Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0002888

Physical Location & Seq

Genomic Coordinates Reverse (-)

15189011 .. 15190642

Gene Structure 1632 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG178000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGCAACCCAACCTACTGAGACCCCCAAAACAATTTATGACCTCACTGTCAAGGATGCCAAGGGAAATGATGTGGATCTTAGTGTGTACAAAGGGAAAGTTCTACTGATTGTCAATGTTGCTTCCAAATGTGGACTGACCAACTCGAATTACACGGAGCTGAATCAACTATATCAACAGTATAAAGACCAAGGCTTGGAGATACTGGCGTTTCCTTGCAATCAGTTTGGTGAAGAGGAACCAGGAAGTAATAAAGAGATTGAAGACTTTGTCTGCACTCGTTTCAAATCAGAATTTCCAATATTTGACAAGATTGATGTAAATGGTGATAATGCTGCTCCATTGTACAAGTTCTTGAAGTCAGGCAAACGGGGAGTCTTTGGAGATGACATTCAATGGAACTTTTCGAAGTTTCTAGTTGACAAGGATGGGATAGTTGCTCACCGCTATTACCCTACAACTGCCGCCCTTAGCCTTGAGGTAAAAACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0016209 GO:0016491 GO:0016684 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00480 ko00590 ko04918 map00480 map00590 map04918

Pfam Domains

Protein Families

GSHPx

Protein Analysis

163

Amino Acids

18.34

Weight (kDa)

5.07

Isoelectric Point (pI)

23.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GSHPx	PF00255	12 - 120	1.1e-44	Glutathione peroxidase
AhpC-TSA	PF00578	12 - 77	3.9e-08	AhpC/TSA family
Redoxin	PF08534	14 - 71	6.1e-06	Redoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63460
fragaria_vesca	FvH4_5g02170 FvH4_5g02170 FvH4_5g02171
malus_domestica	MD06G1081400.v1.1 MD06G1081500.v1.1 MD06G1081600.v1.1 MD14G1103300.v1.1 MD14G1103400.v1.1
prunus_persica	Prupe.5G098500_v2.0.a1 Prupe.5G098600_v2.0.a1 Prupe.5G098600_v2.0.a1 Prupe.5G098700_v2.0.a1
pyrus_communis	pycom06g07840 pycom14g09920 pycom14g09930
rosa_chinensis	RchiOBHm_Chr6g0245721 RchiOBHm_Chr7g0197971 RchiOBHm_Chr7g0197981
rosa_laevigata	RLG00000003896 RLG00000003897
rosa_multiflora	Rmu_co8195742.1_g000001 Rmu_sc0001082.1_g000007 Rmu_sc0025270.1_g000001
rosa_roxburghii	Rroxscaffold_3G00258040 Rroxscaffold_3G00258050
rosa_rugosa	Rorug02G0237300 Rorug07G0045000
rosa_samantha	Rh7AG168400 Rh7BG171400 Rh7BG171500 Rh7CG177900 Rh7CG178000 Rh7CG467800 Rh7DG170500 Rh7DG170600
rosa_wichuraiana	Rw7G014710 Rw7G014720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	47
AccB7I	CCANNNNNTGG	1 cut(s)	196
AciI	CCGC	2 cut(s)	445, 465
AclWI	GGATC	1 cut(s)	84
AcsI	RAATTY	1 cut(s)	293
AfaI	GTAC	2 cut(s)	89, 347
AfiI	CCNNNNNNNGG	1 cut(s)	196
AgsI	TTSAA	4 cut(s)	263, 286, 358, 395
AjnI	CCWGG	1 cut(s)	241
AluBI	AGCT	1 cut(s)	160
AluI	AGCT	1 cut(s)	160
Alw26I	GTCTC	1 cut(s)	14
AlwI	GGATC	1 cut(s)	84
ApeKI	GCWGC	1 cut(s)	335
ApoI	RAATTY	1 cut(s)	293
ArsI	GACNNNNNNTTYG	2 cut(s)	360, 392
AsuHPI	GGTGA	3 cut(s)	242, 338, 434
AsuII	TTCGAA	1 cut(s)	407
BaeI	ACNNNNGTAYC	2 cut(s)	194, 227
BbsI	GAAGAC	1 cut(s)	270
BbvI	GCAGC	1 cut(s)	322
BccI	CCATC	1 cut(s)	422
BciT130I	CCWGG	1 cut(s)	243
BcoDI	GTCTC	1 cut(s)	14
BfaI	CTAG	1 cut(s)	416
BisI	GCNGC	2 cut(s)	336, 465
BlsI	GCNGC	2 cut(s)	337, 466
Bme1390I	CCNGG	1 cut(s)	243
BmiI	GGNNCC	1 cut(s)	240
BmrFI	CCNGG	1 cut(s)	243
BmsI	GCATC	1 cut(s)	46
BpiI	GAAGAC	1 cut(s)	270
Bpu10I	CCTNAGC	1 cut(s)	470
Bpu14I	TTCGAA	1 cut(s)	407
BsaBI	GATNNNNATC	1 cut(s)	75
BsaI	GGTCTC	1 cut(s)	14
BsaJI	CCNNGG	2 cut(s)	60, 190
Bsc4I	CCNNNNNNNGG	1 cut(s)	196
Bse1I	ACTGG	1 cut(s)	210
Bse8I	GATNNNNATC	1 cut(s)	75
BseBI	CCWGG	1 cut(s)	243
BseDI	CCNNGG	2 cut(s)	60, 190
BseGI	GGATG	2 cut(s)	61, 433
BseJI	GATNNNNATC	1 cut(s)	75
BseLI	CCNNNNNNNGG	1 cut(s)	196
BseMII	CTCAG	1 cut(s)	9
BseNI	ACTGG	1 cut(s)	210
BseXI	GCAGC	1 cut(s)	322
BsgI	GTGCAG	1 cut(s)	259
BslI	CCNNNNNNNGG	1 cut(s)	196
BsmAI	GTCTC	1 cut(s)	14
Bso31I	GGTCTC	1 cut(s)	14
Bsp119I	TTCGAA	1 cut(s)	407
Bsp1407I	TGTACA	2 cut(s)	87, 345
Bsp143I	GATC	1 cut(s)	76
BspACI	CCGC	2 cut(s)	445, 465
BspCNI	CTCAG	1 cut(s)	10
BspLI	GGNNCC	1 cut(s)	240
BspPI	GGATC	1 cut(s)	84
BspT104I	TTCGAA	1 cut(s)	407
BspTNI	GGTCTC	1 cut(s)	14
BsrGI	TGTACA	2 cut(s)	87, 345
BsrI	ACTGG	1 cut(s)	210
BssECI	CCNNGG	2 cut(s)	60, 190
BssMI	GATC	1 cut(s)	76
BssT1I	CCWWGG	2 cut(s)	60, 190
Bst2UI	CCWGG	1 cut(s)	243
Bst4CI	ACNGT	2 cut(s)	49, 180
Bst6I	CTCTTC	1 cut(s)	228
BstAUI	TGTACA	2 cut(s)	87, 345
BstBI	TTCGAA	1 cut(s)	407
BstDEI	CTNAG	4 cut(s)	18, 80, 470, 489
BstF5I	GGATG	2 cut(s)	61, 433
BstKTI	GATC	1 cut(s)	79
BstMAI	GTCTC	1 cut(s)	14
BstMBI	GATC	1 cut(s)	76
BstNI	CCWGG	1 cut(s)	243
BstSCI	CCNGG	1 cut(s)	241
BstV1I	GCAGC	1 cut(s)	322
BstV2I	GAAGAC	1 cut(s)	270
BstX2I	RGATCY	1 cut(s)	76
BstYI	RGATCY	1 cut(s)	76
BtsCI	GGATG	2 cut(s)	61, 433
BtsIMutI	CAGTG	1 cut(s)	45
Csp6I	GTAC	2 cut(s)	88, 346
CviJI	RGCY	3 cut(s)	160, 195, 474
CviKI_1	RGCY	3 cut(s)	160, 195, 474
CviQI	GTAC	2 cut(s)	88, 346
DdeI	CTNAG	4 cut(s)	18, 80, 470, 489
DpnI	GATC	1 cut(s)	78
DpnII	GATC	1 cut(s)	76
DrdI	GACNNNNNNGTC	1 cut(s)	47
DseDI	GACNNNNNNGTC	1 cut(s)	47
Eam1104I	CTCTTC	1 cut(s)	228
EarI	CTCTTC	1 cut(s)	228
Eco130I	CCWWGG	2 cut(s)	60, 190
Eco31I	GGTCTC	1 cut(s)	14
EcoRII	CCWGG	1 cut(s)	241
EcoT14I	CCWWGG	2 cut(s)	60, 190
ErhI	CCWWGG	2 cut(s)	60, 190
FaiI	YATR	3 cut(s)	39, 172, 183
Fnu4HI	GCNGC	2 cut(s)	336, 465
FokI	GGATG	2 cut(s)	68, 440
Fsp4HI	GCNGC	2 cut(s)	336, 465
FspBI	CTAG	1 cut(s)	416
GluI	GCNGC	2 cut(s)	336, 465
HincII	GTYRAC	1 cut(s)	421
HindII	GTYRAC	1 cut(s)	421
HinfI	GANTC	2 cut(s)	163, 375
HphI	GGTGA	3 cut(s)	242, 338, 434
Hpy166II	GTNNAC	3 cut(s)	88, 134, 421
Hpy188I	TCNGA	1 cut(s)	292
Hpy188III	TCNNGA	1 cut(s)	355
Hpy8I	GTNNAC	3 cut(s)	88, 134, 421
HpyCH4III	ACNGT	2 cut(s)	49, 180
HpyCH4V	TGCA	2 cut(s)	219, 276
HpyF3I	CTNAG	4 cut(s)	18, 80, 470, 489
Kzo9I	GATC	1 cut(s)	76
LmnI	GCTCC	2 cut(s)	157, 343
LpnPI	CCDG	4 cut(s)	191, 228, 255, 348
Lsp1109I	GCAGC	1 cut(s)	322
LweI	GCATC	1 cut(s)	46
MaeI	CTAG	1 cut(s)	416
MalI	GATC	1 cut(s)	78
MboI	GATC	1 cut(s)	76
MboII	GAAGA	2 cut(s)	245, 275
MflI	RGATCY	1 cut(s)	76
MluCI	AATT	3 cut(s)	33, 148, 293
MlyI	GAGTC	1 cut(s)	384
MnlI	CCTC	3 cut(s)	53, 229, 472
MspR9I	CCNGG	1 cut(s)	243
MvaI	CCWGG	1 cut(s)	243
NdeII	GATC	1 cut(s)	76
NlaIV	GGNNCC	1 cut(s)	240
NspV	TTCGAA	1 cut(s)	407
PfeI	GAWTC	1 cut(s)	163
PflFI	GACNNNGTC	1 cut(s)	269
PflMI	CCANNNNNTGG	1 cut(s)	196
PkrI	GCNGC	2 cut(s)	337, 466
PleI	GAGTC	1 cut(s)	383
PpsI	GAGTC	1 cut(s)	383
Psp6I	CCWGG	1 cut(s)	241
PspGI	CCWGG	1 cut(s)	241
PspN4I	GGNNCC	1 cut(s)	240
PsuI	RGATCY	1 cut(s)	76
PsyI	GACNNNGTC	1 cut(s)	269
RsaI	GTAC	2 cut(s)	89, 347
RsaNI	GTAC	2 cut(s)	88, 346
SatI	GCNGC	2 cut(s)	336, 465
Sau3AI	GATC	1 cut(s)	76
SchI	GAGTC	1 cut(s)	384
ScrFI	CCNGG	1 cut(s)	243
SetI	ASST	4 cut(s)	16, 45, 162, 483
SfaNI	GCATC	1 cut(s)	46
SfuI	TTCGAA	1 cut(s)	407
SmlI	CTYRAG	1 cut(s)	476
SmoI	CTYRAG	1 cut(s)	476
Sse9I	AATT	3 cut(s)	33, 148, 293
SsiI	CCGC	2 cut(s)	445, 465
SspI	AATATT	1 cut(s)	303
SspMI	CTAG	1 cut(s)	416
StyD4I	CCNGG	1 cut(s)	241
StyI	CCWWGG	2 cut(s)	60, 190
TaaI	ACNGT	2 cut(s)	49, 180
TaqI	TCGA	2 cut(s)	146, 407
TasI	AATT	3 cut(s)	33, 148, 293
TatI	WGTACW	2 cut(s)	87, 345
TauI	GCSGC	1 cut(s)	467
TfiI	GAWTC	1 cut(s)	163
TscAI	CASTG	1 cut(s)	52
TseI	GCWGC	1 cut(s)	335
TspGWI	ACGGA	1 cut(s)	170
TspRI	CASTG	1 cut(s)	52
Tth111I	GACNNNGTC	1 cut(s)	269
Van91I	CCANNNNNTGG	1 cut(s)	196
XapI	RAATTY	1 cut(s)	293
XspI	CTAG	1 cut(s)	416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.