pycom06g07840

Glutathione peroxidase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Forward (+)
12794650 .. 12796583
1934 bp
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UTR
Exon/CDS
Intron
pycom06g07840.2

Sequence Viewer

Length: 660 bp
ATGGCAAGTCCTCGCCCAGCCACTGGATCATTTTATGACTTTACTGTCAAGGATGTTAAGGGAAATGATGTCGATCTTAGCATTTACAAGGGAAAAGTTCTGCTGGTCATCAATGTTGCTTCCAAATGCGGACTGACCAACTCAAATTACGATGAGCTGAATGAACTGTATCGAAAGTATAAAGATCAAGGCTTTGAAATTCTGGCATTTCCGTGCAACCAGTTTGGTAGCCAGGAACCAGGAAGTAACAAGGAGATTGAAGATTTTGTCTGCACTCGTTTCAAATCGGAGTTTCCCATTTTTGACAAGATTGAAGTAAACGGAGATAATACTGCTCCAGTATACAAGTTCTTGAAGGAAGGGAAGTGGGGATTCTTTGGAGACGATATTCAGTGGAACTTTACCAAGTTTCTAGTTGACAAAGAAGGCAAAGCGTCTCACCGCTATTACCCAACCACTCCCCCCCTTAGCATCGAGGTCTGTTTCTCGAATGTAATCATGTTATGCTGCCTCTGTTGTTTACTCATGACATCAAGACGCTGTTGGGAGTCGCATAAGTTGCTGAGATGTGAAGATTTCAACATATGCTTGCCTTTTGTGTATCAAACTGGAATAAAAAGTTCAAGCTTGCTTTTGTGTATGTTTATCATATCAGCGTGA

Protein Analysis

220

Amino Acids

25.04

Weight (kDa)

6.16

Isoelectric Point (pI)

42.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 44
AccB7I CCANNNNNTGG 1 cut(s) 23
AccI GTMKAC 1 cut(s) 342
AciI CCGC 2 cut(s) 129, 442
AclWI GGATC 1 cut(s) 34
AcsI RAATTY 1 cut(s) 198
AfiI CCNNNNNNNGG 1 cut(s) 23
AgsI TTSAA 7 cut(s) 197, 260, 283, 314, 355, 580, 624
AjnI CCWGG 2 cut(s) 231, 238
AluBI AGCT 2 cut(s) 157, 627
AluI AGCT 2 cut(s) 157, 627
Alw26I GTCTC 2 cut(s) 375, 441
AlwI GGATC 1 cut(s) 34
AlwNI CAGNNNCTG 1 cut(s) 23
ApeKI GCWGC 1 cut(s) 507
ApoI RAATTY 1 cut(s) 198
AsuHPI GGTGA 1 cut(s) 431
BbvI GCAGC 1 cut(s) 494
BciT130I CCWGG 2 cut(s) 233, 240
BcoDI GTCTC 2 cut(s) 375, 441
BfaI CTAG 1 cut(s) 413
BisI GCNGC 1 cut(s) 508
BlsI GCNGC 1 cut(s) 509
Bme1390I CCNGG 2 cut(s) 233, 240
BmiI GGNNCC 1 cut(s) 237
BmrFI CCNGG 2 cut(s) 233, 240
BmsI GCATC 1 cut(s) 480
BpmI CTGGAG 1 cut(s) 321
Bpu10I CCTNAGC 1 cut(s) 467
BsaBI GATNNNNATC 1 cut(s) 72
Bsc4I CCNNNNNNNGG 1 cut(s) 23
Bse1I ACTGG 4 cut(s) 28, 220, 338, 613
Bse8I GATNNNNATC 1 cut(s) 72
BseBI CCWGG 2 cut(s) 233, 240
BseGI GGATG 1 cut(s) 58
BseJI GATNNNNATC 1 cut(s) 72
BseLI CCNNNNNNNGG 1 cut(s) 23
BseMII CTCAG 1 cut(s) 554
BseNI ACTGG 4 cut(s) 28, 220, 338, 613
BseXI GCAGC 1 cut(s) 494
BseYI CCCAGC 1 cut(s) 16
BsgI GTGCAG 1 cut(s) 256
BslI CCNNNNNNNGG 1 cut(s) 23
BsmAI GTCTC 2 cut(s) 375, 441
BsmBI CGTCTC 2 cut(s) 375, 441
Bsp143I GATC 3 cut(s) 26, 73, 184
BspACI CCGC 2 cut(s) 129, 442
BspCNI CTCAG 1 cut(s) 555
BspHI TCATGA 1 cut(s) 525
BspLI GGNNCC 1 cut(s) 237
BspPI GGATC 1 cut(s) 34
BsrI ACTGG 4 cut(s) 28, 220, 338, 613
BssMI GATC 3 cut(s) 26, 73, 184
BssNAI GTATAC 1 cut(s) 343
Bst1107I GTATAC 1 cut(s) 343
Bst2UI CCWGG 2 cut(s) 233, 240
Bst4CI ACNGT 2 cut(s) 46, 168
BstAPI GCANNNNNTGC 1 cut(s) 559
BstC8I GCNNGC 2 cut(s) 590, 629
BstDEI CTNAG 3 cut(s) 77, 467, 563
BstF5I GGATG 1 cut(s) 58
BstKTI GATC 3 cut(s) 29, 76, 187
BstMAI GTCTC 2 cut(s) 375, 441
BstMBI GATC 3 cut(s) 26, 73, 184
BstMWI GCNNNNNNNGC 1 cut(s) 559
BstNI CCWGG 2 cut(s) 233, 240
BstSCI CCNGG 2 cut(s) 231, 238
BstV1I GCAGC 1 cut(s) 494
BstZ17I GTATAC 1 cut(s) 343
BtsCI GGATG 1 cut(s) 58
BtsIMutI CAGTG 2 cut(s) 21, 398
Cac8I GCNNGC 2 cut(s) 590, 629
CaiI CAGNNNCTG 1 cut(s) 23
CciI TCATGA 1 cut(s) 525
CseI GACGC 2 cut(s) 423, 546
CviAII CATG 2 cut(s) 499, 526
CviJI RGCY 5 cut(s) 20, 157, 192, 231, 627
CviKI_1 RGCY 5 cut(s) 20, 157, 192, 231, 627
DdeI CTNAG 3 cut(s) 77, 467, 563
DpnI GATC 3 cut(s) 28, 75, 186
DpnII GATC 3 cut(s) 26, 73, 184
DrdI GACNNNNNNGTC 1 cut(s) 44
DseDI GACNNNNNNGTC 1 cut(s) 44
EcoRII CCWGG 2 cut(s) 231, 238
Esp3I CGTCTC 2 cut(s) 375, 441
FaeI CATG 2 cut(s) 502, 529
FatI CATG 2 cut(s) 498, 525
FauNDI CATATG 1 cut(s) 584
FblI GTMKAC 1 cut(s) 342
Fnu4HI GCNGC 1 cut(s) 508
FokI GGATG 1 cut(s) 65
Fsp4HI GCNGC 1 cut(s) 508
FspBI CTAG 1 cut(s) 413
GluI GCNGC 1 cut(s) 508
GsaI CCCAGC 1 cut(s) 20
GsuI CTGGAG 1 cut(s) 321
HgaI GACGC 2 cut(s) 423, 546
Hin1II CATG 2 cut(s) 502, 529
HincII GTYRAC 1 cut(s) 418
HindII GTYRAC 1 cut(s) 418
HindIII AAGCTT 1 cut(s) 625
HinfI GANTC 2 cut(s) 372, 548
HphI GGTGA 1 cut(s) 431
Hpy166II GTNNAC 4 cut(s) 319, 343, 418, 521
Hpy188I TCNGA 1 cut(s) 289
Hpy188III TCNNGA 4 cut(s) 352, 487, 526, 534
Hpy8I GTNNAC 4 cut(s) 319, 343, 418, 521
HpyAV CCTTC 3 cut(s) 349, 353, 419
HpyCH4III ACNGT 2 cut(s) 46, 168
HpyCH4V TGCA 2 cut(s) 216, 273
HpyF10VI GCNNNNNNNGC 1 cut(s) 559
HpyF3I CTNAG 3 cut(s) 77, 467, 563
Hsp92II CATG 2 cut(s) 502, 529
Kzo9I GATC 3 cut(s) 26, 73, 184
LmnI GCTCC 1 cut(s) 340
Lsp1109I GCAGC 1 cut(s) 494
LweI GCATC 1 cut(s) 480
MaeI CTAG 1 cut(s) 413
MaeIII GTNAC 1 cut(s) 245
MalI GATC 3 cut(s) 28, 75, 186
MboI GATC 3 cut(s) 26, 73, 184
MboII GAAGA 2 cut(s) 272, 584
MluCI AATT 2 cut(s) 145, 198
MlyI GAGTC 1 cut(s) 557
MnlI CCTC 3 cut(s) 21, 469, 521
MseI TTAA 1 cut(s) 57
MslI CAYNNNNRTG 1 cut(s) 211
MspR9I CCNGG 2 cut(s) 233, 240
MvaI CCWGG 2 cut(s) 233, 240
MwoI GCNNNNNNNGC 1 cut(s) 559
NdeI CATATG 1 cut(s) 584
NdeII GATC 3 cut(s) 26, 73, 184
NlaIII CATG 2 cut(s) 502, 529
NlaIV GGNNCC 1 cut(s) 237
PagI TCATGA 1 cut(s) 525
PfeI GAWTC 1 cut(s) 372
PflMI CCANNNNNTGG 1 cut(s) 23
PkrI GCNGC 1 cut(s) 509
PleI GAGTC 1 cut(s) 556
PpsI GAGTC 1 cut(s) 556
Psp6I CCWGG 2 cut(s) 231, 238
PspFI CCCAGC 1 cut(s) 16
PspGI CCWGG 2 cut(s) 231, 238
PspN4I GGNNCC 1 cut(s) 237
PstNI CAGNNNCTG 1 cut(s) 23
RseI CAYNNNNRTG 1 cut(s) 211
SaqAI TTAA 1 cut(s) 57
SatI GCNGC 1 cut(s) 508
Sau3AI GATC 3 cut(s) 26, 73, 184
SchI GAGTC 1 cut(s) 557
ScrFI CCNGG 2 cut(s) 233, 240
SetI ASST 3 cut(s) 159, 480, 629
SfaNI GCATC 1 cut(s) 480
SmiMI CAYNNNNRTG 1 cut(s) 211
Sse9I AATT 2 cut(s) 145, 198
SsiI CCGC 2 cut(s) 129, 442
SspMI CTAG 1 cut(s) 413
StyD4I CCNGG 2 cut(s) 231, 238
TaaI ACNGT 2 cut(s) 46, 168
TaqI TCGA 4 cut(s) 72, 172, 474, 488
TasI AATT 2 cut(s) 145, 198
TfiI GAWTC 1 cut(s) 372
Tru1I TTAA 1 cut(s) 57
Tru9I TTAA 1 cut(s) 57
TscAI CASTG 2 cut(s) 28, 398
TseI GCWGC 1 cut(s) 507
TspDTI ATGAA 1 cut(s) 177
TspGWI ACGGA 2 cut(s) 201, 336
TspRI CASTG 2 cut(s) 28, 398
Van91I CCANNNNNTGG 1 cut(s) 23
XapI RAATTY 1 cut(s) 198
XmiI GTMKAC 1 cut(s) 342
XspI CTAG 1 cut(s) 413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.