Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0002625

Physical Location & Seq

Genomic Coordinates Forward (+)

19368902 .. 19402152

Gene Structure 33251 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG113700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGTCGAAACTGGTATACCCAAAGCTCAGTCGCACCGAGATCGTCACAATCCTCGTCGAGGCTCAGATCATCGCTATTTCCGAGCAGGATCTTCTCAACCCGAACCCGGATCTCATCGCCGACCTCTACACCCGGATCCTCACCACCTTCGACTTCCTCCCCGAGGAAGATGAGCAAGTTGATTTTGATGCCTTGGAGCTGCTCGAGAATCCGGATTTTCACGACAAGTCGGCCCGGAGCATCAAGCTGTACAACACACTGAAGCAATGGAATGCTGAGATTGCACACTACAAAGAAACAAGAGAAAAGGAGTTACCTCTTGTTCCAGAGGTAGATTCCAAAGTCAAAGAATTGCGCCAAACCATATCAGACCTTAACCTTGATCAAGTGCAACTGAGAACTTCTATTAGGAAGTTAAAGGAGAAGGCTGCTGAAATGGATAAAGAGATGTCTGATGCTGATTTTGATCTGCTAAAAAGTGATTCGGAAAGACAAGAGTTTCGTTCAAAAATTGTTCATTCACCAGATAAACTGCAGAGAGCTTTAGCAGAGAAGAAATTAATTAGAGAGAAGGCTACGAGTGATGAAATGTTAGCCATGCAATCTTTGAAGGAGAAAACTGCTGTTGATGAGGTGTATGCAAAGGTTTCCAAGAAATTGTTAAAGCACTTGGCCCAGATGCATGCTATACAAGAACAGGTCAATTCTGCTAAATCTACTAGTAAAGACTACAGGGCTGTAAAAGAAAAAATAAGTGATGATGAAGTCCTAAGCAAGGTTCTTCATGATGAACTAATGAAACAGCAATCAAAAGTTAAAGAATTGAATGATTTCAAAAAGAAGTTAGAAAAAGAACGATATCTCAAGTTTGAGGAGGCTAGTAAAGAACTGAGTAATGTGAAGCTGGAGGTGGAATCTAGGAGGTGTGTGCTGGAAGCAAGGCAAAAGAATGTTGAAGCTGCAATAGCAGAGGTGGAAACTATAACTGCAAAGACTGCATCAGTAAGAACATCTGGAGCAGCTGATCAGCAACAATTAGCTCGTCAAAGTGAGGAGATCACTAAAGAGTGTTTTCCAGCAAAGACAAACGGAGATGAAGTTGATCCGTGTTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000070 GO:0000228 GO:0000278 GO:0000280 GO:0000775 GO:0000776 GO:0000777 GO:0000778 GO:0000779 GO:0000780 GO:0000793 GO:0000794 GO:0000819 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005773 GO:0005774 GO:0005815 GO:0005816 GO:0005856 GO:0005886 GO:0006996 GO:0007049 GO:0007059 GO:0007080 GO:0007127 GO:0008150 GO:0008608 GO:0009987 GO:0015630 GO:0016020 GO:0016043 GO:0022402 GO:0022414 GO:0031090 GO:0031262 GO:0031617 GO:0031974 GO:0031981 GO:0032991 GO:0035974 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044437 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0048285 GO:0050000 GO:0051179 GO:0051234 GO:0051276 GO:0051303 GO:0051310 GO:0051315 GO:0051316 GO:0051321 GO:0051455 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0061982 GO:0070013 GO:0071840 GO:0071944 GO:0098588 GO:0098687 GO:0098805 GO:0098813 GO:0140013 GO:0140014 GO:1903046 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nuf2

Protein Analysis

372

Amino Acids

42.85

Weight (kDa)

5.43

Isoelectric Point (pI)

35.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nuf2	PF03800	5 - 91	1.4e-12	Nuf2 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61000
fragaria_vesca	FvH4_6g25020 FvH4_6g25020 FvH4_6g25020 FvH4_6g25020 FvH4_6g25020 FvH4_6g25020 FvH4_7g06682 FvH4_7g06682 FvH4_7g06682 FvH4_7g06682 FvH4_7g06682
malus_domestica	MD08G1232500.v1.1 MD08G1233000.v1.1 MD15G1425300.v1.1
prunus_persica	Prupe.1G570900_v2.0.a1 Prupe.1G570900_v2.0.a1
pyrus_communis	pycom08g20190 pycom15g37700
rosa_chinensis	RchiOBHm_Chr1g0336301 RchiOBHm_Chr7g0222021
rosa_laevigata	RLG00000002102 RLG00000029374
rosa_multiflora	Rmu_co8043290.1_g000001 Rmu_sc0001453.1_g000009 Rmu_sc0004325.1_g000003
rosa_roxburghii	Rroxscaffold_3G00237490 Rroxscaffold_4G00315800
rosa_rugosa	Rorug01G0123600 Rorug07G0205100
rosa_samantha	Rh1AG144300 Rh1BG113700 Rh1CG135800 Rh1DG150800 Rh7AG345600 Rh7BG336200 Rh7CG363300 Rh7DG343900
rosa_wichuraiana	Rw0G015220 Rw7G029310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	15
AccIII	TCCGGA	1 cut(s)	211
AclWI	GGATC	5 cut(s)	96, 117, 130, 143, 1097
AcuI	CTGAAG	1 cut(s)	281
AfaI	GTAC	1 cut(s)	251
AfiI	CCNNNNNNNGG	4 cut(s)	58, 106, 163, 775
AgsI	TTSAA	5 cut(s)	507, 610, 826, 835, 956
AhlI	ACTAGT	1 cut(s)	719
AluBI	AGCT	8 cut(s)	25, 199, 247, 542, 904, 959, 1022, 1040
AluI	AGCT	8 cut(s)	25, 199, 247, 542, 904, 959, 1022, 1040
AlwI	GGATC	5 cut(s)	96, 117, 130, 143, 1097
Ama87I	CYCGRG	2 cut(s)	161, 203
Aor13HI	TCCGGA	1 cut(s)	211
AoxI	GGCC	2 cut(s)	231, 672
ApeKI	GCWGC	4 cut(s)	199, 428, 959, 1019
ArsI	GACNNNNNNTTYG	2 cut(s)	483, 515
AseI	ATTAAT	1 cut(s)	560
Asp700I	GAANNNNTTC	1 cut(s)	830
AspLEI	GCGC	1 cut(s)	357
AspS9I	GGNCC	2 cut(s)	232, 673
AsuC2I	CCSGG	3 cut(s)	107, 133, 235
AsuHPI	GGTGA	2 cut(s)	133, 513
AvaI	CYCGRG	2 cut(s)	161, 203
BamHI	GGATCC	1 cut(s)	135
BbvI	GCAGC	4 cut(s)	186, 415, 946, 1031
BcgI	CGANNNNNNTGC	2 cut(s)	22, 56
BclI	TGATCA	2 cut(s)	382, 1024
BcnI	CCSGG	3 cut(s)	107, 133, 235
BcuI	ACTAGT	1 cut(s)	719
BfaI	CTAG	3 cut(s)	720, 879, 918
BfmI	CTRYAG	2 cut(s)	533, 730
BisI	GCNGC	4 cut(s)	200, 429, 960, 1020
BlsI	GCNGC	4 cut(s)	201, 430, 961, 1021
Bme1390I	CCNGG	3 cut(s)	107, 133, 235
BmeT110I	CYCGRG	2 cut(s)	161, 203
BmgT120I	GGNCC	2 cut(s)	232, 673
BmiI	GGNNCC	1 cut(s)	137
BmrFI	CCNGG	3 cut(s)	107, 133, 235
BmsI	GCATC	5 cut(s)	178, 249, 445, 669, 1007
BpmI	CTGGAG	2 cut(s)	926, 1035
Bpu10I	CCTNAGC	1 cut(s)	770
BpuEI	CTTGAG	1 cut(s)	848
BpuMI	CCSGG	3 cut(s)	107, 133, 235
BsaBI	GATNNNNATC	1 cut(s)	465
BsaJI	CCNNGG	2 cut(s)	162, 192
BsaWI	WCCGGW	1 cut(s)	211
BsaXI	ACNNNNNCTCC	2 cut(s)	1083, 1113
Bsc4I	CCNNNNNNNGG	4 cut(s)	58, 106, 163, 775
Bse1I	ACTGG	1 cut(s)	15
Bse3DI	GCAATG	1 cut(s)	272
Bse8I	GATNNNNATC	1 cut(s)	465
BseAI	TCCGGA	1 cut(s)	211
BseDI	CCNNGG	2 cut(s)	162, 192
BseJI	GATNNNNATC	1 cut(s)	465
BseLI	CCNNNNNNNGG	4 cut(s)	58, 106, 163, 775
BseMI	GCAATG	1 cut(s)	272
BseMII	CTCAG	5 cut(s)	40, 77, 267, 386, 881
BseNI	ACTGG	1 cut(s)	15
BseRI	GAGGAG	2 cut(s)	887, 1067
BseXI	GCAGC	4 cut(s)	186, 415, 946, 1031
BshFI	GGCC	2 cut(s)	233, 674
BsiHKCI	CYCGRG	2 cut(s)	161, 203
BsiSI	CCGG	4 cut(s)	107, 133, 212, 235
BslI	CCNNNNNNNGG	4 cut(s)	58, 106, 163, 775
BsmI	GAATGC	1 cut(s)	277
BsnI	GGCC	2 cut(s)	233, 674
BsoBI	CYCGRG	2 cut(s)	161, 203
Bsp13I	TCCGGA	1 cut(s)	211
Bsp1407I	TGTACA	1 cut(s)	249
BspANI	GGCC	2 cut(s)	233, 674
BspCNI	CTCAG	5 cut(s)	39, 76, 268, 387, 882
BspEI	TCCGGA	1 cut(s)	211
BspHI	TCATGA	1 cut(s)	784
BspLI	GGNNCC	1 cut(s)	137
BspMAI	CTGCAG	1 cut(s)	537
BspPI	GGATC	5 cut(s)	96, 117, 130, 143, 1097
BsrDI	GCAATG	1 cut(s)	272
BsrGI	TGTACA	1 cut(s)	249
BsrI	ACTGG	1 cut(s)	15
BssECI	CCNNGG	2 cut(s)	162, 192
BssNAI	GTATAC	1 cut(s)	16
BssT1I	CCWWGG	1 cut(s)	192
Bst1107I	GTATAC	1 cut(s)	16
BstAPI	GCANNNNNTGC	1 cut(s)	995
BstAUI	TGTACA	1 cut(s)	249
BstC8I	GCNNGC	1 cut(s)	684
BstDEI	CTNAG	6 cut(s)	26, 63, 276, 395, 770, 890
BstENI	CCTNNNNNAGG	3 cut(s)	56, 161, 773
BstHHI	GCGC	1 cut(s)	357
BstMWI	GCNNNNNNNGC	3 cut(s)	281, 965, 995
BstNSI	RCATGY	1 cut(s)	686
BstSCI	CCNGG	3 cut(s)	105, 131, 233
BstSFI	CTRYAG	2 cut(s)	533, 730
BstV1I	GCAGC	4 cut(s)	186, 415, 946, 1031
BstX2I	RGATCY	3 cut(s)	88, 109, 135
BstYI	RGATCY	3 cut(s)	88, 109, 135
BstZ17I	GTATAC	1 cut(s)	16
BsuRI	GGCC	2 cut(s)	233, 674
BtgZI	GCGATG	2 cut(s)	55, 100
BtsIMutI	CAGTG	1 cut(s)	257
Cac8I	GCNNGC	1 cut(s)	684
CciI	TCATGA	1 cut(s)	784
CfoI	GCGC	1 cut(s)	357
Cfr13I	GGNCC	2 cut(s)	232, 673
Csp6I	GTAC	1 cut(s)	250
CviAII	CATG	3 cut(s)	598, 683, 785
CviQI	GTAC	1 cut(s)	250
DdeI	CTNAG	6 cut(s)	26, 63, 276, 395, 770, 890
Eco130I	CCWWGG	1 cut(s)	192
Eco32I	GATATC	1 cut(s)	860
Eco57I	CTGAAG	1 cut(s)	281
Eco88I	CYCGRG	2 cut(s)	161, 203
EcoNI	CCTNNNNNAGG	3 cut(s)	56, 161, 773
EcoRV	GATATC	1 cut(s)	860
EcoT14I	CCWWGG	1 cut(s)	192
EcoT22I	ATGCAT	1 cut(s)	684
ErhI	CCWWGG	1 cut(s)	192
FaeI	CATG	3 cut(s)	601, 686, 788
FaiI	YATR	8 cut(s)	16, 365, 599, 639, 684, 689, 786, 983
FatI	CATG	3 cut(s)	597, 682, 784
FbaI	TGATCA	2 cut(s)	382, 1024
FblI	GTMKAC	1 cut(s)	15
Fnu4HI	GCNGC	4 cut(s)	200, 429, 960, 1020
Fsp4HI	GCNGC	4 cut(s)	200, 429, 960, 1020
FspBI	CTAG	3 cut(s)	720, 879, 918
GlaI	GCGC	1 cut(s)	356
GluI	GCNGC	4 cut(s)	200, 429, 960, 1020
GsuI	CTGGAG	2 cut(s)	926, 1035
HaeIII	GGCC	2 cut(s)	233, 674
HapII	CCGG	4 cut(s)	107, 133, 212, 235
HhaI	GCGC	1 cut(s)	357
Hin1II	CATG	3 cut(s)	601, 686, 788
Hin6I	GCGC	1 cut(s)	355
HinP1I	GCGC	1 cut(s)	355
HinfI	GANTC	4 cut(s)	208, 335, 482, 914
HpaII	CCGG	4 cut(s)	107, 133, 212, 235
HphI	GGTGA	2 cut(s)	133, 513
Hpy166II	GTNNAC	1 cut(s)	16
Hpy188I	TCNGA	5 cut(s)	66, 82, 370, 454, 487
Hpy188III	TCNNGA	6 cut(s)	205, 212, 221, 326, 785, 1014
Hpy8I	GTNNAC	1 cut(s)	16
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	4 cut(s)	157, 418, 565, 604
HpyCH4V	TGCA	9 cut(s)	284, 391, 535, 601, 641, 682, 962, 989, 998
HpyF10VI	GCNNNNNNNGC	3 cut(s)	281, 965, 995
HpyF3I	CTNAG	6 cut(s)	26, 63, 276, 395, 770, 890
Hsp92II	CATG	3 cut(s)	601, 686, 788
HspAI	GCGC	1 cut(s)	355
Kpn2I	TCCGGA	1 cut(s)	211
Ksp22I	TGATCA	2 cut(s)	382, 1024
LmnI	GCTCC	3 cut(s)	196, 237, 1016
Lsp1109I	GCAGC	4 cut(s)	186, 415, 946, 1031
LweI	GCATC	5 cut(s)	178, 249, 445, 669, 1007
MaeI	CTAG	3 cut(s)	720, 879, 918
MaeIII	GTNAC	2 cut(s)	43, 312
MboII	GAAGA	4 cut(s)	83, 179, 565, 773
MflI	RGATCY	3 cut(s)	88, 109, 135
MluCI	AATT	8 cut(s)	350, 510, 557, 561, 656, 703, 821, 1034
Mph1103I	ATGCAT	1 cut(s)	684
MroI	TCCGGA	1 cut(s)	211
MroXI	GAANNNNTTC	1 cut(s)	830
MseI	TTAA	5 cut(s)	375, 416, 560, 662, 816
MspA1I	CMGCKG	1 cut(s)	1022
MspI	CCGG	4 cut(s)	107, 133, 212, 235
MspR9I	CCNGG	3 cut(s)	107, 133, 235
Mva1269I	GAATGC	1 cut(s)	277
MwoI	GCNNNNNNNGC	3 cut(s)	281, 965, 995
NciI	CCSGG	3 cut(s)	107, 133, 235
NlaIII	CATG	3 cut(s)	601, 686, 788
NlaIV	GGNNCC	1 cut(s)	137
NmuCI	GTSAC	1 cut(s)	43
NsiI	ATGCAT	1 cut(s)	684
NspI	RCATGY	1 cut(s)	686
PaeI	GCATGC	1 cut(s)	686
PaeR7I	CTCGAG	1 cut(s)	203
PagI	TCATGA	1 cut(s)	784
PcsI	WCGNNNNNNNCGW	1 cut(s)	78
PctI	GAATGC	1 cut(s)	277
PdmI	GAANNNNTTC	1 cut(s)	830
PfeI	GAWTC	4 cut(s)	208, 335, 482, 914
PkrI	GCNGC	4 cut(s)	201, 430, 961, 1021
PshBI	ATTAAT	1 cut(s)	560
PspN4I	GGNNCC	1 cut(s)	137
PspPI	GGNCC	2 cut(s)	232, 673
PstI	CTGCAG	1 cut(s)	537
PsuI	RGATCY	3 cut(s)	88, 109, 135
PvuII	CAGCTG	1 cut(s)	1022
RsaI	GTAC	1 cut(s)	251
RsaNI	GTAC	1 cut(s)	250
SaqAI	TTAA	5 cut(s)	375, 416, 560, 662, 816
SatI	GCNGC	4 cut(s)	200, 429, 960, 1020
Sau96I	GGNCC	2 cut(s)	232, 673
ScrFI	CCNGG	3 cut(s)	107, 133, 235
SfaNI	GCATC	5 cut(s)	178, 249, 445, 669, 1007
SfcI	CTRYAG	2 cut(s)	533, 730
Sfr274I	CTCGAG	1 cut(s)	203
SlaI	CTCGAG	1 cut(s)	203
SmlI	CTYRAG	2 cut(s)	203, 863
SmoI	CTYRAG	2 cut(s)	203, 863
SpeI	ACTAGT	1 cut(s)	719
SphI	GCATGC	1 cut(s)	686
Sse9I	AATT	8 cut(s)	350, 510, 557, 561, 656, 703, 821, 1034
SspMI	CTAG	3 cut(s)	720, 879, 918
StyD4I	CCNGG	3 cut(s)	105, 131, 233
StyI	CCWWGG	1 cut(s)	192
TaqI	TCGA	4 cut(s)	5, 57, 150, 204
TasI	AATT	8 cut(s)	350, 510, 557, 561, 656, 703, 821, 1034
TatI	WGTACW	1 cut(s)	249
TfiI	GAWTC	4 cut(s)	208, 335, 482, 914
Tru1I	TTAA	5 cut(s)	375, 416, 560, 662, 816
Tru9I	TTAA	5 cut(s)	375, 416, 560, 662, 816
TscAI	CASTG	1 cut(s)	264
TseFI	GTSAC	1 cut(s)	43
TseI	GCWGC	4 cut(s)	199, 428, 959, 1019
Tsp45I	GTSAC	1 cut(s)	43
TspDTI	ATGAA	7 cut(s)	506, 600, 773, 777, 804, 812, 1110
TspGWI	ACGGA	2 cut(s)	1095, 1104
TspRI	CASTG	1 cut(s)	264
VspI	ATTAAT	1 cut(s)	560
XagI	CCTNNNNNAGG	3 cut(s)	56, 161, 773
XceI	RCATGY	1 cut(s)	686
XhoI	CTCGAG	1 cut(s)	203
XmiI	GTMKAC	1 cut(s)	15
XmnI	GAANNNNTTC	1 cut(s)	830
XspI	CTAG	3 cut(s)	720, 879, 918
Zsp2I	ATGCAT	1 cut(s)	684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.