Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0002625

Physical Location & Seq

Genomic Coordinates Reverse (-)

20069375 .. 20070344

Gene Structure 970 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g20190.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGCAGGCTATACAGGAACAGGTCAATTCTGCTAAATCAGTCGACAGAGACGTTAAAGCTGTAAAAGCTAAACTAAGTGATGATGGAGTTGTAAGCAAGTCTCTTCAGGCCAAACTGGTTGAACGGGAGGGAAAAGTGGAACAGTTGAATGAATTAAAAAAGCAGCTAGAAAGAGAGAGAGATGTAAAGTTTGAGGAGGCTTCTAAAGATTTGAATAATGTGGAGCTGGAGGTGGAATCTAGGAGGCGTGATCTAGAAGCAAGGCAAAAAGCTGTTGAAGCTGCAGTGGAAGAGGTGGATTCTATCACTTCAAAGACAGCATCGATAAAAGAAGCTGGAGCAACTGATCAGAAAGAATTAGCTCGTAAATGTGAGGAGATCATGAAAGAGTTCCACCAGTACCAGAACTCAATTAGGGTCCTGCTGCTGGGGAGCCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000070 GO:0000228 GO:0000278 GO:0000280 GO:0000775 GO:0000776 GO:0000777 GO:0000778 GO:0000779 GO:0000780 GO:0000793 GO:0000794 GO:0000819 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005773 GO:0005774 GO:0005815 GO:0005816 GO:0005856 GO:0005886 GO:0006996 GO:0007049 GO:0007059 GO:0007080 GO:0007127 GO:0008150 GO:0008608 GO:0009987 GO:0015630 GO:0016020 GO:0016043 GO:0022402 GO:0022414 GO:0031090 GO:0031262 GO:0031617 GO:0031974 GO:0031981 GO:0032991 GO:0035974 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044437 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0048285 GO:0050000 GO:0051179 GO:0051234 GO:0051276 GO:0051303 GO:0051310 GO:0051315 GO:0051316 GO:0051321 GO:0051455 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0061982 GO:0070013 GO:0071840 GO:0071944 GO:0098588 GO:0098687 GO:0098805 GO:0098813 GO:0140013 GO:0140014 GO:1903046 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nuf2

Protein Analysis

147

Amino Acids

16.54

Weight (kDa)

5.45

Isoelectric Point (pI)

31.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61000
fragaria_vesca	FvH4_6g25020 FvH4_6g25020 FvH4_6g25020 FvH4_6g25020 FvH4_6g25020 FvH4_6g25020 FvH4_7g06682 FvH4_7g06682 FvH4_7g06682 FvH4_7g06682 FvH4_7g06682
malus_domestica	MD08G1232500.v1.1 MD08G1233000.v1.1 MD15G1425300.v1.1
prunus_persica	Prupe.1G570900_v2.0.a1 Prupe.1G570900_v2.0.a1
pyrus_communis	pycom08g20190 pycom15g37700
rosa_chinensis	RchiOBHm_Chr1g0336301 RchiOBHm_Chr7g0222021
rosa_laevigata	RLG00000002102 RLG00000029374
rosa_multiflora	Rmu_co8043290.1_g000001 Rmu_sc0001453.1_g000009 Rmu_sc0004325.1_g000003
rosa_roxburghii	Rroxscaffold_3G00237490 Rroxscaffold_4G00315800
rosa_rugosa	Rorug01G0123600 Rorug07G0205100
rosa_samantha	Rh1AG144300 Rh1BG113700 Rh1CG135800 Rh1DG150800 Rh7AG345600 Rh7BG336200 Rh7CG363300 Rh7DG343900
rosa_wichuraiana	Rw0G015220 Rw7G029310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	42
AcuI	CTGAAG	1 cut(s)	89
AfaI	GTAC	1 cut(s)	401
AfiI	CCNNNNNNNGG	1 cut(s)	427
AgsI	TTSAA	5 cut(s)	122, 148, 214, 278, 312
AluBI	AGCT	8 cut(s)	59, 68, 166, 226, 272, 281, 335, 362
AluI	AGCT	8 cut(s)	59, 68, 166, 226, 272, 281, 335, 362
Alw26I	GTCTC	2 cut(s)	42, 105
AoxI	GGCC	1 cut(s)	108
ApeKI	GCWGC	3 cut(s)	163, 281, 424
Asp700I	GAANNNNTTC	1 cut(s)	389
AspS9I	GGNCC	1 cut(s)	418
AvaII	GGWCC	1 cut(s)	418
BbvI	GCAGC	3 cut(s)	175, 268, 411
BccI	CCATC	1 cut(s)	77
BclI	TGATCA	1 cut(s)	346
BcoDI	GTCTC	2 cut(s)	42, 105
BfaI	CTAG	3 cut(s)	167, 240, 254
BfmI	CTRYAG	1 cut(s)	282
BisI	GCNGC	3 cut(s)	164, 282, 425
BlsI	GCNGC	3 cut(s)	165, 283, 426
Bme18I	GGWCC	1 cut(s)	418
BmgT120I	GGNCC	1 cut(s)	418
BmiI	GGNNCC	2 cut(s)	419, 434
BmsI	GCATC	1 cut(s)	329
BpmI	CTGGAG	2 cut(s)	248, 357
Bsa29I	ATCGAT	1 cut(s)	323
Bsc4I	CCNNNNNNNGG	1 cut(s)	427
Bse1I	ACTGG	2 cut(s)	120, 397
BseCI	ATCGAT	1 cut(s)	323
BseLI	CCNNNNNNNGG	1 cut(s)	427
BseNI	ACTGG	2 cut(s)	120, 397
BseRI	GAGGAG	2 cut(s)	209, 389
BseXI	GCAGC	3 cut(s)	175, 268, 411
BseYI	CCCAGC	1 cut(s)	427
BshFI	GGCC	1 cut(s)	110
BshVI	ATCGAT	1 cut(s)	323
BslI	CCNNNNNNNGG	1 cut(s)	427
BsmAI	GTCTC	2 cut(s)	42, 105
BsmBI	CGTCTC	1 cut(s)	42
BsnI	GGCC	1 cut(s)	110
Bsp143I	GATC	3 cut(s)	250, 346, 378
BspANI	GGCC	1 cut(s)	110
BspDI	ATCGAT	1 cut(s)	323
BspHI	TCATGA	1 cut(s)	381
BspLI	GGNNCC	2 cut(s)	419, 434
BspMAI	CTGCAG	1 cut(s)	286
BsrI	ACTGG	2 cut(s)	120, 397
BssMI	GATC	3 cut(s)	250, 346, 378
Bst4CI	ACNGT	1 cut(s)	144
Bst6I	CTCTTC	2 cut(s)	108, 285
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	1 cut(s)	74
BstKTI	GATC	3 cut(s)	253, 349, 381
BstMAI	GTCTC	2 cut(s)	42, 105
BstMBI	GATC	3 cut(s)	250, 346, 378
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 278
BstSFI	CTRYAG	1 cut(s)	282
BstV1I	GCAGC	3 cut(s)	175, 268, 411
Bsu15I	ATCGAT	1 cut(s)	323
BsuRI	GGCC	1 cut(s)	110
BsuTUI	ATCGAT	1 cut(s)	323
BtsI	GCAGTG	1 cut(s)	291
BtsIMutI	CAGTG	1 cut(s)	291
Cac8I	GCNNGC	1 cut(s)	6
CciI	TCATGA	1 cut(s)	381
Cfr13I	GGNCC	1 cut(s)	418
ClaI	ATCGAT	1 cut(s)	323
Csp6I	GTAC	1 cut(s)	400
CviAII	CATG	1 cut(s)	382
CviQI	GTAC	1 cut(s)	400
DdeI	CTNAG	1 cut(s)	74
DpnI	GATC	3 cut(s)	252, 348, 380
DpnII	GATC	3 cut(s)	250, 346, 378
Eam1104I	CTCTTC	2 cut(s)	108, 285
EarI	CTCTTC	2 cut(s)	108, 285
Eco47I	GGWCC	1 cut(s)	418
Eco57I	CTGAAG	1 cut(s)	89
EcoO109I	RGGNCCY	1 cut(s)	418
Esp3I	CGTCTC	1 cut(s)	42
FaeI	CATG	1 cut(s)	385
FaiI	YATR	2 cut(s)	11, 383
FatI	CATG	1 cut(s)	381
FbaI	TGATCA	1 cut(s)	346
FblI	GTMKAC	1 cut(s)	42
Fnu4HI	GCNGC	3 cut(s)	164, 282, 425
Fsp4HI	GCNGC	3 cut(s)	164, 282, 425
FspBI	CTAG	3 cut(s)	167, 240, 254
GluI	GCNGC	3 cut(s)	164, 282, 425
GsaI	CCCAGC	1 cut(s)	431
GsuI	CTGGAG	2 cut(s)	248, 357
HaeIII	GGCC	1 cut(s)	110
Hin1II	CATG	1 cut(s)	385
HincII	GTYRAC	1 cut(s)	43
HindII	GTYRAC	1 cut(s)	43
HinfI	GANTC	2 cut(s)	236, 299
Hpy166II	GTNNAC	1 cut(s)	43
Hpy188I	TCNGA	1 cut(s)	351
Hpy188III	TCNNGA	2 cut(s)	254, 382
Hpy8I	GTNNAC	1 cut(s)	43
HpyCH4III	ACNGT	1 cut(s)	144
HpyCH4IV	ACGT	1 cut(s)	51
HpyCH4V	TGCA	2 cut(s)	4, 284
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 278
HpyF3I	CTNAG	1 cut(s)	74
HpySE526I	ACGT	1 cut(s)	51
Hsp92II	CATG	1 cut(s)	385
Ksp22I	TGATCA	1 cut(s)	346
Kzo9I	GATC	3 cut(s)	250, 346, 378
LmnI	GCTCC	3 cut(s)	223, 338, 432
LpnPI	CCDG	9 cut(s)	5, 92, 101, 212, 321, 410, 413, 416, 434
Lsp1109I	GCAGC	3 cut(s)	175, 268, 411
LweI	GCATC	1 cut(s)	329
MaeI	CTAG	3 cut(s)	167, 240, 254
MaeII	ACGT	1 cut(s)	51
MalI	GATC	3 cut(s)	252, 348, 380
MboI	GATC	3 cut(s)	250, 346, 378
MboII	GAAGA	2 cut(s)	95, 302
MluCI	AATT	4 cut(s)	25, 152, 356, 411
MnlI	CCTC	7 cut(s)	121, 187, 190, 223, 237, 286, 367
MroXI	GAANNNNTTC	1 cut(s)	389
MseI	TTAA	2 cut(s)	54, 155
MwoI	GCNNNNNNNGC	2 cut(s)	65, 278
NdeII	GATC	3 cut(s)	250, 346, 378
NlaIII	CATG	1 cut(s)	385
NlaIV	GGNNCC	2 cut(s)	419, 434
PagI	TCATGA	1 cut(s)	381
PcsI	WCGNNNNNNNCGW	1 cut(s)	48
PdmI	GAANNNNTTC	1 cut(s)	389
PfeI	GAWTC	2 cut(s)	236, 299
PkrI	GCNGC	3 cut(s)	165, 283, 426
PpuMI	RGGWCCY	1 cut(s)	418
Psp5II	RGGWCCY	1 cut(s)	418
PspFI	CCCAGC	1 cut(s)	427
PspN4I	GGNNCC	2 cut(s)	419, 434
PspPI	GGNCC	1 cut(s)	418
PspPPI	RGGWCCY	1 cut(s)	418
PstI	CTGCAG	1 cut(s)	286
RsaI	GTAC	1 cut(s)	401
RsaNI	GTAC	1 cut(s)	400
SalI	GTCGAC	1 cut(s)	41
SaqAI	TTAA	2 cut(s)	54, 155
SatI	GCNGC	3 cut(s)	164, 282, 425
Sau3AI	GATC	3 cut(s)	250, 346, 378
Sau96I	GGNCC	1 cut(s)	418
SfaNI	GCATC	1 cut(s)	329
SfcI	CTRYAG	1 cut(s)	282
SinI	GGWCC	1 cut(s)	418
Sse9I	AATT	4 cut(s)	25, 152, 356, 411
SspMI	CTAG	3 cut(s)	167, 240, 254
TaaI	ACNGT	1 cut(s)	144
TaiI	ACGT	1 cut(s)	54
TaqI	TCGA	2 cut(s)	42, 323
TasI	AATT	4 cut(s)	25, 152, 356, 411
TfiI	GAWTC	2 cut(s)	236, 299
Tru1I	TTAA	2 cut(s)	54, 155
Tru9I	TTAA	2 cut(s)	54, 155
TscAI	CASTG	1 cut(s)	291
TseI	GCWGC	3 cut(s)	163, 281, 424
TspDTI	ATGAA	2 cut(s)	165, 398
TspRI	CASTG	1 cut(s)	291
VpaK11BI	GGWCC	1 cut(s)	418
XbaI	TCTAGA	1 cut(s)	253
XmiI	GTMKAC	1 cut(s)	42
XmnI	GAANNNNTTC	1 cut(s)	389
XspI	CTAG	3 cut(s)	167, 240, 254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.