Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0002625

Physical Location & Seq

Genomic Coordinates Reverse (-)

37380894 .. 37386937

Gene Structure 6044 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029374

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

ATGTCGAAGCTGGTATACCCAAAGCTCAGTCGCACCGAGATCGTCACAATCCTCGTCGAGGCTCAGATAATCGCTATTTCGGAGCAGGATCTTCTCAACCCGAACCCGGATCTCATCGCCGACCTCTACACACGGATCCTCACCACCTTCGACTTCCTCCCCGAGGAAGATGAGCAAGTTGATTTTGATGCCTTGGAGCTGCTCGAGAATCCGGATTTTCACGACAAGTCGGCCCAGAGCATCAAGCTGTACAACACACTGAAGCAAGTGGTGGCCTTATTGGATTGCCCTAAGAAATTTATCTACGCAGATCTCATAAGACCCGACCCGAATCGGACTGAGGTTTTTCTGAGTGCCCTTCTCAATTACCATGTATATAGTGATAAACCAAAACTACAGTGTGTTTTAGTGAGTGATGAAAGATCTAAAGAGAAAGATGAAAGAAATTTCATTGCTACGTATTCCTTGATCTTGTGGAATGCTGAGATTGCACACTACAACGAAACAAGAGAAAAGGAGTTACCTCTTGTTCAGGAGGTAGATTCCAAAGTCAAAGAATTGCGCCAAACCATATCAGACCTTAACCTTGATCAAGTGCAACTGAGAACTTCTATTAGGAAGTTAAAGGAGAAGGCTGCTGAAATGGATAAAGAGATGTCTGATGCTGATTTCGATCTGCTAAAGAGTGATTCGGAAAGACAAGAGTTACGTTCTAAAATTGTTCATTCACCAGATAAACTGCAGAGAGCTTTAGCAGAGAAGAAATTAATTAGAGAGAAGGCTACGAGTGATGAAATGTTAGCCATGCAATCTTTTAAGGAGAAGACTGCTGTTGATGAGGTGTATGCGAAGGTTTCCAAGAAATTGTTAAAGCACTCGGCCCAGATGCATGCTATTCAAGAACAGGTCAATTCTGCTAAATCTACTAGTAAAGACTACAGGGCTGTAAAAGATAAAATAAGTGATGATGAAGTCCTAAGCAAGGTTCTTCAGGAGGAACTAGTGAAACAGCAATCAAAAGTGAAAGAATTGAATGATTTCAAAAAGAAGTTAGAAAAAGAACGATATCTCAAGTTTGAGGAGGCTAGTAAAGAACTGAGTAATGTGAAGCTGGAGGTGGAATCTAGGAGGTATGTTCTGGAAGCAAGGCAAAAGAATGTTGAAGCTGCAATAGCAGAGGTGGAAACTATAACTGCAAAGACTGCATCAGTAAGAAAATCTGGAGCAGCTGATCAGCAACAATTAGCTCATCGAAGTGAGGAGATCTCTAAAGAGTTCCACCAATACTTATATTCAATTGGGGTCTTGCTCCAATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000070 GO:0000228 GO:0000278 GO:0000280 GO:0000775 GO:0000776 GO:0000777 GO:0000778 GO:0000779 GO:0000780 GO:0000793 GO:0000794 GO:0000819 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005773 GO:0005774 GO:0005815 GO:0005816 GO:0005856 GO:0005886 GO:0006996 GO:0007049 GO:0007059 GO:0007080 GO:0007127 GO:0008150 GO:0008608 GO:0009987 GO:0015630 GO:0016020 GO:0016043 GO:0022402 GO:0022414 GO:0031090 GO:0031262 GO:0031617 GO:0031974 GO:0031981 GO:0032991 GO:0035974 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044437 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0048285 GO:0050000 GO:0051179 GO:0051234 GO:0051276 GO:0051303 GO:0051310 GO:0051315 GO:0051316 GO:0051321 GO:0051455 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0061982 GO:0070013 GO:0071840 GO:0071944 GO:0098588 GO:0098687 GO:0098805 GO:0098813 GO:0140013 GO:0140014 GO:1903046 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nuf2

Protein Analysis

440

Amino Acids

50.69

Weight (kDa)

5.65

Isoelectric Point (pI)

35.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nuf2	PF03800	5 - 128	1.4e-23	Nuf2 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61000
fragaria_vesca	FvH4_6g25020 FvH4_6g25020 FvH4_6g25020 FvH4_6g25020 FvH4_6g25020 FvH4_6g25020 FvH4_7g06682 FvH4_7g06682 FvH4_7g06682 FvH4_7g06682 FvH4_7g06682
malus_domestica	MD08G1232500.v1.1 MD08G1233000.v1.1 MD15G1425300.v1.1
prunus_persica	Prupe.1G570900_v2.0.a1 Prupe.1G570900_v2.0.a1
pyrus_communis	pycom08g20190 pycom15g37700
rosa_chinensis	RchiOBHm_Chr1g0336301 RchiOBHm_Chr7g0222021
rosa_laevigata	RLG00000002102 RLG00000029374
rosa_multiflora	Rmu_co8043290.1_g000001 Rmu_sc0001453.1_g000009 Rmu_sc0004325.1_g000003
rosa_roxburghii	Rroxscaffold_3G00237490 Rroxscaffold_4G00315800
rosa_rugosa	Rorug01G0123600 Rorug07G0205100
rosa_samantha	Rh1AG144300 Rh1BG113700 Rh1CG135800 Rh1DG150800 Rh7AG345600 Rh7BG336200 Rh7CG363300 Rh7DG343900
rosa_wichuraiana	Rw0G015220 Rw7G029310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	15
AccIII	TCCGGA	1 cut(s)	211
AclWI	GGATC	4 cut(s)	96, 117, 130, 143
AcsI	RAATTY	2 cut(s)	296, 445
AcuI	CTGAAG	2 cut(s)	281, 974
AfaI	GTAC	1 cut(s)	251
AfiI	CCNNNNNNNGG	4 cut(s)	58, 106, 163, 982
AgsI	TTSAA	5 cut(s)	899, 1033, 1042, 1163, 1296
AhlI	ACTAGT	2 cut(s)	926, 1000
AluBI	AGCT	9 cut(s)	10, 25, 199, 247, 749, 1111, 1166, 1229, 1247
AluI	AGCT	9 cut(s)	10, 25, 199, 247, 749, 1111, 1166, 1229, 1247
AlwI	GGATC	4 cut(s)	96, 117, 130, 143
Ama87I	CYCGRG	2 cut(s)	161, 203
Aor13HI	TCCGGA	1 cut(s)	211
AoxI	GGCC	3 cut(s)	231, 273, 879
ApeKI	GCWGC	4 cut(s)	199, 635, 1166, 1226
ApoI	RAATTY	2 cut(s)	296, 445
AseI	ATTAAT	1 cut(s)	767
Asp700I	GAANNNNTTC	1 cut(s)	1037
AspLEI	GCGC	1 cut(s)	564
AspS9I	GGNCC	2 cut(s)	232, 880
AsuC2I	CCSGG	1 cut(s)	107
AsuHPI	GGTGA	2 cut(s)	133, 720
AvaI	CYCGRG	2 cut(s)	161, 203
BaeGI	GKGCMC	1 cut(s)	358
BamHI	GGATCC	1 cut(s)	135
BarI	GAAGNNNNNNTAC	1 cut(s)	31
BbsI	GAAGAC	1 cut(s)	830
BbvI	GCAGC	4 cut(s)	186, 622, 1153, 1238
BcgI	CGANNNNNNTGC	2 cut(s)	22, 56
BclI	TGATCA	2 cut(s)	589, 1231
BcnI	CCSGG	1 cut(s)	107
BcuI	ACTAGT	2 cut(s)	926, 1000
BfaI	CTAG	4 cut(s)	927, 1001, 1086, 1125
BfmI	CTRYAG	3 cut(s)	395, 740, 937
BglII	AGATCT	3 cut(s)	310, 422, 1263
BisI	GCNGC	4 cut(s)	200, 636, 1167, 1227
BlsI	GCNGC	4 cut(s)	201, 637, 1168, 1228
Bme1390I	CCNGG	1 cut(s)	107
BmeT110I	CYCGRG	2 cut(s)	161, 203
BmgT120I	GGNCC	2 cut(s)	232, 880
BmiI	GGNNCC	1 cut(s)	137
BmrFI	CCNGG	1 cut(s)	107
BmsI	GCATC	5 cut(s)	178, 249, 652, 876, 1214
BpiI	GAAGAC	1 cut(s)	830
BplI	GAGNNNNNCTC	2 cut(s)	1250, 1282
BpmI	CTGGAG	2 cut(s)	1133, 1242
Bpu10I	CCTNAGC	1 cut(s)	977
BpuEI	CTTGAG	1 cut(s)	1055
BpuMI	CCSGG	1 cut(s)	107
BsaAI	YACGTR	1 cut(s)	459
BsaBI	GATNNNNATC	1 cut(s)	672
BsaJI	CCNNGG	2 cut(s)	162, 192
BsaWI	WCCGGW	1 cut(s)	211
Bsc4I	CCNNNNNNNGG	4 cut(s)	58, 106, 163, 982
Bse3DI	GCAATG	1 cut(s)	450
Bse8I	GATNNNNATC	1 cut(s)	672
BseAI	TCCGGA	1 cut(s)	211
BseDI	CCNNGG	2 cut(s)	162, 192
BseJI	GATNNNNATC	1 cut(s)	672
BseLI	CCNNNNNNNGG	4 cut(s)	58, 106, 163, 982
BseMI	GCAATG	1 cut(s)	450
BseMII	CTCAG	7 cut(s)	40, 77, 330, 341, 474, 593, 1088
BseRI	GAGGAG	2 cut(s)	1094, 1274
BseSI	GKGCMC	1 cut(s)	358
BseXI	GCAGC	4 cut(s)	186, 622, 1153, 1238
BshFI	GGCC	3 cut(s)	233, 275, 881
BsiHKCI	CYCGRG	2 cut(s)	161, 203
BsiSI	CCGG	2 cut(s)	107, 212
BslI	CCNNNNNNNGG	4 cut(s)	58, 106, 163, 982
BsmI	GAATGC	1 cut(s)	484
BsnI	GGCC	3 cut(s)	233, 275, 881
BsoBI	CYCGRG	2 cut(s)	161, 203
Bsp1286I	GDGCHC	1 cut(s)	358
Bsp13I	TCCGGA	1 cut(s)	211
Bsp1407I	TGTACA	1 cut(s)	249
BspANI	GGCC	3 cut(s)	233, 275, 881
BspCNI	CTCAG	7 cut(s)	39, 76, 331, 342, 475, 594, 1089
BspEI	TCCGGA	1 cut(s)	211
BspLI	GGNNCC	1 cut(s)	137
BspMAI	CTGCAG	1 cut(s)	744
BspPI	GGATC	4 cut(s)	96, 117, 130, 143
BsrDI	GCAATG	1 cut(s)	450
BsrGI	TGTACA	1 cut(s)	249
BssECI	CCNNGG	2 cut(s)	162, 192
BssNAI	GTATAC	1 cut(s)	16
BssT1I	CCWWGG	1 cut(s)	192
Bst1107I	GTATAC	1 cut(s)	16
Bst4CI	ACNGT	1 cut(s)	399
BstAPI	GCANNNNNTGC	1 cut(s)	1202
BstAUI	TGTACA	1 cut(s)	249
BstBAI	YACGTR	1 cut(s)	459
BstC8I	GCNNGC	1 cut(s)	891
BstDEI	CTNAG	9 cut(s)	26, 63, 291, 339, 350, 483, 602, 977, 1097
BstENI	CCTNNNNNAGG	3 cut(s)	56, 161, 980
BstHHI	GCGC	1 cut(s)	564
BstMWI	GCNNNNNNNGC	3 cut(s)	488, 1172, 1202
BstNSI	RCATGY	1 cut(s)	893
BstSCI	CCNGG	1 cut(s)	105
BstSFI	CTRYAG	3 cut(s)	395, 740, 937
BstSLI	GKGCMC	1 cut(s)	358
BstSNI	TACGTA	1 cut(s)	459
BstV1I	GCAGC	4 cut(s)	186, 622, 1153, 1238
BstV2I	GAAGAC	1 cut(s)	830
BstX2I	RGATCY	6 cut(s)	88, 109, 135, 310, 422, 1263
BstYI	RGATCY	6 cut(s)	88, 109, 135, 310, 422, 1263
BstZ17I	GTATAC	1 cut(s)	16
BsuRI	GGCC	3 cut(s)	233, 275, 881
BtgZI	GCGATG	1 cut(s)	100
BtsIMutI	CAGTG	2 cut(s)	257, 404
Cac8I	GCNNGC	1 cut(s)	891
CfoI	GCGC	1 cut(s)	564
Cfr13I	GGNCC	2 cut(s)	232, 880
Csp6I	GTAC	1 cut(s)	250
CviAII	CATG	3 cut(s)	371, 805, 890
CviQI	GTAC	1 cut(s)	250
DdeI	CTNAG	9 cut(s)	26, 63, 291, 339, 350, 483, 602, 977, 1097
Eco105I	TACGTA	1 cut(s)	459
Eco130I	CCWWGG	1 cut(s)	192
Eco32I	GATATC	1 cut(s)	1067
Eco57I	CTGAAG	2 cut(s)	281, 974
Eco88I	CYCGRG	2 cut(s)	161, 203
EcoNI	CCTNNNNNAGG	3 cut(s)	56, 161, 980
EcoRV	GATATC	1 cut(s)	1067
EcoT14I	CCWWGG	1 cut(s)	192
EcoT22I	ATGCAT	1 cut(s)	891
ErhI	CCWWGG	1 cut(s)	192
FaeI	CATG	3 cut(s)	374, 808, 893
FatI	CATG	3 cut(s)	370, 804, 889
FbaI	TGATCA	2 cut(s)	589, 1231
FblI	GTMKAC	1 cut(s)	15
Fnu4HI	GCNGC	4 cut(s)	200, 636, 1167, 1227
Fsp4HI	GCNGC	4 cut(s)	200, 636, 1167, 1227
FspBI	CTAG	4 cut(s)	927, 1001, 1086, 1125
GlaI	GCGC	1 cut(s)	563
GluI	GCNGC	4 cut(s)	200, 636, 1167, 1227
GsuI	CTGGAG	2 cut(s)	1133, 1242
HaeIII	GGCC	3 cut(s)	233, 275, 881
HapII	CCGG	2 cut(s)	107, 212
HhaI	GCGC	1 cut(s)	564
Hin1II	CATG	3 cut(s)	374, 808, 893
Hin6I	GCGC	1 cut(s)	562
HinP1I	GCGC	1 cut(s)	562
HinfI	GANTC	5 cut(s)	208, 331, 542, 689, 1121
HpaII	CCGG	2 cut(s)	107, 212
HphI	GGTGA	2 cut(s)	133, 720
Hpy166II	GTNNAC	1 cut(s)	16
Hpy188I	TCNGA	7 cut(s)	66, 82, 336, 351, 577, 661, 694
Hpy188III	TCNNGA	8 cut(s)	205, 212, 221, 533, 899, 992, 1139, 1221
Hpy8I	GTNNAC	1 cut(s)	16
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	5 cut(s)	157, 368, 625, 772, 844
HpyCH4III	ACNGT	1 cut(s)	399
HpyCH4IV	ACGT	2 cut(s)	458, 709
HpyCH4V	TGCA	8 cut(s)	491, 598, 742, 808, 889, 1169, 1196, 1205
HpyF10VI	GCNNNNNNNGC	3 cut(s)	488, 1172, 1202
HpyF3I	CTNAG	9 cut(s)	26, 63, 291, 339, 350, 483, 602, 977, 1097
HpySE526I	ACGT	2 cut(s)	458, 709
Hsp92II	CATG	3 cut(s)	374, 808, 893
HspAI	GCGC	1 cut(s)	562
Kpn2I	TCCGGA	1 cut(s)	211
Ksp22I	TGATCA	2 cut(s)	589, 1231
LmnI	GCTCC	4 cut(s)	82, 196, 1223, 1314
Lsp1109I	GCAGC	4 cut(s)	186, 622, 1153, 1238
LweI	GCATC	5 cut(s)	178, 249, 652, 876, 1214
MaeI	CTAG	4 cut(s)	927, 1001, 1086, 1125
MaeII	ACGT	2 cut(s)	458, 709
MaeIII	GTNAC	3 cut(s)	43, 519, 705
MboII	GAAGA	5 cut(s)	83, 179, 772, 835, 980
MfeI	CAATTG	1 cut(s)	1296
MflI	RGATCY	6 cut(s)	88, 109, 135, 310, 422, 1263
MhlI	GDGCHC	1 cut(s)	358
Mph1103I	ATGCAT	1 cut(s)	891
MroI	TCCGGA	1 cut(s)	211
MroXI	GAANNNNTTC	1 cut(s)	1037
MseI	TTAA	5 cut(s)	582, 623, 767, 816, 869
MslI	CAYNNNNRTG	1 cut(s)	1254
MspA1I	CMGCKG	1 cut(s)	1229
MspI	CCGG	2 cut(s)	107, 212
MspR9I	CCNGG	1 cut(s)	107
MunI	CAATTG	1 cut(s)	1296
Mva1269I	GAATGC	1 cut(s)	484
MwoI	GCNNNNNNNGC	3 cut(s)	488, 1172, 1202
NciI	CCSGG	1 cut(s)	107
NlaIII	CATG	3 cut(s)	374, 808, 893
NlaIV	GGNNCC	1 cut(s)	137
NmeAIII	GCCGAG	1 cut(s)	857
NmuCI	GTSAC	1 cut(s)	43
NsiI	ATGCAT	1 cut(s)	891
NspI	RCATGY	1 cut(s)	893
PaeI	GCATGC	1 cut(s)	893
PaeR7I	CTCGAG	1 cut(s)	203
PctI	GAATGC	1 cut(s)	484
PdmI	GAANNNNTTC	1 cut(s)	1037
PfeI	GAWTC	5 cut(s)	208, 331, 542, 689, 1121
PkrI	GCNGC	4 cut(s)	201, 637, 1168, 1228
Ppu21I	YACGTR	1 cut(s)	459
PshBI	ATTAAT	1 cut(s)	767
PspN4I	GGNNCC	1 cut(s)	137
PspPI	GGNCC	2 cut(s)	232, 880
PstI	CTGCAG	1 cut(s)	744
PsuI	RGATCY	6 cut(s)	88, 109, 135, 310, 422, 1263
PvuII	CAGCTG	1 cut(s)	1229
RsaI	GTAC	1 cut(s)	251
RsaNI	GTAC	1 cut(s)	250
RseI	CAYNNNNRTG	1 cut(s)	1254
SaqAI	TTAA	5 cut(s)	582, 623, 767, 816, 869
SatI	GCNGC	4 cut(s)	200, 636, 1167, 1227
Sau96I	GGNCC	2 cut(s)	232, 880
ScrFI	CCNGG	1 cut(s)	107
SduI	GDGCHC	1 cut(s)	358
SfaNI	GCATC	5 cut(s)	178, 249, 652, 876, 1214
SfcI	CTRYAG	3 cut(s)	395, 740, 937
Sfr274I	CTCGAG	1 cut(s)	203
SlaI	CTCGAG	1 cut(s)	203
SmiMI	CAYNNNNRTG	1 cut(s)	1254
SmlI	CTYRAG	2 cut(s)	203, 1070
SmoI	CTYRAG	2 cut(s)	203, 1070
SnaBI	TACGTA	1 cut(s)	459
SpeI	ACTAGT	2 cut(s)	926, 1000
SphI	GCATGC	1 cut(s)	893
SspMI	CTAG	4 cut(s)	927, 1001, 1086, 1125
StyD4I	CCNGG	1 cut(s)	105
StyI	CCWWGG	1 cut(s)	192
TaaI	ACNGT	1 cut(s)	399
TaiI	ACGT	2 cut(s)	461, 712
TaqI	TCGA	6 cut(s)	5, 57, 150, 204, 672, 1252
TatI	WGTACW	1 cut(s)	249
TfiI	GAWTC	5 cut(s)	208, 331, 542, 689, 1121
Tru1I	TTAA	5 cut(s)	582, 623, 767, 816, 869
Tru9I	TTAA	5 cut(s)	582, 623, 767, 816, 869
TscAI	CASTG	2 cut(s)	264, 404
TseFI	GTSAC	1 cut(s)	43
TseI	GCWGC	4 cut(s)	199, 635, 1166, 1226
Tsp45I	GTSAC	1 cut(s)	43
TspDTI	ATGAA	6 cut(s)	432, 439, 453, 713, 807, 984
TspGWI	ACGGA	1 cut(s)	148
TspRI	CASTG	2 cut(s)	264, 404
VspI	ATTAAT	1 cut(s)	767
XagI	CCTNNNNNAGG	3 cut(s)	56, 161, 980
XapI	RAATTY	2 cut(s)	296, 445
XceI	RCATGY	1 cut(s)	893
XhoI	CTCGAG	1 cut(s)	203
XmiI	GTMKAC	1 cut(s)	15
XmnI	GAANNNNTTC	1 cut(s)	1037
XspI	CTAG	4 cut(s)	927, 1001, 1086, 1125
Zsp2I	ATGCAT	1 cut(s)	891

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.