AT1G63460

Glutathione peroxidase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
23534946 .. 23536467
1522 bp
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UTR
Exon/CDS
Intron
AT1G63460.1

Sequence Viewer

Length: 504 bp
ATGGCGACGAAGGAACCAGAATCTGTTTACGAGTTAAGCATCGAGGATGCAAAAGGGAACAACTTAGCACTCAGTCAATACAAAGACAAAGTTCTTTTAATTGTCAATGTTGCTTCCAAATGTGGGATGACAAACTCAAACTACACTGAATTGAATGAGCTTTACAACAGGTATAAAGATAAAGGTCTGGAGATTCTAGCATTTCCTTGTAACCAGTTTGGTGACGAGGAACCGGGAACTAATGACCAAATTACTGACTTTGTTTGTACTCGCTTCAAATCTGAATTCCCCATTTTCAACAAGATTGAAGTAAACGGAGAGAATGCTTCTCCTCTGTATAAGTTCCTGAAGAAAGGCAAATGGGGAATCTTCGGCGATGACATTCAATGGAACTTTGCTAAGTTTCTTGTTGACAAAAACGGTCAAGCTGTACAACGTTATTATCCAACTACTTCCCCTCTTACACTTGAGCATGACATAAAGAATCTTCTGAATATCTCCTGA

Protein Analysis

167

Amino Acids

19.07

Weight (kDa)

5.11

Isoelectric Point (pI)

24.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GSHPx PF00255 9 - 117 3.7e-43 Glutathione peroxidase
AhpC-TSA PF00578 11 - 71 4.9e-06 AhpC/TSA family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 436
AcsI RAATTY 1 cut(s) 284
AcuI CTGAAG 1 cut(s) 368
AfaI GTAC 2 cut(s) 268, 432
AfiI CCNNNNNNNGG 1 cut(s) 123
AgsI TTSAA 5 cut(s) 154, 277, 298, 308, 386
AluBI AGCT 2 cut(s) 160, 428
AluI AGCT 2 cut(s) 160, 428
AlwNI CAGNNNCTG 1 cut(s) 23
ApoI RAATTY 1 cut(s) 284
AsuC2I CCSGG 1 cut(s) 234
AsuHPI GGTGA 1 cut(s) 233
BcnI CCSGG 1 cut(s) 234
BfaI CTAG 1 cut(s) 197
Bme1390I CCNGG 1 cut(s) 234
BmiI GGNNCC 2 cut(s) 15, 231
BmrFI CCNGG 1 cut(s) 234
BmsI GCATC 2 cut(s) 37, 48
BpmI CTGGAG 1 cut(s) 209
BpuEI CTTGAG 1 cut(s) 488
BpuMI CCSGG 1 cut(s) 234
Bsc4I CCNNNNNNNGG 1 cut(s) 123
Bse1I ACTGG 1 cut(s) 214
BseGI GGATG 2 cut(s) 52, 132
BseLI CCNNNNNNNGG 1 cut(s) 123
BseMII CTCAG 1 cut(s) 85
BseNI ACTGG 1 cut(s) 214
BseRI GAGGAG 1 cut(s) 321
BsiSI CCGG 1 cut(s) 233
BslI CCNNNNNNNGG 1 cut(s) 123
BsmI GAATGC 1 cut(s) 328
Bsp1407I TGTACA 1 cut(s) 430
BspCNI CTCAG 1 cut(s) 84
BspLI GGNNCC 2 cut(s) 15, 231
BsrGI TGTACA 1 cut(s) 430
BsrI ACTGG 1 cut(s) 214
Bst4CI ACNGT 1 cut(s) 422
BstAUI TGTACA 1 cut(s) 430
BstDEI CTNAG 3 cut(s) 64, 71, 399
BstF5I GGATG 2 cut(s) 52, 132
BstSCI CCNGG 1 cut(s) 232
BtgZI GCGATG 1 cut(s) 390
BtsCI GGATG 2 cut(s) 52, 132
BtsIMutI CAGTG 1 cut(s) 144
CaiI CAGNNNCTG 1 cut(s) 23
Csp6I GTAC 2 cut(s) 267, 431
CviAII CATG 1 cut(s) 473
CviJI RGCY 2 cut(s) 160, 428
CviKI_1 RGCY 2 cut(s) 160, 428
CviQI GTAC 2 cut(s) 267, 431
DdeI CTNAG 3 cut(s) 64, 71, 399
Eco57I CTGAAG 1 cut(s) 368
EcoRI GAATTC 1 cut(s) 284
FaeI CATG 1 cut(s) 476
FaiI YATR 4 cut(s) 174, 339, 474, 479
FatI CATG 1 cut(s) 472
FokI GGATG 2 cut(s) 59, 139
FspBI CTAG 1 cut(s) 197
GsuI CTGGAG 1 cut(s) 209
HapII CCGG 1 cut(s) 233
Hin1II CATG 1 cut(s) 476
HincII GTYRAC 1 cut(s) 412
HindII GTYRAC 1 cut(s) 412
HinfI GANTC 4 cut(s) 20, 193, 366, 484
HpaII CCGG 1 cut(s) 233
HphI GGTGA 1 cut(s) 233
Hpy166II GTNNAC 3 cut(s) 28, 313, 412
Hpy188I TCNGA 2 cut(s) 283, 492
Hpy188III TCNNGA 3 cut(s) 188, 346, 501
Hpy8I GTNNAC 3 cut(s) 28, 313, 412
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 1 cut(s) 4
HpyCH4III ACNGT 1 cut(s) 422
HpyCH4IV ACGT 1 cut(s) 436
HpyCH4V TGCA 1 cut(s) 50
HpyF3I CTNAG 3 cut(s) 64, 71, 399
HpySE526I ACGT 1 cut(s) 436
Hsp92II CATG 1 cut(s) 476
LpnPI CCDG 6 cut(s) 30, 154, 173, 227, 246, 359
LweI GCATC 2 cut(s) 37, 48
MaeI CTAG 1 cut(s) 197
MaeII ACGT 1 cut(s) 436
MaeIII GTNAC 2 cut(s) 209, 221
MboII GAAGA 3 cut(s) 361, 361, 479
MluCI AATT 4 cut(s) 99, 149, 249, 284
MmeI TCCRAC 1 cut(s) 470
MnlI CCTC 4 cut(s) 37, 220, 342, 468
MseI TTAA 2 cut(s) 35, 98
MspI CCGG 1 cut(s) 233
MspR9I CCNGG 1 cut(s) 234
Mva1269I GAATGC 1 cut(s) 328
NciI CCSGG 1 cut(s) 234
NlaIII CATG 1 cut(s) 476
NlaIV GGNNCC 2 cut(s) 15, 231
NmuCI GTSAC 1 cut(s) 221
PctI GAATGC 1 cut(s) 328
PfeI GAWTC 4 cut(s) 20, 193, 366, 484
Psp1406I AACGTT 1 cut(s) 436
PspN4I GGNNCC 2 cut(s) 15, 231
PstNI CAGNNNCTG 1 cut(s) 23
RsaI GTAC 2 cut(s) 268, 432
RsaNI GTAC 2 cut(s) 267, 431
SaqAI TTAA 2 cut(s) 35, 98
ScrFI CCNGG 1 cut(s) 234
SetI ASST 5 cut(s) 162, 173, 187, 430, 439
SfaNI GCATC 2 cut(s) 37, 48
SmlI CTYRAG 1 cut(s) 467
SmoI CTYRAG 1 cut(s) 467
Sse9I AATT 4 cut(s) 99, 149, 249, 284
SspMI CTAG 1 cut(s) 197
StyD4I CCNGG 1 cut(s) 232
TaaI ACNGT 1 cut(s) 422
TaiI ACGT 1 cut(s) 439
TaqI TCGA 1 cut(s) 42
TasI AATT 4 cut(s) 99, 149, 249, 284
TatI WGTACW 2 cut(s) 266, 430
TfiI GAWTC 4 cut(s) 20, 193, 366, 484
Tru1I TTAA 2 cut(s) 35, 98
Tru9I TTAA 2 cut(s) 35, 98
TscAI CASTG 1 cut(s) 151
TseFI GTSAC 1 cut(s) 221
Tsp45I GTSAC 1 cut(s) 221
TspGWI ACGGA 1 cut(s) 330
TspRI CASTG 1 cut(s) 151
XapI RAATTY 1 cut(s) 284
XspI CTAG 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.