Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0025270.1

Orthogroup ID

OG0002888

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1534

Gene Structure 1534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0025270.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

atggcgaccactgaggccccaaagacgatctacgacttcactgtcaaggatgctaaggggaatgatgtggatgttagcgtttacaagggaaaagttctgctcattgtcaatgttgcttccaaatgtggactgacaaactcaaactacgcggagctgaatcaactatatgaaaagtataaagatcaaggattcgagatactagcttttccttgcaatcagtttggtgcacaggaaccgggaagtaatgaagagattgaagagtttgtctgcactcgtttcaaatcagaatttccgatatttgacaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0016209 GO:0016491 GO:0016684 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00480 ko00590 ko04918 map00480 map00590 map04918

Pfam Domains

Protein Families

GSHPx

Protein Analysis

102

Amino Acids

11.49

Weight (kDa)

4.67

Isoelectric Point (pI)

33.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63460
fragaria_vesca	FvH4_5g02170 FvH4_5g02170 FvH4_5g02171
malus_domestica	MD06G1081400.v1.1 MD06G1081500.v1.1 MD06G1081600.v1.1 MD14G1103300.v1.1 MD14G1103400.v1.1
prunus_persica	Prupe.5G098500_v2.0.a1 Prupe.5G098600_v2.0.a1 Prupe.5G098600_v2.0.a1 Prupe.5G098700_v2.0.a1
pyrus_communis	pycom06g07840 pycom14g09920 pycom14g09930
rosa_chinensis	RchiOBHm_Chr6g0245721 RchiOBHm_Chr7g0197971 RchiOBHm_Chr7g0197981
rosa_laevigata	RLG00000003896 RLG00000003897
rosa_multiflora	Rmu_co8195742.1_g000001 Rmu_sc0001082.1_g000007 Rmu_sc0025270.1_g000001
rosa_roxburghii	Rroxscaffold_3G00258040 Rroxscaffold_3G00258050
rosa_rugosa	Rorug02G0237300 Rorug07G0045000
rosa_samantha	Rh7AG168400 Rh7BG171400 Rh7BG171500 Rh7CG177900 Rh7CG178000 Rh7CG467800 Rh7DG170500 Rh7DG170600
rosa_wichuraiana	Rw7G014710 Rw7G014720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	41
AccII	CGCG	1 cut(s)	149
AciI	CCGC	1 cut(s)	149
AcsI	RAATTY	1 cut(s)	287
AgsI	TTSAA	2 cut(s)	257, 280
AluBI	AGCT	2 cut(s)	154, 203
AluI	AGCT	2 cut(s)	154, 203
Alw21I	GWGCWC	1 cut(s)	229
Alw44I	GTGCAC	1 cut(s)	225
AoxI	GGCC	1 cut(s)	15
ApaLI	GTGCAC	1 cut(s)	225
ApoI	RAATTY	1 cut(s)	287
AspS9I	GGNCC	1 cut(s)	16
AsuC2I	CCSGG	1 cut(s)	237
BaeGI	GKGCMC	1 cut(s)	229
Bbv12I	GWGCWC	1 cut(s)	229
BcnI	CCSGG	1 cut(s)	237
BfaI	CTAG	1 cut(s)	200
Bme1390I	CCNGG	1 cut(s)	237
BmgT120I	GGNCC	1 cut(s)	16
BmiI	GGNNCC	2 cut(s)	18, 234
BmrFI	CCNGG	1 cut(s)	237
BmsI	GCATC	1 cut(s)	40
Bpu10I	CCTNAGC	1 cut(s)	54
BpuMI	CCSGG	1 cut(s)	237
BseGI	GGATG	2 cut(s)	55, 76
BseSI	GKGCMC	1 cut(s)	229
BsgI	GTGCAG	1 cut(s)	253
Bsh1236I	CGCG	1 cut(s)	149
BshFI	GGCC	1 cut(s)	17
BsiHKAI	GWGCWC	1 cut(s)	229
BsiSI	CCGG	1 cut(s)	236
BsnI	GGCC	1 cut(s)	17
Bsp1286I	GDGCHC	1 cut(s)	229
Bsp143I	GATC	2 cut(s)	27, 181
BspACI	CCGC	1 cut(s)	149
BspANI	GGCC	1 cut(s)	17
BspCNI	CTCAG	1 cut(s)	4
BspFNI	CGCG	1 cut(s)	149
BspLI	GGNNCC	2 cut(s)	18, 234
BssMI	GATC	2 cut(s)	27, 181
Bst4CI	ACNGT	1 cut(s)	43
Bst6I	CTCTTC	2 cut(s)	243, 252
BstDEI	CTNAG	2 cut(s)	12, 54
BstF5I	GGATG	2 cut(s)	55, 76
BstFNI	CGCG	1 cut(s)	149
BstKTI	GATC	2 cut(s)	30, 184
BstMBI	GATC	2 cut(s)	27, 181
BstSCI	CCNGG	1 cut(s)	235
BstSLI	GKGCMC	1 cut(s)	229
BstUI	CGCG	1 cut(s)	149
BsuRI	GGCC	1 cut(s)	17
BtsCI	GGATG	2 cut(s)	55, 76
BtsIMutI	CAGTG	2 cut(s)	9, 39
Cfr13I	GGNCC	1 cut(s)	16
CviJI	RGCY	3 cut(s)	17, 154, 203
CviKI_1	RGCY	3 cut(s)	17, 154, 203
DdeI	CTNAG	2 cut(s)	12, 54
DpnI	GATC	2 cut(s)	29, 183
DpnII	GATC	2 cut(s)	27, 181
DrdI	GACNNNNNNGTC	1 cut(s)	41
DseDI	GACNNNNNNGTC	1 cut(s)	41
Eam1104I	CTCTTC	2 cut(s)	243, 252
EarI	CTCTTC	2 cut(s)	243, 252
EcoO109I	RGGNCCY	1 cut(s)	16
FaiI	YATR	3 cut(s)	166, 168, 177
FokI	GGATG	2 cut(s)	62, 83
FspBI	CTAG	1 cut(s)	200
HaeIII	GGCC	1 cut(s)	17
HapII	CCGG	1 cut(s)	236
HinfI	GANTC	2 cut(s)	157, 189
HpaII	CCGG	1 cut(s)	236
Hpy166II	GTNNAC	3 cut(s)	82, 128, 227
Hpy188I	TCNGA	2 cut(s)	286, 294
Hpy188III	TCNNGA	1 cut(s)	193
Hpy8I	GTNNAC	3 cut(s)	82, 128, 227
HpyCH4III	ACNGT	1 cut(s)	43
HpyCH4V	TGCA	3 cut(s)	213, 227, 270
HpyF3I	CTNAG	2 cut(s)	12, 54
Kzo9I	GATC	2 cut(s)	27, 181
LmnI	GCTCC	1 cut(s)	151
LpnPI	CCDG	2 cut(s)	215, 249
LweI	GCATC	1 cut(s)	40
MaeI	CTAG	1 cut(s)	200
MalI	GATC	2 cut(s)	29, 183
MboI	GATC	2 cut(s)	27, 181
MboII	GAAGA	2 cut(s)	260, 269
MhlI	GDGCHC	1 cut(s)	229
MluCI	AATT	1 cut(s)	287
MnlI	CCTC	1 cut(s)	7
MspI	CCGG	1 cut(s)	236
MspR9I	CCNGG	1 cut(s)	237
MvnI	CGCG	1 cut(s)	149
NciI	CCSGG	1 cut(s)	237
NdeII	GATC	2 cut(s)	27, 181
NlaIV	GGNNCC	2 cut(s)	18, 234
PfeI	GAWTC	2 cut(s)	157, 189
PspN4I	GGNNCC	2 cut(s)	18, 234
PspPI	GGNCC	1 cut(s)	16
Sau3AI	GATC	2 cut(s)	27, 181
Sau96I	GGNCC	1 cut(s)	16
ScrFI	CCNGG	1 cut(s)	237
SduI	GDGCHC	1 cut(s)	229
SetI	ASST	2 cut(s)	156, 205
SfaNI	GCATC	1 cut(s)	40
Sse9I	AATT	1 cut(s)	287
SsiI	CCGC	1 cut(s)	149
SspMI	CTAG	1 cut(s)	200
StyD4I	CCNGG	1 cut(s)	235
TaaI	ACNGT	1 cut(s)	43
TaqI	TCGA	1 cut(s)	192
TasI	AATT	1 cut(s)	287
TfiI	GAWTC	2 cut(s)	157, 189
TscAI	CASTG	2 cut(s)	16, 46
TspDTI	ATGAA	2 cut(s)	183, 261
TspRI	CASTG	2 cut(s)	16, 46
VneI	GTGCAC	1 cut(s)	225
XapI	RAATTY	1 cut(s)	287
XspI	CTAG	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.