Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0002888

Physical Location & Seq

Genomic Coordinates Forward (+)

12255695 .. 12258781

Gene Structure 3087 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g09930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGGAAACAAGGTTTCTGGCTGCTTTACAACAATGCCTCAAGCTAGCACAGGTACCTGTGGTACTTCAGAGTTGGGACCGGATTGTAAAATGCCAAGCCAACCCGATGAGTACCCAGACGGAACAATTTACGAATACTCTGTCAAGGATGTTAAGGGAAAGGATGTCGATCTCAGCGTGTACAGGGGAAAGGTTGTGATGGTTGTTAATGTTGCTTCCCAATGTGGATTGACGGAGGAAAATTACACGGAGTTGAATCAACTATATCAAAAGTATAAAGATCAAGGCTTGGAGATTCTGGCATTTCCGTGTAACCAGTTTAACGCTCAGGAACCGGGAAGTAATGATCAGATTCAAGAGTTTGCCTGCACTCGTTTCAAAACAGCATTCCCAATTTTTAACAAGATTAAAGTAAACGGCATTAATACTGCTCCGTTGTACAAGTTCTTGAAGTTAGGCAAATGGGGATTCTTCGAAGACGATATCCAGTGGAACTTTGCTAAGTTCCTTGTCAACAAGCAAGGAAAACCTGTCGGTCGTTATTACCCATCAACTTCCCCCCTTAGCCTTCAGCATGACATAAACAGGCTTTTGGAAGCCTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0016209 GO:0016491 GO:0016684 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00480 ko00590 ko04918 map00480 map00590 map04918

Pfam Domains

Protein Families

GSHPx

Protein Analysis

202

Amino Acids

22.58

Weight (kDa)

5.9

Isoelectric Point (pI)

32.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Redoxin	PF08534	39 - 102	3.5e-06	Redoxin
GSHPx	PF00255	43 - 151	5.9e-43	Glutathione peroxidase
AhpC-TSA	PF00578	45 - 106	1.3e-07	AhpC/TSA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63460
fragaria_vesca	FvH4_5g02170 FvH4_5g02170 FvH4_5g02171
malus_domestica	MD06G1081400.v1.1 MD06G1081500.v1.1 MD06G1081600.v1.1 MD14G1103300.v1.1 MD14G1103400.v1.1
prunus_persica	Prupe.5G098500_v2.0.a1 Prupe.5G098600_v2.0.a1 Prupe.5G098600_v2.0.a1 Prupe.5G098700_v2.0.a1
pyrus_communis	pycom06g07840 pycom14g09920 pycom14g09930
rosa_chinensis	RchiOBHm_Chr6g0245721 RchiOBHm_Chr7g0197971 RchiOBHm_Chr7g0197981
rosa_laevigata	RLG00000003896 RLG00000003897
rosa_multiflora	Rmu_co8195742.1_g000001 Rmu_sc0001082.1_g000007 Rmu_sc0025270.1_g000001
rosa_roxburghii	Rroxscaffold_3G00258040 Rroxscaffold_3G00258050
rosa_rugosa	Rorug02G0237300 Rorug07G0045000
rosa_samantha	Rh7AG168400 Rh7BG171400 Rh7BG171500 Rh7CG177900 Rh7CG178000 Rh7CG467800 Rh7DG170500 Rh7DG170600
rosa_wichuraiana	Rw7G014710 Rw7G014720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	53
AccB1I	GGYRCC	1 cut(s)	53
AcuI	CTGAAG	2 cut(s)	51, 554
AfaI	GTAC	5 cut(s)	55, 64, 113, 182, 440
AgsI	TTSAA	4 cut(s)	256, 356, 379, 451
AluBI	AGCT	1 cut(s)	44
AluI	AGCT	1 cut(s)	44
ApeKI	GCWGC	1 cut(s)	21
ArsI	GACNNNNNNTTYG	2 cut(s)	126, 158
AseI	ATTAAT	1 cut(s)	423
Asp718I	GGTACC	1 cut(s)	53
AspS9I	GGNCC	1 cut(s)	77
AsuC2I	CCSGG	1 cut(s)	336
AsuII	TTCGAA	1 cut(s)	474
AsuNHI	GCTAGC	1 cut(s)	44
AvaII	GGWCC	1 cut(s)	77
BanI	GGYRCC	1 cut(s)	53
BauI	CACGAG	1 cut(s)	601
BbsI	GAAGAC	1 cut(s)	483
BbvI	GCAGC	1 cut(s)	8
BccI	CCATC	2 cut(s)	193, 556
BceAI	ACGGC	1 cut(s)	433
BclI	TGATCA	1 cut(s)	346
BcnI	CCSGG	1 cut(s)	336
BfaI	CTAG	1 cut(s)	45
BisI	GCNGC	1 cut(s)	22
BlsI	GCNGC	1 cut(s)	23
Bme1390I	CCNGG	1 cut(s)	336
Bme18I	GGWCC	1 cut(s)	77
BmgT120I	GGNCC	1 cut(s)	77
BmiI	GGNNCC	3 cut(s)	55, 78, 333
BmrFI	CCNGG	1 cut(s)	336
BmtI	GCTAGC	1 cut(s)	48
BpiI	GAAGAC	1 cut(s)	483
Bpu10I	CCTNAGC	2 cut(s)	327, 563
Bpu14I	TTCGAA	1 cut(s)	474
BpuEI	CTTGAG	1 cut(s)	24
BpuMI	CCSGG	1 cut(s)	336
BsaBI	GATNNNNATC	1 cut(s)	168
BsaWI	WCCGGW	1 cut(s)	79
Bse1I	ACTGG	2 cut(s)	316, 487
Bse8I	GATNNNNATC	1 cut(s)	168
BseGI	GGATG	2 cut(s)	154, 169
BseJI	GATNNNNATC	1 cut(s)	168
BseMII	CTCAG	2 cut(s)	187, 341
BseNI	ACTGG	2 cut(s)	316, 487
BseXI	GCAGC	1 cut(s)	8
BsgI	GTGCAG	1 cut(s)	352
Bsh1285I	CGRYCG	1 cut(s)	538
BshNI	GGYRCC	1 cut(s)	53
BsiEI	CGRYCG	1 cut(s)	538
BsiSI	CCGG	2 cut(s)	80, 335
BslFI	GGGAC	1 cut(s)	90
BsmFI	GGGAC	1 cut(s)	90
BsmI	GAATGC	1 cut(s)	386
Bsp119I	TTCGAA	1 cut(s)	474
Bsp1407I	TGTACA	2 cut(s)	180, 438
Bsp143I	GATC	3 cut(s)	169, 280, 346
BspCNI	CTCAG	2 cut(s)	186, 340
BspLI	GGNNCC	3 cut(s)	55, 78, 333
BspOI	GCTAGC	1 cut(s)	48
BspT104I	TTCGAA	1 cut(s)	474
BspT107I	GGYRCC	1 cut(s)	53
BsrGI	TGTACA	2 cut(s)	180, 438
BsrI	ACTGG	2 cut(s)	316, 487
BssMI	GATC	3 cut(s)	169, 280, 346
BssSI	CACGAG	1 cut(s)	601
Bst2BI	CACGAG	1 cut(s)	601
BstAUI	TGTACA	2 cut(s)	180, 438
BstBI	TTCGAA	1 cut(s)	474
BstC8I	GCNNGC	2 cut(s)	46, 367
BstDEI	CTNAG	4 cut(s)	173, 327, 501, 563
BstF5I	GGATG	2 cut(s)	154, 169
BstKTI	GATC	3 cut(s)	172, 283, 349
BstMBI	GATC	3 cut(s)	169, 280, 346
BstMCI	CGRYCG	1 cut(s)	538
BstSCI	CCNGG	1 cut(s)	334
BstV1I	GCAGC	1 cut(s)	8
BstV2I	GAAGAC	1 cut(s)	483
BtsCI	GGATG	2 cut(s)	154, 169
BtsIMutI	CAGTG	1 cut(s)	494
Cac8I	GCNNGC	2 cut(s)	46, 367
Cfr13I	GGNCC	1 cut(s)	77
Csp6I	GTAC	5 cut(s)	54, 63, 112, 181, 439
CviAII	CATG	1 cut(s)	575
CviJI	RGCY	7 cut(s)	21, 44, 99, 288, 567, 589, 599
CviKI_1	RGCY	7 cut(s)	21, 44, 99, 288, 567, 589, 599
CviQI	GTAC	5 cut(s)	54, 63, 112, 181, 439
DdeI	CTNAG	4 cut(s)	173, 327, 501, 563
DpnI	GATC	3 cut(s)	171, 282, 348
DpnII	GATC	3 cut(s)	169, 280, 346
Eco32I	GATATC	1 cut(s)	484
Eco47I	GGWCC	1 cut(s)	77
Eco57I	CTGAAG	2 cut(s)	51, 554
EcoRV	GATATC	1 cut(s)	484
FaeI	CATG	1 cut(s)	578
FaiI	YATR	4 cut(s)	265, 276, 576, 581
FaqI	GGGAC	1 cut(s)	90
FatI	CATG	1 cut(s)	574
FbaI	TGATCA	1 cut(s)	346
Fnu4HI	GCNGC	1 cut(s)	22
FokI	GGATG	2 cut(s)	161, 176
Fsp4HI	GCNGC	1 cut(s)	22
FspBI	CTAG	1 cut(s)	45
GluI	GCNGC	1 cut(s)	22
HapII	CCGG	2 cut(s)	80, 335
Hin1II	CATG	1 cut(s)	578
HincII	GTYRAC	1 cut(s)	514
HindII	GTYRAC	1 cut(s)	514
HinfI	GANTC	4 cut(s)	256, 295, 352, 468
HpaII	CCGG	2 cut(s)	80, 335
Hpy166II	GTNNAC	3 cut(s)	181, 415, 514
Hpy188I	TCNGA	2 cut(s)	70, 351
Hpy188III	TCNNGA	4 cut(s)	329, 356, 448, 603
Hpy8I	GTNNAC	3 cut(s)	181, 415, 514
HpyAV	CCTTC	1 cut(s)	578
HpyCH4V	TGCA	1 cut(s)	369
HpyF3I	CTNAG	4 cut(s)	173, 327, 501, 563
Hsp92II	CATG	1 cut(s)	578
KpnI	GGTACC	1 cut(s)	57
Ksp22I	TGATCA	1 cut(s)	346
Kzo9I	GATC	3 cut(s)	169, 280, 346
LmnI	GCTCC	1 cut(s)	436
Lsp1109I	GCAGC	1 cut(s)	8
MaeI	CTAG	1 cut(s)	45
MaeIII	GTNAC	1 cut(s)	311
MalI	GATC	3 cut(s)	171, 282, 348
MboI	GATC	3 cut(s)	169, 280, 346
MboII	GAAGA	2 cut(s)	463, 488
MluCI	AATT	3 cut(s)	126, 241, 393
MnlI	CCTC	2 cut(s)	48, 229
MseI	TTAA	6 cut(s)	153, 207, 321, 399, 408, 423
MslI	CAYNNNNRTG	1 cut(s)	307
MspI	CCGG	2 cut(s)	80, 335
MspR9I	CCNGG	1 cut(s)	336
Mva1269I	GAATGC	1 cut(s)	386
NciI	CCSGG	1 cut(s)	336
NdeII	GATC	3 cut(s)	169, 280, 346
NheI	GCTAGC	1 cut(s)	44
NlaIII	CATG	1 cut(s)	578
NlaIV	GGNNCC	3 cut(s)	55, 78, 333
NspV	TTCGAA	1 cut(s)	474
PcsI	WCGNNNNNNNCGW	1 cut(s)	174
PctI	GAATGC	1 cut(s)	386
PfeI	GAWTC	4 cut(s)	256, 295, 352, 468
PkrI	GCNGC	1 cut(s)	23
PshBI	ATTAAT	1 cut(s)	423
PspN4I	GGNNCC	3 cut(s)	55, 78, 333
PspPI	GGNCC	1 cut(s)	77
RsaI	GTAC	5 cut(s)	55, 64, 113, 182, 440
RsaNI	GTAC	5 cut(s)	54, 63, 112, 181, 439
RseI	CAYNNNNRTG	1 cut(s)	307
SaqAI	TTAA	6 cut(s)	153, 207, 321, 399, 408, 423
SatI	GCNGC	1 cut(s)	22
Sau3AI	GATC	3 cut(s)	169, 280, 346
Sau96I	GGNCC	1 cut(s)	77
ScrFI	CCNGG	1 cut(s)	336
SetI	ASST	6 cut(s)	15, 46, 55, 59, 195, 532
SfuI	TTCGAA	1 cut(s)	474
SinI	GGWCC	1 cut(s)	77
SmiMI	CAYNNNNRTG	1 cut(s)	307
SmlI	CTYRAG	1 cut(s)	39
SmoI	CTYRAG	1 cut(s)	39
Sse9I	AATT	3 cut(s)	126, 241, 393
SspMI	CTAG	1 cut(s)	45
StyD4I	CCNGG	1 cut(s)	334
TaqI	TCGA	2 cut(s)	168, 474
TaqII	GACCGA	1 cut(s)	524
TasI	AATT	3 cut(s)	126, 241, 393
TatI	WGTACW	2 cut(s)	180, 438
TfiI	GAWTC	4 cut(s)	256, 295, 352, 468
Tru1I	TTAA	6 cut(s)	153, 207, 321, 399, 408, 423
Tru9I	TTAA	6 cut(s)	153, 207, 321, 399, 408, 423
TscAI	CASTG	1 cut(s)	494
TseI	GCWGC	1 cut(s)	21
TspGWI	ACGGA	5 cut(s)	135, 248, 263, 297, 423
TspRI	CASTG	1 cut(s)	494
VpaK11BI	GGWCC	1 cut(s)	77
VspI	ATTAAT	1 cut(s)	423
XspI	CTAG	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.