Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0002625

Physical Location & Seq

Genomic Coordinates Reverse (-)

35027901 .. 35033627

Gene Structure 5727 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG336200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGTCAAAGTTCGTGTACCCTCGGCTGTCCCGGAGCGACATAGTGTCAATCGTGATGGACGCTCAGATCATGGATATTTCGGAGCACCATCTTCTCAACCCCAACCCTGATTTCGTCGCCGACCTCTACACCCGCATCCTCATCGCTCTCGACTTCTTCAATCAGGATTTTGGGCAAGTTGATTTCGATGCCTTGCAGCAGTTTGAGAATCCAGATTTTCATGAGACCTCCCTCCACAGCATCAACCTCTGCAACAGAATCAAGCAATTGAATGCTGAGATTGCGGGTTTCAATGAAGCAAGAGAAAAGGAGTTGCCTCTTCTTCAGGAGGTAGATGCCAGAGTTAAAGAATTGCGCCAAACCATTGAAGGCCTCAACAACGACCAAGTTAAAGTCAGAACTTCTCTTAAGAAGTTGAAGGAGAAGAGTGGAGAAATGGACAAAGAGATTTCTGATGCTGATTTTGATCTGCTAAAATGTGATTCCGAGAGACAAGAATTACGTTCAAGAATTGTACAGTCACCAGATAAACTGCAGAGGGCTGTAGAAGAGAAGAAATCAATTCGAGAGAAGGCAAAGAATGATGAAATGTCAGCCATGCAATCTTTTAAGGAGAAGACTGCTGTTGAGGAGGTTTATACGAAGGTTCTAAAGAAATTATCAAAGCACTTGGCCCAGATGCAAGCTATACAAGAACAGGTCAATTCTGCTAAATTTGCTGGCAAAGACTATAAAGCATTAAAAGATAAAATAAGTGATGATGAAATCCTGATCAAGTCTCTTCAGAACGAAGTTGTGAAACGACAGGCAAAAGTGAAAGATTTGAATGACTTGAAAAGGAAACTAGAAAAGGAAAGAGATCTAAAGTTTGAGGAGGCTACTAAAGAATATAGTAATGTCAAGCTGGAGGTGGAATCAAGGAGGGGTGTTCTCGAAGCAAGGCAAAAGGATGTTGAAGCTGCTGTAGCAGAGGTGGATTCTATAACTGCAAAGGTTGCCTCGGTAAGAAAATCTGCAGCAGCCGATCAGCAAGCATTAGCTCATAAGTGTGAGGAGATCATTAAAGAGTTCCACCAATATGCAAGTTCAATTGGGGTCTTGCTGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000070 GO:0000228 GO:0000278 GO:0000280 GO:0000775 GO:0000776 GO:0000777 GO:0000778 GO:0000779 GO:0000780 GO:0000793 GO:0000794 GO:0000819 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005773 GO:0005774 GO:0005815 GO:0005816 GO:0005856 GO:0005886 GO:0006996 GO:0007049 GO:0007059 GO:0007080 GO:0007127 GO:0008150 GO:0008608 GO:0009987 GO:0015630 GO:0016020 GO:0016043 GO:0022402 GO:0022414 GO:0031090 GO:0031262 GO:0031617 GO:0031974 GO:0031981 GO:0032991 GO:0035974 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044437 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0048285 GO:0050000 GO:0051179 GO:0051234 GO:0051276 GO:0051303 GO:0051310 GO:0051315 GO:0051316 GO:0051321 GO:0051455 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0061982 GO:0070013 GO:0071840 GO:0071944 GO:0098588 GO:0098687 GO:0098805 GO:0098813 GO:0140013 GO:0140014 GO:1903046 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nuf2

Protein Analysis

369

Amino Acids

42.33

Weight (kDa)

5.96

Isoelectric Point (pI)

34.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nuf2	PF03800	4 - 94	1.7e-11	Nuf2 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61000
fragaria_vesca	FvH4_6g25020 FvH4_6g25020 FvH4_6g25020 FvH4_6g25020 FvH4_6g25020 FvH4_6g25020 FvH4_7g06682 FvH4_7g06682 FvH4_7g06682 FvH4_7g06682 FvH4_7g06682
malus_domestica	MD08G1232500.v1.1 MD08G1233000.v1.1 MD15G1425300.v1.1
prunus_persica	Prupe.1G570900_v2.0.a1 Prupe.1G570900_v2.0.a1
pyrus_communis	pycom08g20190 pycom15g37700
rosa_chinensis	RchiOBHm_Chr1g0336301 RchiOBHm_Chr7g0222021
rosa_laevigata	RLG00000002102 RLG00000029374
rosa_multiflora	Rmu_co8043290.1_g000001 Rmu_sc0001453.1_g000009 Rmu_sc0004325.1_g000003
rosa_roxburghii	Rroxscaffold_3G00237490 Rroxscaffold_4G00315800
rosa_rugosa	Rorug01G0123600 Rorug07G0205100
rosa_samantha	Rh1AG144300 Rh1BG113700 Rh1CG135800 Rh1DG150800 Rh7AG345600 Rh7BG336200 Rh7CG363300 Rh7DG343900
rosa_wichuraiana	Rw0G015220 Rw7G029310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	133, 284
AcsI	RAATTY	1 cut(s)	713
AcuI	CTGAAG	2 cut(s)	308, 767
AfaI	GTAC	2 cut(s)	17, 516
AflII	CTTAAG	1 cut(s)	407
AhdI	GACNNNNNGTC	1 cut(s)	43
AjuI	GAANNNNNNNTTGG	2 cut(s)	95, 127
AluBI	AGCT	4 cut(s)	686, 904, 959, 1040
AluI	AGCT	4 cut(s)	686, 904, 959, 1040
Alw21I	GWGCWC	1 cut(s)	87
Alw26I	GTCTC	3 cut(s)	218, 484, 783
AoxI	GGCC	2 cut(s)	370, 672
ApeKI	GCWGC	5 cut(s)	196, 959, 1016, 1019, 1102
ApoI	RAATTY	1 cut(s)	713
AspLEI	GCGC	1 cut(s)	357
AspS9I	GGNCC	1 cut(s)	673
AsuC2I	CCSGG	1 cut(s)	31
AsuHPI	GGTGA	1 cut(s)	513
BbsI	GAAGAC	1 cut(s)	623
Bbv12I	GWGCWC	1 cut(s)	87
BbvI	GCAGC	5 cut(s)	208, 946, 1028, 1031, 1089
BccI	CCATC	2 cut(s)	49, 96
BcgI	CGANNNNNNTGC	2 cut(s)	124, 158
BclI	TGATCA	1 cut(s)	771
BcnI	CCSGG	1 cut(s)	31
BcoDI	GTCTC	3 cut(s)	218, 484, 783
BfaI	CTAG	1 cut(s)	845
BfmI	CTRYAG	4 cut(s)	533, 543, 963, 1014
BfrI	CTTAAG	1 cut(s)	407
BglII	AGATCT	1 cut(s)	859
BisI	GCNGC	5 cut(s)	197, 960, 1017, 1020, 1103
BlsI	GCNGC	5 cut(s)	198, 961, 1018, 1021, 1104
Bme1390I	CCNGG	1 cut(s)	31
BmeRI	GACNNNNNGTC	1 cut(s)	43
BmgT120I	GGNCC	1 cut(s)	673
BmrFI	CCNGG	1 cut(s)	31
BmsI	GCATC	6 cut(s)	144, 178, 249, 325, 445, 669
BpiI	GAAGAC	1 cut(s)	623
BpmI	CTGGAG	1 cut(s)	926
BpuMI	CCSGG	1 cut(s)	31
BsaBI	GATNNNNATC	1 cut(s)	465
BsaI	GGTCTC	1 cut(s)	218
BsaJI	CCNNGG	2 cut(s)	20, 999
Bse8I	GATNNNNATC	1 cut(s)	465
BseDI	CCNNGG	2 cut(s)	20, 999
BseGI	GGATG	2 cut(s)	135, 955
BseJI	GATNNNNATC	1 cut(s)	465
BseMII	CTCAG	2 cut(s)	77, 267
BseRI	GAGGAG	3 cut(s)	644, 887, 1067
BseXI	GCAGC	5 cut(s)	208, 946, 1028, 1031, 1089
BshFI	GGCC	2 cut(s)	372, 674
BsiHKAI	GWGCWC	1 cut(s)	87
BsiSI	CCGG	1 cut(s)	31
BslFI	GGGAC	1 cut(s)	13
BsmAI	GTCTC	3 cut(s)	218, 484, 783
BsmFI	GGGAC	1 cut(s)	13
BsmI	GAATGC	1 cut(s)	277
BsnI	GGCC	2 cut(s)	372, 674
Bso31I	GGTCTC	1 cut(s)	218
Bsp1286I	GDGCHC	1 cut(s)	87
Bsp1407I	TGTACA	1 cut(s)	514
Bsp143I	GATC	6 cut(s)	66, 466, 771, 859, 1024, 1056
BspACI	CCGC	2 cut(s)	133, 284
BspANI	GGCC	2 cut(s)	372, 674
BspCNI	CTCAG	2 cut(s)	76, 268
BspHI	TCATGA	1 cut(s)	220
BspMAI	CTGCAG	2 cut(s)	537, 1018
BspTI	CTTAAG	1 cut(s)	407
BspTNI	GGTCTC	1 cut(s)	218
BsrGI	TGTACA	1 cut(s)	514
BssECI	CCNNGG	2 cut(s)	20, 999
BssMI	GATC	6 cut(s)	66, 466, 771, 859, 1024, 1056
Bst4CI	ACNGT	1 cut(s)	519
Bst6I	CTCTTC	4 cut(s)	324, 419, 543, 786
BstAFI	CTTAAG	1 cut(s)	407
BstAPI	GCANNNNNTGC	1 cut(s)	995
BstAUI	TGTACA	1 cut(s)	514
BstC8I	GCNNGC	3 cut(s)	684, 721, 1032
BstDEI	CTNAG	2 cut(s)	63, 276
BstF5I	GGATG	2 cut(s)	135, 955
BstHHI	GCGC	1 cut(s)	357
BstKTI	GATC	6 cut(s)	69, 469, 774, 862, 1027, 1059
BstMAI	GTCTC	3 cut(s)	218, 484, 783
BstMBI	GATC	6 cut(s)	66, 466, 771, 859, 1024, 1056
BstMWI	GCNNNNNNNGC	4 cut(s)	281, 716, 965, 995
BstSCI	CCNGG	1 cut(s)	29
BstSFI	CTRYAG	4 cut(s)	533, 543, 963, 1014
BstV1I	GCAGC	5 cut(s)	208, 946, 1028, 1031, 1089
BstV2I	GAAGAC	1 cut(s)	623
BstX2I	RGATCY	1 cut(s)	859
BstYI	RGATCY	1 cut(s)	859
BsuRI	GGCC	2 cut(s)	372, 674
BtgZI	GCGATG	1 cut(s)	127
BtsCI	GGATG	2 cut(s)	135, 955
Cac8I	GCNNGC	3 cut(s)	684, 721, 1032
CciI	TCATGA	1 cut(s)	220
CfoI	GCGC	1 cut(s)	357
Cfr13I	GGNCC	1 cut(s)	673
CseI	GACGC	1 cut(s)	68
Csp6I	GTAC	2 cut(s)	16, 515
CviAII	CATG	3 cut(s)	70, 221, 598
CviQI	GTAC	2 cut(s)	16, 515
DdeI	CTNAG	2 cut(s)	63, 276
DpnI	GATC	6 cut(s)	68, 468, 773, 861, 1026, 1058
DpnII	GATC	6 cut(s)	66, 466, 771, 859, 1024, 1056
DriI	GACNNNNNGTC	1 cut(s)	43
Eam1104I	CTCTTC	4 cut(s)	324, 419, 543, 786
Eam1105I	GACNNNNNGTC	1 cut(s)	43
EarI	CTCTTC	4 cut(s)	324, 419, 543, 786
Eco147I	AGGCCT	1 cut(s)	372
Eco31I	GGTCTC	1 cut(s)	218
Eco57I	CTGAAG	2 cut(s)	308, 767
FaeI	CATG	3 cut(s)	73, 224, 601
FaqI	GGGAC	1 cut(s)	13
FatI	CATG	3 cut(s)	69, 220, 597
FauI	CCCGC	2 cut(s)	140, 277
FbaI	TGATCA	1 cut(s)	771
Fnu4HI	GCNGC	5 cut(s)	197, 960, 1017, 1020, 1103
FokI	GGATG	2 cut(s)	122, 962
Fsp4HI	GCNGC	5 cut(s)	197, 960, 1017, 1020, 1103
FspBI	CTAG	1 cut(s)	845
GlaI	GCGC	1 cut(s)	356
GluI	GCNGC	5 cut(s)	197, 960, 1017, 1020, 1103
GsuI	CTGGAG	1 cut(s)	926
HaeIII	GGCC	2 cut(s)	372, 674
HapII	CCGG	1 cut(s)	31
HgaI	GACGC	1 cut(s)	68
HhaI	GCGC	1 cut(s)	357
Hin1II	CATG	3 cut(s)	73, 224, 601
Hin6I	GCGC	1 cut(s)	355
HinP1I	GCGC	1 cut(s)	355
HinfI	GANTC	5 cut(s)	208, 258, 482, 914, 977
HpaII	CCGG	1 cut(s)	31
HphI	GGTGA	1 cut(s)	513
Hpy166II	GTNNAC	1 cut(s)	16
Hpy188I	TCNGA	6 cut(s)	66, 82, 398, 454, 487, 786
Hpy8I	GTNNAC	1 cut(s)	16
Hpy99I	CGWCG	1 cut(s)	119
HpyAV	CCTTC	4 cut(s)	362, 412, 565, 637
HpyCH4III	ACNGT	1 cut(s)	519
HpyCH4IV	ACGT	1 cut(s)	502
HpyCH4V	TGCA	9 cut(s)	196, 252, 535, 601, 682, 989, 1016, 1082, 1105
HpyF10VI	GCNNNNNNNGC	4 cut(s)	281, 716, 965, 995
HpyF3I	CTNAG	2 cut(s)	63, 276
HpySE526I	ACGT	1 cut(s)	502
Hsp92II	CATG	3 cut(s)	73, 224, 601
HspAI	GCGC	1 cut(s)	355
Ksp22I	TGATCA	1 cut(s)	771
Kzo9I	GATC	6 cut(s)	66, 466, 771, 859, 1024, 1056
LmnI	GCTCC	2 cut(s)	33, 82
Lsp1109I	GCAGC	5 cut(s)	208, 946, 1028, 1031, 1089
LweI	GCATC	6 cut(s)	144, 178, 249, 325, 445, 669
MaeI	CTAG	1 cut(s)	845
MaeII	ACGT	1 cut(s)	502
MaeIII	GTNAC	1 cut(s)	519
MalI	GATC	6 cut(s)	68, 468, 773, 861, 1026, 1058
MboI	GATC	6 cut(s)	66, 466, 771, 859, 1024, 1056
MboII	GAAGA	9 cut(s)	83, 148, 311, 314, 436, 560, 565, 628, 773
MfeI	CAATTG	2 cut(s)	266, 1089
MflI	RGATCY	1 cut(s)	859
MhlI	GDGCHC	1 cut(s)	87
MluCI	AATT	9 cut(s)	266, 350, 497, 510, 561, 656, 703, 713, 1089
MseI	TTAA	6 cut(s)	345, 390, 408, 609, 740, 1062
MslI	CAYNNNNRTG	2 cut(s)	1047, 1077
MspCI	CTTAAG	1 cut(s)	407
MspI	CCGG	1 cut(s)	31
MspR9I	CCNGG	1 cut(s)	31
MunI	CAATTG	2 cut(s)	266, 1089
Mva1269I	GAATGC	1 cut(s)	277
MwoI	GCNNNNNNNGC	4 cut(s)	281, 716, 965, 995
NciI	CCSGG	1 cut(s)	31
NdeII	GATC	6 cut(s)	66, 466, 771, 859, 1024, 1056
NlaIII	CATG	3 cut(s)	73, 224, 601
NmuCI	GTSAC	1 cut(s)	519
PagI	TCATGA	1 cut(s)	220
PceI	AGGCCT	1 cut(s)	372
PctI	GAATGC	1 cut(s)	277
PfeI	GAWTC	5 cut(s)	208, 258, 482, 914, 977
PfoI	TCCNGGA	1 cut(s)	29
PkrI	GCNGC	5 cut(s)	198, 961, 1018, 1021, 1104
PspPI	GGNCC	1 cut(s)	673
PstI	CTGCAG	2 cut(s)	537, 1018
PsuI	RGATCY	1 cut(s)	859
RsaI	GTAC	2 cut(s)	17, 516
RsaNI	GTAC	2 cut(s)	16, 515
RseI	CAYNNNNRTG	2 cut(s)	1047, 1077
SaqAI	TTAA	6 cut(s)	345, 390, 408, 609, 740, 1062
SatI	GCNGC	5 cut(s)	197, 960, 1017, 1020, 1103
Sau3AI	GATC	6 cut(s)	66, 466, 771, 859, 1024, 1056
Sau96I	GGNCC	1 cut(s)	673
ScrFI	CCNGG	1 cut(s)	31
SduI	GDGCHC	1 cut(s)	87
SfaNI	GCATC	6 cut(s)	144, 178, 249, 325, 445, 669
SfcI	CTRYAG	4 cut(s)	533, 543, 963, 1014
SmiMI	CAYNNNNRTG	2 cut(s)	1047, 1077
SmlI	CTYRAG	1 cut(s)	407
SmoI	CTYRAG	1 cut(s)	407
Sse9I	AATT	9 cut(s)	266, 350, 497, 510, 561, 656, 703, 713, 1089
SseBI	AGGCCT	1 cut(s)	372
SsiI	CCGC	2 cut(s)	133, 284
SspMI	CTAG	1 cut(s)	845
StuI	AGGCCT	1 cut(s)	372
StyD4I	CCNGG	1 cut(s)	29
TaaI	ACNGT	1 cut(s)	519
TaiI	ACGT	1 cut(s)	505
TaqI	TCGA	4 cut(s)	150, 186, 565, 933
TasI	AATT	9 cut(s)	266, 350, 497, 510, 561, 656, 703, 713, 1089
TatI	WGTACW	1 cut(s)	514
TfiI	GAWTC	5 cut(s)	208, 258, 482, 914, 977
Tru1I	TTAA	6 cut(s)	345, 390, 408, 609, 740, 1062
Tru9I	TTAA	6 cut(s)	345, 390, 408, 609, 740, 1062
TseFI	GTSAC	1 cut(s)	519
TseI	GCWGC	5 cut(s)	196, 959, 1016, 1019, 1102
Tsp45I	GTSAC	1 cut(s)	519
TspDTI	ATGAA	4 cut(s)	209, 309, 600, 777
Vha464I	CTTAAG	1 cut(s)	407
XapI	RAATTY	1 cut(s)	713
XspI	CTAG	1 cut(s)	845

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.