 cut(s) 20, 354
AjuI GAANNNNNNNTTGG 4 cut(s) 29, 61, 287, 319
AluBI AGCT 4 cut(s) 198, 1300, 1355, 1436
AluI AGCT 4 cut(s) 198, 1300, 1355, 1436
Alw21I GWGCWC 1 cut(s) 279
Alw26I GTCTC 6 cut(s) 8, 126, 410, 569, 880, 1179
AoxI GGCC 4 cut(s) 82, 649, 766, 1068
ApeKI GCWGC 7 cut(s) 388, 631, 643, 1355, 1412, 1415, 1498
ApoI RAATTY 1 cut(s) 1109
AsiGI ACCGGT 1 cut(s) 98
AspA2I CCTAGG 1 cut(s) 152
AspLEI GCGC 2 cut(s) 151, 753
AspS9I GGNCC 2 cut(s) 649, 1069
AsuHPI GGTGA 5 cut(s) 113, 484, 586, 595, 909
AsuNHI GCTAGC 1 cut(s) 224
AvrII CCTAGG 1 cut(s) 152
BalI TGGCCA 1 cut(s) 84
BanI GGYRCC 1 cut(s) 148
BbsI GAAGAC 1 cut(s) 1019
Bbv12I GWGCWC 1 cut(s) 279
BbvI GCAGC 7 cut(s) 400, 630, 643, 1342, 1424, 1427, 1485
BccI CCATC 4 cut(s) 174, 241, 288, 570
BcgI CGANNNNNNTGC 2 cut(s) 316, 350
BciT130I CCWGG 2 cut(s) 22, 356
BcoDI GTCTC 6 cut(s) 8, 126, 410, 569, 880, 1179
BfaI CTAG 4 cut(s) 57, 153, 225, 1241
BfmI CTRYAG 5 cut(s) 644, 929, 939, 1356, 1410
BfoI RGCGCY 1 cut(s) 152
BfrI CTTAAG 1 cut(s) 803
BglI GCCNNNNNGGC 1 cut(s) 157
BglII AGATCT 2 cut(s) 502, 1255
BlnI CCTAGG 1 cut(s) 152
Bme1390I CCNGG 2 cut(s) 22, 356
BmeRI GACNNNNNGTC 1 cut(s) 235
BmgT120I GGNCC 2 cut(s) 649, 1069
BmiI GGNNCC 2 cut(s) 111, 150
BmrFI CCNGG 2 cut(s) 22, 356
BmsI GCATC 6 cut(s) 336, 370, 441, 721, 841, 1065
BmtI GCTAGC 1 cut(s) 228
BpiI GAAGAC 1 cut(s) 1019
BpmI CTGGAG 1 cut(s) 1322
Bpu10I CCTNAGC 1 cut(s) 199
BsaBI GATNNNNATC 1 cut(s) 861
BsaHI GRCGYC 1 cut(s) 149
BsaI GGTCTC 1 cut(s) 410
BsaJI CCNNGG 3 cut(s) 21, 152, 1395
BsaWI WCCGGW 1 cut(s) 98
Bsc4I CCNNNNNNNGG 4 cut(s) 49, 98, 105, 616
Bse118I RCCGGY 1 cut(s) 98
Bse8I GATNNNNATC 1 cut(s) 861
BseBI CCWGG 2 cut(s) 22, 356
BseDI CCNNGG 3 cut(s) 21, 152, 1395
BseGI GGATG 3 cut(s) 192, 327, 1351
BseJI GATNNNNATC 1 cut(s) 861
BseLI CCNNNNNNNGG 4 cut(s) 49, 98, 105, 616
BseMII CTCAG 4 cut(s) 269, 523, 556, 663
BseRI GAGGAG 6 cut(s) 275, 497, 641, 1040, 1283, 1463
BseXI GCAGC 7 cut(s) 400, 630, 643, 1342, 1424, 1427, 1485
BseYI CCCAGC 1 cut(s) 215
Bsh1285I CGRYCG 1 cut(s) 99
BshFI GGCC 4 cut(s) 84, 651, 768, 1070
BshNI GGYRCC 1 cut(s) 148
BshTI ACCGGT 1 cut(s) 98
BsiEI CGRYCG 1 cut(s) 99
BsiHKAI GWGCWC 1 cut(s) 279
BsiSI CCGG 2 cut(s) 99, 113
BslI CCNNNNNNNGG 4 cut(s) 49, 98, 105, 616
BsmAI GTCTC 6 cut(s) 8, 126, 410, 569, 880, 1179
BsmBI CGTCTC 1 cut(s) 569
BsmI GAATGC 1 cut(s) 673
BsnI GGCC 4 cut(s) 84, 651, 768, 1070
Bso31I GGTCTC 1 cut(s) 410
Bsp1286I GDGCHC 1 cut(s) 279
Bsp1407I TGTACA 1 cut(s) 910
Bsp143I GATC 7 cut(s) 163, 258, 502, 862, 1255, 1420, 1452
BspACI CCGC 5 cut(s) 50, 53, 157, 325, 680
BspANI GGCC 4 cut(s) 84, 651, 768, 1070
BspCNI CTCAG 4 cut(s) 268, 522, 555, 664
BspHI TCATGA 1 cut(s) 412
BspLI GGNNCC 2 cut(s) 111, 150
BspMAI CTGCAG 4 cut(s) 648, 933, 1360, 1414
BspOI GCTAGC 1 cut(s) 228
BspT107I GGYRCC 1 cut(s) 148
BspTI CTTAAG 1 cut(s) 803
BspTNI GGTCTC 1 cut(s) 410
BsrFI RCCGGY 1 cut(s) 98
BsrGI TGTACA 1 cut(s) 910
BssAI RCCGGY 1 cut(s) 98
BssECI CCNNGG 3 cut(s) 21, 152, 1395
BssMI GATC 7 cut(s) 163, 258, 502, 862, 1255, 1420, 1452
BssNI GRCGYC 1 cut(s) 149
BssT1I CCWWGG 1 cut(s) 152
Bst2UI CCWGG 2 cut(s) 22, 356
Bst4CI ACNGT 2 cut(s) 663, 915
Bst6I CTCTTC 4 cut(s) 720, 815, 939, 1182
BstACI GRCGYC 1 cut(s) 149
BstAFI CTTAAG 1 cut(s) 803
BstAPI GCANNNNNTGC 2 cut(s) 640, 1391
BstAUI TGTACA 1 cut(s) 910
BstC8I GCNNGC 4 cut(s) 222, 226, 1117, 1428
BstDEI CTNAG 6 cut(s) 199, 255, 469, 509, 542, 672
BstF5I GGATG 3 cut(s) 192, 327, 1351
BstH2I RGCGCY 1 cut(s) 152
BstHHI GCGC 2 cut(s) 151, 753
BstKTI GATC 7 cut(s) 166, 261, 505, 865, 1258, 1423, 1455
BstMAI GTCTC 6 cut(s) 8, 126, 410, 569, 880, 1179
BstMBI GATC 7 cut(s) 163, 258, 502, 862, 1255, 1420, 1452
BstMCI CGRYCG 1 cut(s) 99
BstMWI GCNNNNNNNGC 7 cut(s) 157, 221, 640, 677, 1112, 1361, 1391
BstNI CCWGG 2 cut(s) 22, 356
BstSCI CCNGG 2 cut(s) 20, 354
BstSFI CTRYAG 5 cut(s) 644, 929, 939, 1356, 1410
BstV1I GCAGC 7 cut(s) 400, 630, 643, 1342, 1424, 1427, 1485
BstV2I GAAGAC 1 cut(s) 1019
BstX2I RGATCY 2 cut(s) 502, 1255
BstXI CCANNNNNNTGG 1 cut(s) 362
BstYI RGATCY 2 cut(s) 502, 1255
BsuRI GGCC 4 cut(s) 84, 651, 768, 1070
BtgZI GCGATG 1 cut(s) 319
BtsCI GGATG 3 cut(s) 192, 327, 1351
BtsIMutI CAGTG 1 cut(s) 550
Cac8I GCNNGC 4 cut(s) 222, 226, 1117, 1428
CciI TCATGA 1 cut(s) 412
CfoI GCGC 2 cut(s) 151, 753
Cfr10I RCCGGY 1 cut(s) 98
Cfr13I GGNCC 2 cut(s) 649, 1069
CseI GACGC 1 cut(s) 260
Csp6I GTAC 1 cut(s) 911
CspAI ACCGGT 1 cut(s) 98
CviAII CATG 3 cut(s) 262, 413, 994
CviQI GTAC 1 cut(s) 911
DdeI CTNAG 6 cut(s) 199, 255, 469, 509, 542, 672
DinI GGCGCC 1 cut(s) 150
DpnI GATC 7 cut(s) 165, 260, 504, 864, 1257, 1422, 1454
DpnII GATC 7 cut(s) 163, 258, 502, 862, 1255, 1420, 1452
DriI GACNNNNNGTC 1 cut(s) 235
EaeI YGGCCR 1 cut(s) 82
Eam1104I CTCTTC 4 cut(s) 720, 815, 939, 1182
Eam1105I GACNNNNNGTC 1 cut(s) 235
EarI CTCTTC 4 cut(s) 720, 815, 939, 1182
Eco130I CCWWGG 1 cut(s) 152
Eco147I AGGCCT 1 cut(s) 768
Eco31I GGTCTC 1 cut(s) 410
Eco57I CTGAAG 1 cut(s) 1163
EcoRII CCWGG 2 cut(s) 20, 354
EcoT14I CCWWGG 1 cut(s) 152
EgeI GGCGCC 1 cut(s) 150
EheI GGCGCC 1 cut(s) 150
ErhI CCWWGG 1 cut(s) 152
Esp3I CGTCTC 1 cut(s) 569
FaeI CATG 3 cut(s) 265, 416, 997
FatI CATG 3 cut(s) 261, 412, 993
FauI CCCGC 2 cut(s) 332, 673
FokI GGATG 3 cut(s) 199, 314, 1358
FspBI CTAG 4 cut(s) 57, 153, 225, 1241
GlaI GCGC 2 cut(s) 150, 752
GsaI CCCAGC 1 cut(s) 219
GsuI CTGGAG 1 cut(s) 1322
HaeII RGCGCY 1 cut(s) 152
HaeIII GGCC 4 cut(s) 84, 651, 768, 1070
HapII CCGG 2 cut(s) 99, 113
HgaI GACGC 1 cut(s) 260
HhaI GCGC 2 cut(s) 151, 753
Hin1I GRCGYC 1 cut(s) 149
Hin1II CATG 3 cut(s) 265, 416, 997
Hin6I GCGC 2 cut(s) 149, 751
HinP1I GCGC 2 cut(s) 149, 751
HincII GTYRAC 1 cut(s) 615
HindII GTYRAC 1 cut(s) 615
HinfI GANTC 8 cut(s) 67, 88, 400, 450, 586, 878, 1310, 1373
HpaI GTTAAC 1 cut(s) 615
HpaII CCGG 2 cut(s) 99, 113
HphI GGTGA 5 cut(s) 113, 484, 586, 595, 909
Hpy166II GTNNAC 1 cut(s) 615
Hpy188I TCNGA 8 cut(s) 93, 258, 274, 512, 794, 850, 883, 1182
Hpy188III TCNNGA 9 cut(s) 244, 341, 404, 413, 722, 903, 962, 1165, 1328
Hpy8I GTNNAC 1 cut(s) 615
Hpy99I CGWCG 2 cut(s) 97, 311
HpyAV CCTTC 5 cut(s) 574, 758, 808, 961, 1033
HpyCH4III ACNGT 2 cut(s) 663, 915
HpyCH4IV ACGT 1 cut(s) 898
HpyF10VI GCNNNNNNNGC 7 cut(s) 157, 221, 640, 677, 1112, 1361, 1391
HpyF3I CTNAG 6 cut(s) 199, 255, 469, 509, 542, 672
HpySE526I ACGT 1 cut(s) 898
Hsp92I GRCGYC 1 cut(s) 149
Hsp92II CATG 3 cut(s) 265, 416, 997
HspAI GCGC 2 cut(s) 149, 751
KasI GGCGCC 1 cut(s) 148
KspAI GTTAAC 1 cut(s) 615
Kzo9I GATC 7 cut(s) 163, 258, 502, 862, 1255, 1420, 1452
LmnI GCTCC 2 cut(s) 274, 628
Lsp1109I GCAGC 7 cut(s) 400, 630, 643, 1342, 1424, 1427, 1485
LweI GCATC 6 cut(s) 336, 370, 441, 721, 841, 1065
MaeI CTAG 4 cut(s) 57, 153, 225, 1241
MaeII ACGT 1 cut(s) 898
MaeIII GTNAC 3 cut(s) 59, 101, 915
MalI GATC 7 cut(s) 165, 260, 504, 864, 1257, 1422, 1454
MboI GATC 7 cut(s) 163, 258, 502, 862, 1255, 1420, 1452
MboII GAAGA 8 cut(s) 340, 707, 710, 832, 956, 961, 1024, 1169
MfeI CAATTG 2 cut(s) 638, 1485
MflI RGATCY 2 cut(s) 502, 1255
MhlI GDGCHC 1 cut(s) 279
MlsI TGGCCA 1 cut(s) 84
MluNI TGGCCA 1 cut(s) 84
Mly113I GGCGCC 1 cut(s) 149
MmeI TCCRAC 2 cut(s) 116, 171
Mox20I TGGCCA 1 cut(s) 84
MscI TGGCCA 1 cut(s) 84
MseI TTAA 8 cut(s) 614, 771, 786, 804, 1005, 1136, 1170, 1458
MslI CAYNNNNRTG 2 cut(s) 1443, 1473
Msp20I TGGCCA 1 cut(s) 84
MspCI CTTAAG 1 cut(s) 803
MspI CCGG 2 cut(s) 99, 113
MspR9I CCNGG 2 cut(s) 22, 356
MunI CAATTG 2 cut(s) 638, 1485
Mva1269I GAATGC 1 cut(s) 673
MvaI CCWGG 2 cut(s) 22, 356
MwoI GCNNNNNNNGC 7 cut(s) 157, 221, 640, 677, 1112, 1361, 1391
NarI GGCGCC 1 cut(s) 149
NdeII GATC 7 cut(s) 163, 258, 502, 862, 1255, 1420, 1452
NheI GCTAGC 1 cut(s) 224
NlaIII CATG 3 cut(s) 265, 416, 997
NlaIV GGNNCC 2 cut(s) 111, 150
NmuCI GTSAC 3 cut(s) 59, 101, 915
PagI TCATGA 1 cut(s) 412
PceI AGGCCT 1 cut(s) 768
PcsI WCGNNNNNNNCGW 1 cut(s) 471
PctI GAATGC 1 cut(s) 673
PfeI GAWTC 8 cut(s) 67, 88, 400, 450, 586, 878, 1310, 1373
PinAI ACCGGT 1 cut(s) 98
PluTI GGCGCC 1 cut(s) 152
Psp6I CCWGG 2 cut(s) 20, 354
PspFI CCCAGC 1 cut(s) 215
PspGI CCWGG 2 cut(s) 20, 354
PspN4I GGNNCC 2 cut(s) 111, 150
PspPI GGNCC 2 cut(s) 649, 1069
PstI CTGCAG 4 cut(s) 648, 933, 1360, 1414
PsuI RGATCY 2 cut(s) 502, 1255
RsaI GTAC 1 cut(s) 912
RsaNI GTAC 1 cut(s) 911
RseI CAYNNNNRTG 2 cut(s) 1443, 1473
SaqAI TTAA 8 cut(s) 614, 771, 786, 804, 1005, 1136, 1170, 1458
Sau3AI GATC 7 cut(s) 163, 258, 502, 862, 1255, 1420, 1452
Sau96I GGNCC 2 cut(s) 649, 1069
ScrFI CCNGG 2 cut(s) 22, 356
SduI GDGCHC 1 cut(s) 279
SfaNI GCATC 6 cut(s) 336, 370, 441, 721, 841, 1065
SfcI CTRYAG 5 cut(s) 644, 929, 939, 1356, 1410
SfoI GGCGCC 1 cut(s) 150
SmiMI CAYNNNNRTG 2 cut(s) 1443, 1473
SmlI CTYRAG 1 cut(s) 803
SmoI CTYRAG 1 cut(s) 803
SseBI AGGCCT 1 cut(s) 768
SsiI CCGC 5 cut(s) 50, 53, 157, 325, 680
SspDI GGCGCC 1 cut(s) 148
SspMI CTAG 4 cut(s) 57, 153, 225, 1241
StuI AGGCCT 1 cut(s) 768
StyD4I CCNGG 2 cut(s) 20, 354
StyI CCWWGG 1 cut(s) 152
TaaI ACNGT 2 cut(s) 663, 915
TaiI ACGT 1 cut(s) 901
TaqI TCGA 4 cut(s) 178, 342, 378, 474
TatI WGTACW 1 cut(s) 910
TauI GCSGC 3 cut(s) 53, 56, 160
TfiI GAWTC 8 cut(s) 67, 88, 400, 450, 586, 878, 1310, 1373
Tru1I TTAA 8 cut(s) 614, 771, 786, 804, 1005, 1136, 1170, 1458
Tru9I TTAA 8 cut(s) 614, 771, 786, 804, 1005, 1136, 1170, 1458
TscAI CASTG 1 cut(s) 550
TseFI GTSAC 3 cut(s) 59, 101, 915
TseI GCWGC 7 cut(s) 388, 631, 643, 1355, 1412, 1415, 1498
Tsp45I GTSAC 3 cut(s) 59, 101, 915
TspDTI ATGAA 5 cut(s) 401, 620, 705, 996, 1173
TspGWI ACGGA 1 cut(s) 632
TspRI CASTG 1 cut(s) 550
Vha464I CTTAAG 1 cut(s) 803
XapI RAATTY 1 cut(s) 1109
XmaJI CCTAGG 1 cut(s) 152
XspI CTAG 4 cut(s) 57, 153, 225, 1241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.