Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0002625

Physical Location & Seq

Genomic Coordinates Reverse (-)

29921465 .. 29922577

Gene Structure 1113 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1232500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGTCGAAGTTTGAGTACCCGAAGCTTACTCGCCCCGACATCGTCACAATCCTCGCCGACGCTCACATCGTCGCTATTTCCGACCGCGATCTCGTCAACCCCAACCCTGATTTCGTCGCCGACCTCTACACCCGCATCCTCGTCTCCCTCGACTTCTTCCACGAGGAAGATTTTGGGCAGGTTGAGTTTTCGGCCTTGGAGCAGCTCCAGAACCCTGATTTTCACATGGACTCGGCCCGGACCATGAAGCTATGCAACAGAATCAAGGAAGTGGTGGCTTTAGTAGATTGTCAAAGAGATTTACCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000070 GO:0000228 GO:0000278 GO:0000280 GO:0000775 GO:0000776 GO:0000777 GO:0000778 GO:0000779 GO:0000780 GO:0000793 GO:0000794 GO:0000819 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005773 GO:0005774 GO:0005815 GO:0005816 GO:0005856 GO:0005886 GO:0006996 GO:0007049 GO:0007059 GO:0007080 GO:0007127 GO:0008150 GO:0008608 GO:0009987 GO:0015630 GO:0016020 GO:0016043 GO:0022402 GO:0022414 GO:0031090 GO:0031262 GO:0031617 GO:0031974 GO:0031981 GO:0032991 GO:0035974 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044437 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0048285 GO:0050000 GO:0051179 GO:0051234 GO:0051276 GO:0051303 GO:0051310 GO:0051315 GO:0051316 GO:0051321 GO:0051455 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0061982 GO:0070013 GO:0071840 GO:0071944 GO:0098588 GO:0098687 GO:0098805 GO:0098813 GO:0140013 GO:0140014 GO:1903046 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nuf2

Protein Analysis

103

Amino Acids

11.75

Weight (kDa)

4.61

Isoelectric Point (pI)

21.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nuf2	PF03800	3 - 92	9.4e-15	Nuf2 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61000
fragaria_vesca	FvH4_6g25020 FvH4_6g25020 FvH4_6g25020 FvH4_6g25020 FvH4_6g25020 FvH4_6g25020 FvH4_7g06682 FvH4_7g06682 FvH4_7g06682 FvH4_7g06682 FvH4_7g06682
malus_domestica	MD08G1232500.v1.1 MD08G1233000.v1.1 MD15G1425300.v1.1
prunus_persica	Prupe.1G570900_v2.0.a1 Prupe.1G570900_v2.0.a1
pyrus_communis	pycom08g20190 pycom15g37700
rosa_chinensis	RchiOBHm_Chr1g0336301 RchiOBHm_Chr7g0222021
rosa_laevigata	RLG00000002102 RLG00000029374
rosa_multiflora	Rmu_co8043290.1_g000001 Rmu_sc0001453.1_g000009 Rmu_sc0004325.1_g000003
rosa_roxburghii	Rroxscaffold_3G00237490 Rroxscaffold_4G00315800
rosa_rugosa	Rorug01G0123600 Rorug07G0205100
rosa_samantha	Rh1AG144300 Rh1BG113700 Rh1CG135800 Rh1DG150800 Rh7AG345600 Rh7BG336200 Rh7CG363300 Rh7DG343900
rosa_wichuraiana	Rw0G015220 Rw7G029310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	169
AccII	CGCG	1 cut(s)	87
AciI	CCGC	2 cut(s)	85, 133
AfaI	GTAC	1 cut(s)	17
AjuI	GAANNNNNNNTTGG	2 cut(s)	95, 127
AluBI	AGCT	3 cut(s)	25, 205, 250
AluI	AGCT	3 cut(s)	25, 205, 250
Alw26I	GTCTC	1 cut(s)	148
AoxI	GGCC	2 cut(s)	192, 234
ApeKI	GCWGC	1 cut(s)	202
AspS9I	GGNCC	2 cut(s)	235, 240
AsuC2I	CCSGG	1 cut(s)	238
AvaII	GGWCC	1 cut(s)	240
BarI	GAAGNNNNNNTAC	1 cut(s)	31
BauI	CACGAG	1 cut(s)	161
BbvI	GCAGC	1 cut(s)	214
BcnI	CCSGG	1 cut(s)	238
BcoDI	GTCTC	1 cut(s)	148
BfuAI	ACCTGC	1 cut(s)	169
BisI	GCNGC	1 cut(s)	203
BlsI	GCNGC	1 cut(s)	204
Bme1390I	CCNGG	1 cut(s)	238
Bme18I	GGWCC	1 cut(s)	240
BmgT120I	GGNCC	2 cut(s)	235, 240
BmrFI	CCNGG	1 cut(s)	238
BmsI	GCATC	1 cut(s)	144
BpmI	CTGGAG	1 cut(s)	191
BpuMI	CCSGG	1 cut(s)	238
BsaJI	CCNNGG	1 cut(s)	195
BseDI	CCNNGG	1 cut(s)	195
BseGI	GGATG	1 cut(s)	135
BseXI	GCAGC	1 cut(s)	214
Bsh1236I	CGCG	1 cut(s)	87
Bsh1285I	CGRYCG	1 cut(s)	85
BshFI	GGCC	2 cut(s)	194, 236
BsiEI	CGRYCG	1 cut(s)	85
BsiSI	CCGG	1 cut(s)	238
BsmAI	GTCTC	1 cut(s)	148
BsmBI	CGTCTC	1 cut(s)	148
BsnI	GGCC	2 cut(s)	194, 236
Bsp143I	GATC	1 cut(s)	88
BspACI	CCGC	2 cut(s)	85, 133
BspANI	GGCC	2 cut(s)	194, 236
BspFNI	CGCG	1 cut(s)	87
BspMI	ACCTGC	1 cut(s)	169
BssECI	CCNNGG	1 cut(s)	195
BssMI	GATC	1 cut(s)	88
BssSI	CACGAG	1 cut(s)	161
BssT1I	CCWWGG	1 cut(s)	195
Bst2BI	CACGAG	1 cut(s)	161
BstF5I	GGATG	1 cut(s)	135
BstFNI	CGCG	1 cut(s)	87
BstKTI	GATC	1 cut(s)	91
BstMAI	GTCTC	1 cut(s)	148
BstMBI	GATC	1 cut(s)	88
BstMCI	CGRYCG	1 cut(s)	85
BstSCI	CCNGG	1 cut(s)	236
BstUI	CGCG	1 cut(s)	87
BstV1I	GCAGC	1 cut(s)	214
BsuRI	GGCC	2 cut(s)	194, 236
BtsCI	GGATG	1 cut(s)	135
BveI	ACCTGC	1 cut(s)	169
Cfr13I	GGNCC	2 cut(s)	235, 240
CseI	GACGC	1 cut(s)	68
Csp6I	GTAC	1 cut(s)	16
CviAII	CATG	2 cut(s)	226, 244
CviJI	RGCY	6 cut(s)	25, 194, 205, 236, 250, 278
CviKI_1	RGCY	6 cut(s)	25, 194, 205, 236, 250, 278
CviQI	GTAC	1 cut(s)	16
DpnI	GATC	1 cut(s)	90
DpnII	GATC	1 cut(s)	88
Eco130I	CCWWGG	1 cut(s)	195
Eco47I	GGWCC	1 cut(s)	240
EcoT14I	CCWWGG	1 cut(s)	195
ErhI	CCWWGG	1 cut(s)	195
Esp3I	CGTCTC	1 cut(s)	148
FaeI	CATG	2 cut(s)	229, 247
FaiI	YATR	3 cut(s)	227, 245, 253
FatI	CATG	2 cut(s)	225, 243
FauI	CCCGC	1 cut(s)	140
Fnu4HI	GCNGC	1 cut(s)	203
FokI	GGATG	1 cut(s)	122
Fsp4HI	GCNGC	1 cut(s)	203
GluI	GCNGC	1 cut(s)	203
GsuI	CTGGAG	1 cut(s)	191
HaeIII	GGCC	2 cut(s)	194, 236
HapII	CCGG	1 cut(s)	238
HgaI	GACGC	1 cut(s)	68
Hin1II	CATG	2 cut(s)	229, 247
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HindIII	AAGCTT	1 cut(s)	23
HinfI	GANTC	2 cut(s)	230, 261
HpaII	CCGG	1 cut(s)	238
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188I	TCNGA	1 cut(s)	82
Hpy188III	TCNNGA	1 cut(s)	208
Hpy8I	GTNNAC	1 cut(s)	97
Hpy99I	CGWCG	3 cut(s)	62, 74, 119
HpyCH4V	TGCA	1 cut(s)	255
Hsp92II	CATG	2 cut(s)	229, 247
Kzo9I	GATC	1 cut(s)	88
LmnI	GCTCC	2 cut(s)	199, 210
LpnPI	CCDG	5 cut(s)	120, 164, 221, 228, 251
Lsp1109I	GCAGC	1 cut(s)	214
LweI	GCATC	1 cut(s)	144
MaeIII	GTNAC	1 cut(s)	43
MalI	GATC	1 cut(s)	90
MboI	GATC	1 cut(s)	88
MboII	GAAGA	2 cut(s)	148, 179
MlyI	GAGTC	1 cut(s)	224
MmeI	TCCRAC	1 cut(s)	105
MnlI	CCTC	5 cut(s)	62, 134, 149, 157, 158
MseI	TTAA	1 cut(s)	307
MspI	CCGG	1 cut(s)	238
MspR9I	CCNGG	1 cut(s)	238
MvnI	CGCG	1 cut(s)	87
NciI	CCSGG	1 cut(s)	238
NdeII	GATC	1 cut(s)	88
NlaIII	CATG	2 cut(s)	229, 247
NmeAIII	GCCGAG	1 cut(s)	212
NmuCI	GTSAC	1 cut(s)	43
PcsI	WCGNNNNNNNCGW	3 cut(s)	66, 78, 147
PfeI	GAWTC	1 cut(s)	261
PflFI	GACNNNGTC	1 cut(s)	41
PkrI	GCNGC	1 cut(s)	204
PleI	GAGTC	1 cut(s)	224
PpsI	GAGTC	1 cut(s)	224
PspPI	GGNCC	2 cut(s)	235, 240
PsyI	GACNNNGTC	1 cut(s)	41
RsaI	GTAC	1 cut(s)	17
RsaNI	GTAC	1 cut(s)	16
SaqAI	TTAA	1 cut(s)	307
SatI	GCNGC	1 cut(s)	203
Sau3AI	GATC	1 cut(s)	88
Sau96I	GGNCC	2 cut(s)	235, 240
SchI	GAGTC	1 cut(s)	224
ScrFI	CCNGG	1 cut(s)	238
SetI	ASST	6 cut(s)	27, 126, 183, 207, 252, 307
SfaNI	GCATC	1 cut(s)	144
SinI	GGWCC	1 cut(s)	240
SsiI	CCGC	2 cut(s)	85, 133
StyD4I	CCNGG	1 cut(s)	236
StyI	CCWWGG	1 cut(s)	195
TaqI	TCGA	2 cut(s)	5, 150
TfiI	GAWTC	1 cut(s)	261
Tru1I	TTAA	1 cut(s)	307
Tru9I	TTAA	1 cut(s)	307
TseFI	GTSAC	1 cut(s)	43
TseI	GCWGC	1 cut(s)	202
Tsp45I	GTSAC	1 cut(s)	43
TspDTI	ATGAA	1 cut(s)	260
Tth111I	GACNNNGTC	1 cut(s)	41
VpaK11BI	GGWCC	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.