Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0002888

Physical Location & Seq

Genomic Coordinates Forward (+)

15971854 .. 15974104

Gene Structure 2251 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1103300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGCTAGTCTTAGCCCACCCCCTGGACCATTTTATGACTTCACTGTCAAGGATGTTAAGGGAAATGATGTCGATCTTAGCCTTTACAAGGGAAAAATTCTGCTGGTCATCAATGTTGCTTCCAAATGTGGACTGACCAACTCAAATTACGATGAGCTGAATGAACTGTATCAAAAGTATAAAGATCAAGGCTTTGAGATTCTGGCATTTCCGTGCAACCAGTTTGGTGATCAGGAACCTGGAAGTAACAAAGAGATTGAAGATTTTGTCTGCACTCGGTTCAAATCGGAGTTTCCCATTTTTGACAAGATTGAAGTAAACGGAGATAATACTGCTCCAGTGTACAAGTTCTTGAAGGAAGGCATGTGGGGATTCTTTGGAGACGATATTCAGTGGAACTTTACCAAGTTTCTAGTTGACAAAGAAGGAGAAGCGTCTCACCGCTATTATCCAACCACACCCCCCCTTAGCATCGAGCGTGACATCAAGACGCTGTTGGGAATCGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0016209 GO:0016491 GO:0016684 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00480 ko00590 ko04918 map00480 map00590 map04918

Pfam Domains

Protein Families

GSHPx

Protein Analysis

170

Amino Acids

19.24

Weight (kDa)

4.69

Isoelectric Point (pI)

34.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GSHPx	PF00255	11 - 119	2e-44	Glutathione peroxidase
AhpC-TSA	PF00578	11 - 73	4.1e-08	AhpC/TSA family
Redoxin	PF08534	12 - 70	3.4e-06	Redoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63460
fragaria_vesca	FvH4_5g02170 FvH4_5g02170 FvH4_5g02171
malus_domestica	MD06G1081400.v1.1 MD06G1081500.v1.1 MD06G1081600.v1.1 MD14G1103300.v1.1 MD14G1103400.v1.1
prunus_persica	Prupe.5G098500_v2.0.a1 Prupe.5G098600_v2.0.a1 Prupe.5G098600_v2.0.a1 Prupe.5G098700_v2.0.a1
pyrus_communis	pycom06g07840 pycom14g09920 pycom14g09930
rosa_chinensis	RchiOBHm_Chr6g0245721 RchiOBHm_Chr7g0197971 RchiOBHm_Chr7g0197981
rosa_laevigata	RLG00000003896 RLG00000003897
rosa_multiflora	Rmu_co8195742.1_g000001 Rmu_sc0001082.1_g000007 Rmu_sc0025270.1_g000001
rosa_roxburghii	Rroxscaffold_3G00258040 Rroxscaffold_3G00258050
rosa_rugosa	Rorug02G0237300 Rorug07G0045000
rosa_samantha	Rh7AG168400 Rh7BG171400 Rh7BG171500 Rh7CG177900 Rh7CG178000 Rh7CG467800 Rh7DG170500 Rh7DG170600
rosa_wichuraiana	Rw7G014710 Rw7G014720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	44
AccB7I	CCANNNNNTGG	1 cut(s)	23
AccII	CGCG	1 cut(s)	506
AciI	CCGC	1 cut(s)	442
AcsI	RAATTY	1 cut(s)	96
AfaI	GTAC	1 cut(s)	344
AfiI	CCNNNNNNNGG	2 cut(s)	23, 88
AgsI	TTSAA	4 cut(s)	260, 283, 314, 355
AjnI	CCWGG	2 cut(s)	22, 238
AluBI	AGCT	1 cut(s)	157
AluI	AGCT	1 cut(s)	157
Alw26I	GTCTC	2 cut(s)	375, 441
ApoI	RAATTY	1 cut(s)	96
AspS9I	GGNCC	1 cut(s)	26
AsuHPI	GGTGA	2 cut(s)	239, 431
AvaII	GGWCC	1 cut(s)	26
BciT130I	CCWGG	2 cut(s)	24, 240
BclI	TGATCA	1 cut(s)	229
BcoDI	GTCTC	2 cut(s)	375, 441
BfaI	CTAG	2 cut(s)	6, 413
Bme1390I	CCNGG	2 cut(s)	24, 240
Bme18I	GGWCC	1 cut(s)	26
BmgT120I	GGNCC	1 cut(s)	26
BmiI	GGNNCC	1 cut(s)	237
BmrFI	CCNGG	2 cut(s)	24, 240
BmsI	GCATC	1 cut(s)	480
BpmI	CTGGAG	1 cut(s)	321
Bpu10I	CCTNAGC	1 cut(s)	467
BsaBI	GATNNNNATC	1 cut(s)	72
BsaJI	CCNNGG	1 cut(s)	22
Bsc4I	CCNNNNNNNGG	2 cut(s)	23, 88
Bse1I	ACTGG	2 cut(s)	220, 338
Bse8I	GATNNNNATC	1 cut(s)	72
BseBI	CCWGG	2 cut(s)	24, 240
BseDI	CCNNGG	1 cut(s)	22
BseGI	GGATG	1 cut(s)	58
BseJI	GATNNNNATC	1 cut(s)	72
BseLI	CCNNNNNNNGG	2 cut(s)	23, 88
BseNI	ACTGG	2 cut(s)	220, 338
BsgI	GTGCAG	1 cut(s)	256
Bsh1236I	CGCG	1 cut(s)	506
BslI	CCNNNNNNNGG	2 cut(s)	23, 88
BsmAI	GTCTC	2 cut(s)	375, 441
BsmBI	CGTCTC	2 cut(s)	375, 441
Bsp1407I	TGTACA	1 cut(s)	342
Bsp143I	GATC	3 cut(s)	73, 184, 229
BspACI	CCGC	1 cut(s)	442
BspFNI	CGCG	1 cut(s)	506
BspLI	GGNNCC	1 cut(s)	237
BsrGI	TGTACA	1 cut(s)	342
BsrI	ACTGG	2 cut(s)	220, 338
BssECI	CCNNGG	1 cut(s)	22
BssMI	GATC	3 cut(s)	73, 184, 229
Bst2UI	CCWGG	2 cut(s)	24, 240
Bst4CI	ACNGT	2 cut(s)	46, 168
BstAUI	TGTACA	1 cut(s)	342
BstDEI	CTNAG	3 cut(s)	11, 77, 467
BstENI	CCTNNNNNAGG	1 cut(s)	86
BstF5I	GGATG	1 cut(s)	58
BstFNI	CGCG	1 cut(s)	506
BstKTI	GATC	3 cut(s)	76, 187, 232
BstMAI	GTCTC	2 cut(s)	375, 441
BstMBI	GATC	3 cut(s)	73, 184, 229
BstNI	CCWGG	2 cut(s)	24, 240
BstNSI	RCATGY	1 cut(s)	367
BstSCI	CCNGG	2 cut(s)	22, 238
BstUI	CGCG	1 cut(s)	506
BtsCI	GGATG	1 cut(s)	58
BtsIMutI	CAGTG	3 cut(s)	42, 345, 398
Cfr13I	GGNCC	1 cut(s)	26
CseI	GACGC	2 cut(s)	423, 499
Csp6I	GTAC	1 cut(s)	343
CviAII	CATG	1 cut(s)	364
CviJI	RGCY	5 cut(s)	5, 15, 81, 157, 192
CviKI_1	RGCY	5 cut(s)	5, 15, 81, 157, 192
CviQI	GTAC	1 cut(s)	343
DdeI	CTNAG	3 cut(s)	11, 77, 467
DpnI	GATC	3 cut(s)	75, 186, 231
DpnII	GATC	3 cut(s)	73, 184, 229
DrdI	GACNNNNNNGTC	1 cut(s)	44
DseDI	GACNNNNNNGTC	1 cut(s)	44
Eco47I	GGWCC	1 cut(s)	26
EcoNI	CCTNNNNNAGG	1 cut(s)	86
EcoRII	CCWGG	2 cut(s)	22, 238
Esp3I	CGTCTC	2 cut(s)	375, 441
FaeI	CATG	1 cut(s)	367
FaiI	YATR	3 cut(s)	36, 180, 365
FatI	CATG	1 cut(s)	363
FbaI	TGATCA	1 cut(s)	229
FokI	GGATG	1 cut(s)	65
FspBI	CTAG	2 cut(s)	6, 413
GsuI	CTGGAG	1 cut(s)	321
HgaI	GACGC	2 cut(s)	423, 499
Hin1II	CATG	1 cut(s)	367
HincII	GTYRAC	1 cut(s)	418
HindII	GTYRAC	1 cut(s)	418
HinfI	GANTC	3 cut(s)	199, 372, 501
HphI	GGTGA	2 cut(s)	239, 431
Hpy166II	GTNNAC	4 cut(s)	131, 319, 343, 418
Hpy188I	TCNGA	1 cut(s)	289
Hpy188III	TCNNGA	3 cut(s)	233, 352, 487
Hpy8I	GTNNAC	4 cut(s)	131, 319, 343, 418
HpyAV	CCTTC	3 cut(s)	349, 353, 419
HpyCH4III	ACNGT	2 cut(s)	46, 168
HpyCH4V	TGCA	2 cut(s)	216, 273
HpyF3I	CTNAG	3 cut(s)	11, 77, 467
Hsp92II	CATG	1 cut(s)	367
Ksp22I	TGATCA	1 cut(s)	229
Kzo9I	GATC	3 cut(s)	73, 184, 229
LmnI	GCTCC	1 cut(s)	340
LpnPI	CCDG	9 cut(s)	9, 36, 89, 188, 218, 225, 233, 252, 351
LweI	GCATC	1 cut(s)	480
MaeI	CTAG	2 cut(s)	6, 413
MaeIII	GTNAC	2 cut(s)	245, 479
MalI	GATC	3 cut(s)	75, 186, 231
MboI	GATC	3 cut(s)	73, 184, 229
MboII	GAAGA	1 cut(s)	272
MluCI	AATT	2 cut(s)	96, 145
MmeI	TCCRAC	1 cut(s)	476
MseI	TTAA	1 cut(s)	57
MslI	CAYNNNNRTG	1 cut(s)	211
MspR9I	CCNGG	2 cut(s)	24, 240
MvaI	CCWGG	2 cut(s)	24, 240
MvnI	CGCG	1 cut(s)	506
NdeII	GATC	3 cut(s)	73, 184, 229
NlaIII	CATG	1 cut(s)	367
NlaIV	GGNNCC	1 cut(s)	237
NmuCI	GTSAC	1 cut(s)	479
NspI	RCATGY	1 cut(s)	367
PfeI	GAWTC	3 cut(s)	199, 372, 501
PflMI	CCANNNNNTGG	1 cut(s)	23
Psp6I	CCWGG	2 cut(s)	22, 238
PspGI	CCWGG	2 cut(s)	22, 238
PspN4I	GGNNCC	1 cut(s)	237
PspPI	GGNCC	1 cut(s)	26
RsaI	GTAC	1 cut(s)	344
RsaNI	GTAC	1 cut(s)	343
RseI	CAYNNNNRTG	1 cut(s)	211
SaqAI	TTAA	1 cut(s)	57
Sau3AI	GATC	3 cut(s)	73, 184, 229
Sau96I	GGNCC	1 cut(s)	26
ScrFI	CCNGG	2 cut(s)	24, 240
SetI	ASST	2 cut(s)	159, 241
SfaNI	GCATC	1 cut(s)	480
SinI	GGWCC	1 cut(s)	26
SmiMI	CAYNNNNRTG	1 cut(s)	211
Sse9I	AATT	2 cut(s)	96, 145
SsiI	CCGC	1 cut(s)	442
SspMI	CTAG	2 cut(s)	6, 413
StyD4I	CCNGG	2 cut(s)	22, 238
TaaI	ACNGT	2 cut(s)	46, 168
TaqI	TCGA	2 cut(s)	72, 474
TasI	AATT	2 cut(s)	96, 145
TatI	WGTACW	1 cut(s)	342
TfiI	GAWTC	3 cut(s)	199, 372, 501
Tru1I	TTAA	1 cut(s)	57
Tru9I	TTAA	1 cut(s)	57
TscAI	CASTG	3 cut(s)	49, 345, 398
TseFI	GTSAC	1 cut(s)	479
Tsp45I	GTSAC	1 cut(s)	479
TspDTI	ATGAA	1 cut(s)	177
TspGWI	ACGGA	2 cut(s)	201, 336
TspRI	CASTG	3 cut(s)	49, 345, 398
Van91I	CCANNNNNTGG	1 cut(s)	23
VpaK11BI	GGWCC	1 cut(s)	26
XagI	CCTNNNNNAGG	1 cut(s)	86
XapI	RAATTY	1 cut(s)	96
XceI	RCATGY	1 cut(s)	367
XspI	CTAG	2 cut(s)	6, 413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.