Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0002888

Physical Location & Seq

Genomic Coordinates Forward (+)

15978963 .. 15980032

Gene Structure 1070 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1103400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGTTTGTGCAGGACGTTAAGGGAAAGGATGTCGATCTCAGCATGTACAGGGGAAAGGTTGTGATGGTTGTTAATGTTGCTTCCCAATGTGGATTGACGGAGGAAAATTACACGGAGTTGAATCAACTATATCAAAAGTATAAAGATCAAGGCTTGGAGATTCTGGCATTTCCGTGTAACCAGTTTAATGCTCAGGAACCAGGAAGTAATGATCAGATTCAAGAGTTTGCCTGCACTCGTTTCAAAACAGCATTCCCAATTTTTAACAAGATTAAAGTAAACGGCCTTAATACTGCTCCGTTGTACAAGTTCTTGAAGTTAGGCAAATGGGGATTCTTCGGAGACGATATCCAGTGGAACTTTGCTAAGTTTCTTGTCAACAAGCAAGGAAAACCTGTCGGTCGTTATTACCCAACAACTTCCCCCCTTAGCCTTCAGGTGAAAACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0016209 GO:0016491 GO:0016684 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00480 ko00590 ko04918 map00480 map00590 map04918

Pfam Domains

Protein Families

GSHPx

Protein Analysis

150

Amino Acids

17.04

Weight (kDa)

9.08

Isoelectric Point (pI)

29.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GSHPx	PF00255	3 - 106	6.1e-41	Glutathione peroxidase
AhpC-TSA	PF00578	4 - 61	2.6e-07	AhpC/TSA family
Redoxin	PF08534	6 - 57	5e-06	Redoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63460
fragaria_vesca	FvH4_5g02170 FvH4_5g02170 FvH4_5g02171
malus_domestica	MD06G1081400.v1.1 MD06G1081500.v1.1 MD06G1081600.v1.1 MD14G1103300.v1.1 MD14G1103400.v1.1
prunus_persica	Prupe.5G098500_v2.0.a1 Prupe.5G098600_v2.0.a1 Prupe.5G098600_v2.0.a1 Prupe.5G098700_v2.0.a1
pyrus_communis	pycom06g07840 pycom14g09920 pycom14g09930
rosa_chinensis	RchiOBHm_Chr6g0245721 RchiOBHm_Chr7g0197971 RchiOBHm_Chr7g0197981
rosa_laevigata	RLG00000003896 RLG00000003897
rosa_multiflora	Rmu_co8195742.1_g000001 Rmu_sc0001082.1_g000007 Rmu_sc0025270.1_g000001
rosa_roxburghii	Rroxscaffold_3G00258040 Rroxscaffold_3G00258050
rosa_rugosa	Rorug02G0237300 Rorug07G0045000
rosa_samantha	Rh7AG168400 Rh7BG171400 Rh7BG171500 Rh7CG177900 Rh7CG178000 Rh7CG467800 Rh7DG170500 Rh7DG170600
rosa_wichuraiana	Rw7G014710 Rw7G014720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	419
AfaI	GTAC	2 cut(s)	47, 305
AgsI	TTSAA	4 cut(s)	121, 221, 244, 316
AjnI	CCWGG	1 cut(s)	199
Alw26I	GTCTC	1 cut(s)	336
AoxI	GGCC	1 cut(s)	283
BccI	CCATC	1 cut(s)	58
BceAI	ACGGC	1 cut(s)	298
BciT130I	CCWGG	1 cut(s)	201
BclI	TGATCA	1 cut(s)	211
BcoDI	GTCTC	1 cut(s)	336
Bme1390I	CCNGG	1 cut(s)	201
BmiI	GGNNCC	1 cut(s)	198
BmrFI	CCNGG	1 cut(s)	201
Bpu10I	CCTNAGC	2 cut(s)	192, 428
BsaBI	GATNNNNATC	1 cut(s)	33
Bse1I	ACTGG	2 cut(s)	181, 352
Bse8I	GATNNNNATC	1 cut(s)	33
BseBI	CCWGG	1 cut(s)	201
BseGI	GGATG	1 cut(s)	34
BseJI	GATNNNNATC	1 cut(s)	33
BseMII	CTCAG	2 cut(s)	52, 206
BseNI	ACTGG	2 cut(s)	181, 352
BsgI	GTGCAG	2 cut(s)	29, 217
Bsh1285I	CGRYCG	1 cut(s)	403
BshFI	GGCC	1 cut(s)	285
BsiEI	CGRYCG	1 cut(s)	403
BsmAI	GTCTC	1 cut(s)	336
BsmBI	CGTCTC	1 cut(s)	336
BsmI	GAATGC	1 cut(s)	251
BsnI	GGCC	1 cut(s)	285
Bsp1407I	TGTACA	2 cut(s)	45, 303
Bsp143I	GATC	3 cut(s)	34, 145, 211
BspANI	GGCC	1 cut(s)	285
BspCNI	CTCAG	2 cut(s)	51, 205
BspLI	GGNNCC	1 cut(s)	198
BsrGI	TGTACA	2 cut(s)	45, 303
BsrI	ACTGG	2 cut(s)	181, 352
BssMI	GATC	3 cut(s)	34, 145, 211
Bst2UI	CCWGG	1 cut(s)	201
BstAUI	TGTACA	2 cut(s)	45, 303
BstC8I	GCNNGC	1 cut(s)	232
BstDEI	CTNAG	5 cut(s)	38, 192, 366, 428, 447
BstF5I	GGATG	1 cut(s)	34
BstKTI	GATC	3 cut(s)	37, 148, 214
BstMAI	GTCTC	1 cut(s)	336
BstMBI	GATC	3 cut(s)	34, 145, 211
BstMCI	CGRYCG	1 cut(s)	403
BstNI	CCWGG	1 cut(s)	201
BstNSI	RCATGY	1 cut(s)	46
BstSCI	CCNGG	1 cut(s)	199
BsuRI	GGCC	1 cut(s)	285
BtsCI	GGATG	1 cut(s)	34
BtsIMutI	CAGTG	1 cut(s)	359
Cac8I	GCNNGC	1 cut(s)	232
Csp6I	GTAC	2 cut(s)	46, 304
CviAII	CATG	1 cut(s)	43
CviJI	RGCY	3 cut(s)	153, 285, 432
CviKI_1	RGCY	3 cut(s)	153, 285, 432
CviQI	GTAC	2 cut(s)	46, 304
DdeI	CTNAG	5 cut(s)	38, 192, 366, 428, 447
DpnI	GATC	3 cut(s)	36, 147, 213
DpnII	GATC	3 cut(s)	34, 145, 211
Eco32I	GATATC	1 cut(s)	349
Eco57I	CTGAAG	1 cut(s)	419
EcoRII	CCWGG	1 cut(s)	199
EcoRV	GATATC	1 cut(s)	349
Esp3I	CGTCTC	1 cut(s)	336
FaeI	CATG	1 cut(s)	46
FaiI	YATR	3 cut(s)	44, 130, 141
FatI	CATG	1 cut(s)	42
FbaI	TGATCA	1 cut(s)	211
FokI	GGATG	1 cut(s)	41
HaeIII	GGCC	1 cut(s)	285
Hin1II	CATG	1 cut(s)	46
HincII	GTYRAC	1 cut(s)	379
HindII	GTYRAC	1 cut(s)	379
HinfI	GANTC	4 cut(s)	121, 160, 217, 333
Hpy166II	GTNNAC	2 cut(s)	280, 379
Hpy188I	TCNGA	2 cut(s)	216, 341
Hpy188III	TCNNGA	3 cut(s)	194, 221, 313
Hpy8I	GTNNAC	2 cut(s)	280, 379
HpyAV	CCTTC	1 cut(s)	443
HpyCH4IV	ACGT	1 cut(s)	15
HpyCH4V	TGCA	2 cut(s)	10, 234
HpyF3I	CTNAG	5 cut(s)	38, 192, 366, 428, 447
HpySE526I	ACGT	1 cut(s)	15
Hsp92II	CATG	1 cut(s)	46
Ksp22I	TGATCA	1 cut(s)	211
Kzo9I	GATC	3 cut(s)	34, 145, 211
LmnI	GCTCC	1 cut(s)	301
MaeII	ACGT	1 cut(s)	15
MaeIII	GTNAC	1 cut(s)	176
MalI	GATC	3 cut(s)	36, 147, 213
MboI	GATC	3 cut(s)	34, 145, 211
MboII	GAAGA	1 cut(s)	328
MluCI	AATT	2 cut(s)	106, 258
MnlI	CCTC	1 cut(s)	94
MseI	TTAA	6 cut(s)	18, 72, 186, 264, 273, 288
MslI	CAYNNNNRTG	1 cut(s)	172
MspR9I	CCNGG	1 cut(s)	201
Mva1269I	GAATGC	1 cut(s)	251
MvaI	CCWGG	1 cut(s)	201
NdeII	GATC	3 cut(s)	34, 145, 211
NlaIII	CATG	1 cut(s)	46
NlaIV	GGNNCC	1 cut(s)	198
NspI	RCATGY	1 cut(s)	46
PctI	GAATGC	1 cut(s)	251
PfeI	GAWTC	4 cut(s)	121, 160, 217, 333
Psp6I	CCWGG	1 cut(s)	199
PspGI	CCWGG	1 cut(s)	199
PspN4I	GGNNCC	1 cut(s)	198
RsaI	GTAC	2 cut(s)	47, 305
RsaNI	GTAC	2 cut(s)	46, 304
RseI	CAYNNNNRTG	1 cut(s)	172
SaqAI	TTAA	6 cut(s)	18, 72, 186, 264, 273, 288
Sau3AI	GATC	3 cut(s)	34, 145, 211
ScrFI	CCNGG	1 cut(s)	201
SetI	ASST	4 cut(s)	18, 60, 397, 441
SmiMI	CAYNNNNRTG	1 cut(s)	172
Sse9I	AATT	2 cut(s)	106, 258
StyD4I	CCNGG	1 cut(s)	199
TaiI	ACGT	1 cut(s)	18
TaqI	TCGA	1 cut(s)	33
TaqII	GACCGA	1 cut(s)	389
TasI	AATT	2 cut(s)	106, 258
TatI	WGTACW	2 cut(s)	45, 303
TfiI	GAWTC	4 cut(s)	121, 160, 217, 333
Tru1I	TTAA	6 cut(s)	18, 72, 186, 264, 273, 288
Tru9I	TTAA	6 cut(s)	18, 72, 186, 264, 273, 288
TscAI	CASTG	1 cut(s)	359
TspGWI	ACGGA	4 cut(s)	113, 128, 162, 288
TspRI	CASTG	1 cut(s)	359
XceI	RCATGY	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.