FvH4_5g02171

Glutathione peroxidase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
1353085 .. 1355100
2016 bp
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UTR
Exon/CDS
Intron
FvH4_5g02171.t1

Sequence Viewer

Length: 507 bp
ATGGCAACCTCTGAGGCCACAAAGACGATCTACGACTTCACTGTCAAGGATGCTAAGGGGAATGATGTGGATCTTAGCGTCTACAAGGGAAAAGTTCTGCTCATTGTCAATGTTGCTTCCAAATGTGGACTGACAAACTCAAACTACACAGAGCTGAATCAACTATATGAAAAGTATAAAGATCAAGGATTTGAGATACTGGCATTTCCTTGCAATCAGTTTGCTGGACAGGAACCGGGAAGTAATGAAGAGATTGAAGAGTTTGTCTGCACTCGTTTCAAATCAGAATTTCCGATATTTGACAAGATTGAAGTAAATGGTGATAACTCTGCTCCACTGTACAAATTCTTGAAGTCGGGCAACTGGGGTTTCTTTAAAGACGATATTCAGTGGAACTTTTCCAAATTTCTAGTCGACAGAGATGGGAAAGTTGCTGATCGCTATTATCCTACAACTGCCACCCTTAGTCTTGAGCATGGCATAAAGAAGCTGTTAGGAGTCTCATGA

Protein Analysis

169

Amino Acids

19.02

Weight (kDa)

5.11

Isoelectric Point (pI)

16.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Redoxin PF08534 8 - 69 1.6e-07 Redoxin
AhpC-TSA PF00578 9 - 73 5.7e-09 AhpC/TSA family
GSHPx PF00255 10 - 118 3.4e-45 Glutathione peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 41
AccI GTMKAC 2 cut(s) 81, 414
AclWI GGATC 1 cut(s) 78
AcsI RAATTY 3 cut(s) 287, 344, 404
AfaI GTAC 1 cut(s) 341
AgsI TTSAA 4 cut(s) 257, 280, 311, 352
AluBI AGCT 2 cut(s) 154, 490
AluI AGCT 2 cut(s) 154, 490
AlwI GGATC 1 cut(s) 78
AoxI GGCC 1 cut(s) 15
ApoI RAATTY 3 cut(s) 287, 344, 404
ArsI GACNNNNNNTTYG 2 cut(s) 396, 428
AsuC2I CCSGG 1 cut(s) 237
AsuHPI GGTGA 1 cut(s) 332
BccI CCATC 1 cut(s) 416
BcnI CCSGG 1 cut(s) 237
BfaI CTAG 1 cut(s) 410
Bme1390I CCNGG 1 cut(s) 237
BmiI GGNNCC 1 cut(s) 234
BmrFI CCNGG 1 cut(s) 237
BmrI ACTGGG 1 cut(s) 373
BmsI GCATC 1 cut(s) 40
BmuI ACTGGG 1 cut(s) 373
Bpu10I CCTNAGC 1 cut(s) 54
BpuEI CTTGAG 1 cut(s) 491
BpuMI CCSGG 1 cut(s) 237
BsaBI GATNNNNATC 1 cut(s) 69
Bse1I ACTGG 2 cut(s) 204, 368
Bse8I GATNNNNATC 1 cut(s) 69
BseGI GGATG 1 cut(s) 55
BseJI GATNNNNATC 1 cut(s) 69
BseNI ACTGG 2 cut(s) 204, 368
BsgI GTGCAG 1 cut(s) 253
BshFI GGCC 1 cut(s) 17
BsiSI CCGG 1 cut(s) 236
BsnI GGCC 1 cut(s) 17
Bsp1407I TGTACA 1 cut(s) 339
Bsp143I GATC 4 cut(s) 27, 70, 181, 436
BspANI GGCC 1 cut(s) 17
BspCNI CTCAG 1 cut(s) 4
BspHI TCATGA 1 cut(s) 503
BspLI GGNNCC 1 cut(s) 234
BspPI GGATC 1 cut(s) 78
BsrGI TGTACA 1 cut(s) 339
BsrI ACTGG 2 cut(s) 204, 368
BssMI GATC 4 cut(s) 27, 70, 181, 436
Bst4CI ACNGT 2 cut(s) 43, 339
Bst6I CTCTTC 2 cut(s) 243, 252
BstAUI TGTACA 1 cut(s) 339
BstDEI CTNAG 4 cut(s) 12, 54, 74, 464
BstF5I GGATG 1 cut(s) 55
BstKTI GATC 4 cut(s) 30, 73, 184, 439
BstMBI GATC 4 cut(s) 27, 70, 181, 436
BstSCI CCNGG 1 cut(s) 235
BstX2I RGATCY 1 cut(s) 70
BstYI RGATCY 1 cut(s) 70
BsuRI GGCC 1 cut(s) 17
BtsCI GGATG 1 cut(s) 55
BtsIMutI CAGTG 3 cut(s) 39, 335, 395
CciI TCATGA 1 cut(s) 503
CseI GACGC 1 cut(s) 67
Csp6I GTAC 1 cut(s) 340
CviAII CATG 2 cut(s) 476, 504
CviJI RGCY 3 cut(s) 17, 154, 490
CviKI_1 RGCY 3 cut(s) 17, 154, 490
CviQI GTAC 1 cut(s) 340
DdeI CTNAG 4 cut(s) 12, 54, 74, 464
DpnI GATC 4 cut(s) 29, 72, 183, 438
DpnII GATC 4 cut(s) 27, 70, 181, 436
DraI TTTAAA 1 cut(s) 376
DrdI GACNNNNNNGTC 1 cut(s) 41
DseDI GACNNNNNNGTC 1 cut(s) 41
Eam1104I CTCTTC 2 cut(s) 243, 252
EarI CTCTTC 2 cut(s) 243, 252
FaeI CATG 2 cut(s) 479, 507
FaiI YATR 6 cut(s) 166, 168, 177, 477, 482, 505
FatI CATG 2 cut(s) 475, 503
FblI GTMKAC 2 cut(s) 81, 414
FokI GGATG 1 cut(s) 62
FspBI CTAG 1 cut(s) 410
HaeIII GGCC 1 cut(s) 17
HapII CCGG 1 cut(s) 236
HgaI GACGC 1 cut(s) 67
Hin1II CATG 2 cut(s) 479, 507
HincII GTYRAC 1 cut(s) 415
HindII GTYRAC 1 cut(s) 415
HinfI GANTC 2 cut(s) 157, 498
HpaII CCGG 1 cut(s) 236
HphI GGTGA 1 cut(s) 332
Hpy166II GTNNAC 3 cut(s) 82, 128, 415
Hpy188I TCNGA 3 cut(s) 13, 286, 294
Hpy188III TCNNGA 3 cut(s) 349, 470, 504
Hpy8I GTNNAC 3 cut(s) 82, 128, 415
HpyCH4III ACNGT 2 cut(s) 43, 339
HpyCH4V TGCA 2 cut(s) 213, 270
HpyF3I CTNAG 4 cut(s) 12, 54, 74, 464
Hsp92II CATG 2 cut(s) 479, 507
Kzo9I GATC 4 cut(s) 27, 70, 181, 436
LmnI GCTCC 1 cut(s) 337
LpnPI CCDG 5 cut(s) 185, 210, 215, 249, 349
LweI GCATC 1 cut(s) 40
MaeI CTAG 1 cut(s) 410
MalI GATC 4 cut(s) 29, 72, 183, 438
MboI GATC 4 cut(s) 27, 70, 181, 436
MboII GAAGA 2 cut(s) 260, 269
MflI RGATCY 1 cut(s) 70
MluCI AATT 3 cut(s) 287, 344, 404
MlyI GAGTC 1 cut(s) 507
MnlI CCTC 2 cut(s) 7, 19
MseI TTAA 1 cut(s) 375
MspI CCGG 1 cut(s) 236
MspR9I CCNGG 1 cut(s) 237
NciI CCSGG 1 cut(s) 237
NdeII GATC 4 cut(s) 27, 70, 181, 436
NlaIII CATG 2 cut(s) 479, 507
NlaIV GGNNCC 1 cut(s) 234
PagI TCATGA 1 cut(s) 503
PfeI GAWTC 1 cut(s) 157
PleI GAGTC 1 cut(s) 506
PpsI GAGTC 1 cut(s) 506
PspN4I GGNNCC 1 cut(s) 234
PsuI RGATCY 1 cut(s) 70
RsaI GTAC 1 cut(s) 341
RsaNI GTAC 1 cut(s) 340
SalI GTCGAC 1 cut(s) 413
SaqAI TTAA 1 cut(s) 375
Sau3AI GATC 4 cut(s) 27, 70, 181, 436
SchI GAGTC 1 cut(s) 507
ScrFI CCNGG 1 cut(s) 237
SetI ASST 3 cut(s) 11, 156, 492
SfaNI GCATC 1 cut(s) 40
SmlI CTYRAG 1 cut(s) 470
SmoI CTYRAG 1 cut(s) 470
Sse9I AATT 3 cut(s) 287, 344, 404
SspMI CTAG 1 cut(s) 410
StyD4I CCNGG 1 cut(s) 235
TaaI ACNGT 2 cut(s) 43, 339
TaqI TCGA 1 cut(s) 414
TasI AATT 3 cut(s) 287, 344, 404
TatI WGTACW 1 cut(s) 339
TfiI GAWTC 1 cut(s) 157
Tru1I TTAA 1 cut(s) 375
Tru9I TTAA 1 cut(s) 375
TscAI CASTG 3 cut(s) 46, 342, 395
TspDTI ATGAA 2 cut(s) 183, 261
TspRI CASTG 3 cut(s) 46, 342, 395
XapI RAATTY 3 cut(s) 287, 344, 404
XmiI GTMKAC 2 cut(s) 81, 414
XspI CTAG 1 cut(s) 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.