Rorug02G0237300

Glutathione peroxidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0002888
Physical Location & Seq
Reverse (-)
23703042 .. 23704181
1140 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0237300.1

Sequence Viewer

Length: 1140 bp
ATGATGCAAGTCTACGGAAACCAGGTGCCACGTTATGGACCAATCAAGAATTCTATGAGTTCTGTCAAGAATCAAGGTCCATGTAAGCCACGCTATATGCCTTTTCCGGCTAATCACCGGAACCAGGTGCCGCCGGTCGGTCATTTTCAGCCCCAATTTCTTCCACCTCGACCAAATTTCTACCCATTTCCACAAACCCTGATGCCACCTTATTCATGTGGTGGGTACAATTTTCAAGGGCAGGGTGGTTCTGCTTCAGCAAGTTCTGTCCCTCATCGTCTACCACCGCAAGGCGTATCTCCGGTTAACGGTGCTGGTCCAGTAGTCTCTGGTTTGCTTGGGTCTCTAATGGCACAAGGTGTGATCTCATTGAAAAATCAAAGCAGAGGAGGACTGGAGGGTACTAGTTCACTAAATTATCTACCTCTTGTACCACAGCGAGGCGCATTTCCTGTTCAAAATGTTGCTGCTGATGTTCCAGTAGTCGTTCCTGGTTTGATTGATTCTCTCCTGGCACAAGGTGTGATTTCGTTAAAGAAACAAAGCCCGGCACTGAAAGAGGAGAAAGATGCTGTGGTAGGATGTGAGTTTTCCGGCATTGATCTAAATCTGCGTCGCGAATCTGTGGTAATCGGCTTGTATGAGGGTGGTCTGCCAAGGCAATGTAAAAGCTGTGGCCTCCGGTTCAAGTGTGAAGAACAGCACAGCAGCCATATGGATTGGCATGTCAAGAAGAACCGGATGTCCAAAACCCGCAAGCAGAAGCCCTCTCGTAACTTTTATGCAACTACAAGCATGTGGCTTGTTACTGATGTAGAGGCTGAGGCTGAGGCTGAGGCATTACCTTCTGGTGTAGTTTTGTGCGCTGCTGACACCAGTGGCGTGGCGGAAAAGAAAAGGAAGACTAGTGATGAAGAAATGGTCGTTCCTGCGGACGAGGATCAGAGTAAATGTGCCTTATGCAGAGATGCTTTTGTTGAGTTTTATAGTCATGAGAAAGATGAGTGGATGTATAAAGGTGCTGTTTACTTGAATGCGCCTCAGGGGCCAGCGCCGGAGATGGATCGGTCACAGTTGGGTCCTATAGTCCATGCCAAATGCTGGTCGGAGGGTAGTAGGAAACGTCTGCGGAGGACTTGA

Protein Analysis

379

Amino Acids

41.49

Weight (kDa)

9.06

Isoelectric Point (pI)

58.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf_PCFS4 PF23228 304 - 370 3.2e-28 PCFS4 zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 25, 127
AccB7I CCANNNNNTGG 2 cut(s) 35, 1101
AccI GTMKAC 2 cut(s) 12, 280
AccII CGCG 1 cut(s) 618
AciI CCGC 6 cut(s) 131, 287, 754, 887, 932, 1129
AclWI GGATC 2 cut(s) 948, 1071
AcsI RAATTY 2 cut(s) 49, 175
AcuI CTGAAG 1 cut(s) 240
AdeI CACNNNGTG 2 cut(s) 359, 521
AfaI GTAC 3 cut(s) 227, 403, 432
AfiI CCNNNNNNNGG 7 cut(s) 35, 124, 137, 290, 308, 440, 1101
AgsI TTSAA 5 cut(s) 236, 373, 458, 688, 1033
AhlI ACTAGT 2 cut(s) 404, 905
AjnI CCWGG 4 cut(s) 21, 123, 490, 510
AjuI GAANNNNNNNTTGG 2 cut(s) 34, 66
AloI GAACNNNNNNTCC 2 cut(s) 728, 760
AluBI AGCT 1 cut(s) 672
AluI AGCT 1 cut(s) 672
Alw26I GTCTC 2 cut(s) 331, 348
AlwI GGATC 2 cut(s) 948, 1071
AoxI GGCC 2 cut(s) 676, 1046
ApeKI GCWGC 3 cut(s) 467, 708, 866
ApoI RAATTY 2 cut(s) 49, 175
AspLEI GCGC 4 cut(s) 446, 866, 1039, 1054
AspS9I GGNCC 5 cut(s) 38, 77, 317, 1046, 1079
AsuC2I CCSGG 1 cut(s) 548
AsuHPI GGTGA 1 cut(s) 107
AvaII GGWCC 4 cut(s) 38, 77, 317, 1079
AxyI CCTNAGG 1 cut(s) 1041
BanI GGYRCC 2 cut(s) 25, 127
BbsI GAAGAC 1 cut(s) 908
BbvCI CCTCAGC 3 cut(s) 822, 828, 834
BbvI GCAGC 3 cut(s) 454, 720, 853
BccI CCATC 1 cut(s) 1054
BciT130I CCWGG 4 cut(s) 23, 125, 492, 512
BcnI CCSGG 1 cut(s) 548
BcoDI GTCTC 2 cut(s) 331, 348
BcuI ACTAGT 2 cut(s) 404, 905
BfaI CTAG 2 cut(s) 405, 906
BfmI CTRYAG 1 cut(s) 1083
BfoI RGCGCY 1 cut(s) 1055
BglI GCCNNNNNGGC 1 cut(s) 1045
BisI GCNGC 4 cut(s) 131, 468, 709, 867
BlsI GCNGC 4 cut(s) 132, 469, 710, 868
Bme1390I CCNGG 5 cut(s) 23, 125, 492, 512, 548
Bme18I GGWCC 4 cut(s) 38, 77, 317, 1079
BmgT120I GGNCC 5 cut(s) 38, 77, 317, 1046, 1079
BmiI GGNNCC 5 cut(s) 27, 122, 129, 1047, 1080
BmrFI CCNGG 5 cut(s) 23, 125, 492, 512, 548
BmsI GCATC 3 cut(s) 192, 559, 958
BpiI GAAGAC 1 cut(s) 908
BpmI CTGGAG 1 cut(s) 416
Bpu10I CCTNAGC 3 cut(s) 822, 828, 834
BpuMI CCSGG 1 cut(s) 548
BsaBI GATNNNNATC 1 cut(s) 606
BsaI GGTCTC 1 cut(s) 348
BsaJI CCNNGG 1 cut(s) 656
BsaWI WCCGGW 4 cut(s) 117, 301, 681, 738
Bsc4I CCNNNNNNNGG 7 cut(s) 35, 124, 137, 290, 308, 440, 1101
Bse118I RCCGGY 1 cut(s) 133
Bse1I ACTGG 4 cut(s) 320, 399, 479, 876
Bse21I CCTNAGG 1 cut(s) 1041
Bse3DI GCAATG 1 cut(s) 668
Bse8I GATNNNNATC 1 cut(s) 606
BseBI CCWGG 4 cut(s) 23, 125, 492, 512
BseDI CCNNGG 1 cut(s) 656
BseGI GGATG 3 cut(s) 587, 747, 1014
BseJI GATNNNNATC 1 cut(s) 606
BseLI CCNNNNNNNGG 7 cut(s) 35, 124, 137, 290, 308, 440, 1101
BseMI GCAATG 1 cut(s) 668
BseMII CTCAG 4 cut(s) 813, 819, 825, 1055
BseNI ACTGG 4 cut(s) 320, 399, 479, 876
BseRI GAGGAG 2 cut(s) 402, 575
BseXI GCAGC 3 cut(s) 454, 720, 853
Bsh1236I CGCG 1 cut(s) 618
Bsh1285I CGRYCG 1 cut(s) 138
BshFI GGCC 2 cut(s) 678, 1048
BshNI GGYRCC 2 cut(s) 25, 127
BsiEI CGRYCG 1 cut(s) 138
BsiSI CCGG 9 cut(s) 107, 118, 134, 302, 548, 594, 682, 739, 1055
BslFI GGGAC 1 cut(s) 254
BslI CCNNNNNNNGG 7 cut(s) 35, 124, 137, 290, 308, 440, 1101
BsmAI GTCTC 2 cut(s) 331, 348
BsmFI GGGAC 1 cut(s) 254
BsmI GAATGC 1 cut(s) 1039
BsnI GGCC 2 cut(s) 678, 1048
Bso31I GGTCTC 1 cut(s) 348
Bsp143I GATC 4 cut(s) 363, 601, 940, 1063
Bsp68I TCGCGA 1 cut(s) 618
BspACI CCGC 6 cut(s) 131, 287, 754, 887, 932, 1129
BspANI GGCC 2 cut(s) 678, 1048
BspCNI CTCAG 4 cut(s) 814, 820, 826, 1054
BspFNI CGCG 1 cut(s) 618
BspHI TCATGA 1 cut(s) 991
BspLI GGNNCC 5 cut(s) 27, 122, 129, 1047, 1080
BspPI GGATC 2 cut(s) 948, 1071
BspT107I GGYRCC 2 cut(s) 25, 127
BspTNI GGTCTC 1 cut(s) 348
BsrDI GCAATG 1 cut(s) 668
BsrFI RCCGGY 1 cut(s) 133
BsrI ACTGG 4 cut(s) 320, 399, 479, 876
BssAI RCCGGY 1 cut(s) 133
BssECI CCNNGG 1 cut(s) 656
BssMI GATC 4 cut(s) 363, 601, 940, 1063
BssT1I CCWWGG 1 cut(s) 656
Bst2UI CCWGG 4 cut(s) 23, 125, 492, 512
Bst4CI ACNGT 2 cut(s) 311, 1074
BstC8I GCNNGC 2 cut(s) 758, 1050
BstDEI CTNAG 4 cut(s) 822, 828, 834, 1041
BstF5I GGATG 3 cut(s) 587, 747, 1014
BstFNI CGCG 1 cut(s) 618
BstH2I RGCGCY 1 cut(s) 1055
BstHHI GCGC 4 cut(s) 446, 866, 1039, 1054
BstKTI GATC 4 cut(s) 366, 604, 943, 1066
BstMAI GTCTC 2 cut(s) 331, 348
BstMBI GATC 4 cut(s) 363, 601, 940, 1063
BstMCI CGRYCG 1 cut(s) 138
BstMWI GCNNNNNNNGC 1 cut(s) 1045
BstNI CCWGG 4 cut(s) 23, 125, 492, 512
BstNSI RCATGY 2 cut(s) 728, 799
BstSCI CCNGG 5 cut(s) 21, 123, 490, 510, 546
BstSFI CTRYAG 1 cut(s) 1083
BstUI CGCG 1 cut(s) 618
BstV1I GCAGC 3 cut(s) 454, 720, 853
BstV2I GAAGAC 1 cut(s) 908
BstXI CCANNNNNNTGG 1 cut(s) 883
Bsu36I CCTNAGG 1 cut(s) 1041
BsuRI GGCC 2 cut(s) 678, 1048
BtsCI GGATG 3 cut(s) 587, 747, 1014
BtsIMutI CAGTG 2 cut(s) 551, 883
BtuMI TCGCGA 1 cut(s) 618
Cac8I GCNNGC 2 cut(s) 758, 1050
CciI TCATGA 1 cut(s) 991
CfoI GCGC 4 cut(s) 446, 866, 1039, 1054
Cfr10I RCCGGY 1 cut(s) 133
Cfr13I GGNCC 5 cut(s) 38, 77, 317, 1046, 1079
CseI GACGC 1 cut(s) 602
CsiI ACCWGGT 2 cut(s) 21, 123
Csp6I GTAC 3 cut(s) 226, 402, 431
CviAII CATG 6 cut(s) 81, 216, 725, 796, 992, 1091
CviQI GTAC 3 cut(s) 226, 402, 431
DdeI CTNAG 4 cut(s) 822, 828, 834, 1041
DpnI GATC 4 cut(s) 365, 603, 942, 1065
DpnII GATC 4 cut(s) 363, 601, 940, 1063
DraIII CACNNNGTG 2 cut(s) 359, 521
EciI GGCGGA 1 cut(s) 902
Eco130I CCWWGG 1 cut(s) 656
Eco31I GGTCTC 1 cut(s) 348
Eco47I GGWCC 4 cut(s) 38, 77, 317, 1079
Eco57I CTGAAG 1 cut(s) 240
Eco81I CCTNAGG 1 cut(s) 1041
EcoO109I RGGNCCY 1 cut(s) 1079
EcoRI GAATTC 1 cut(s) 49
EcoRII CCWGG 4 cut(s) 21, 123, 490, 510
EcoT14I CCWWGG 1 cut(s) 656
ErhI CCWWGG 1 cut(s) 656
FaeI CATG 6 cut(s) 84, 219, 728, 799, 995, 1094
FaqI GGGAC 1 cut(s) 254
FatI CATG 6 cut(s) 80, 215, 724, 795, 991, 1090
FauI CCCGC 1 cut(s) 761
FauNDI CATATG 1 cut(s) 714
FblI GTMKAC 2 cut(s) 12, 280
Fnu4HI GCNGC 4 cut(s) 131, 468, 709, 867
FokI GGATG 3 cut(s) 594, 754, 1021
Fsp4HI GCNGC 4 cut(s) 131, 468, 709, 867
FspBI CTAG 2 cut(s) 405, 906
GlaI GCGC 4 cut(s) 445, 865, 1038, 1053
GluI GCNGC 4 cut(s) 131, 468, 709, 867
GsuI CTGGAG 1 cut(s) 416
HaeII RGCGCY 1 cut(s) 1055
HaeIII GGCC 2 cut(s) 678, 1048
HapII CCGG 9 cut(s) 107, 118, 134, 302, 548, 594, 682, 739, 1055
HgaI GACGC 1 cut(s) 602
HhaI GCGC 4 cut(s) 446, 866, 1039, 1054
Hin1II CATG 6 cut(s) 84, 219, 728, 799, 995, 1094
Hin6I GCGC 4 cut(s) 444, 864, 1037, 1052
HinP1I GCGC 4 cut(s) 444, 864, 1037, 1052
HincII GTYRAC 1 cut(s) 307
HindII GTYRAC 1 cut(s) 307
HinfI GANTC 3 cut(s) 70, 503, 620
HpaI GTTAAC 1 cut(s) 307
HpaII CCGG 9 cut(s) 107, 118, 134, 302, 548, 594, 682, 739, 1055
HphI GGTGA 1 cut(s) 107
Hpy166II GTNNAC 5 cut(s) 13, 281, 307, 410, 1027
Hpy188I TCNGA 2 cut(s) 945, 1108
Hpy188III TCNNGA 5 cut(s) 46, 67, 617, 730, 992
Hpy8I GTNNAC 5 cut(s) 13, 281, 307, 410, 1027
Hpy99I CGWCG 1 cut(s) 618
HpyAV CCTTC 1 cut(s) 855
HpyCH4III ACNGT 2 cut(s) 311, 1074
HpyCH4IV ACGT 2 cut(s) 31, 1123
HpyCH4V TGCA 3 cut(s) 7, 785, 963
HpyF10VI GCNNNNNNNGC 1 cut(s) 1045
HpyF3I CTNAG 4 cut(s) 822, 828, 834, 1041
HpySE526I ACGT 2 cut(s) 31, 1123
Hsp92II CATG 6 cut(s) 84, 219, 728, 799, 995, 1094
HspAI GCGC 4 cut(s) 444, 864, 1037, 1052
KspAI GTTAAC 1 cut(s) 307
Kzo9I GATC 4 cut(s) 363, 601, 940, 1063
Lsp1109I GCAGC 3 cut(s) 454, 720, 853
LweI GCATC 3 cut(s) 192, 559, 958
MabI ACCWGGT 2 cut(s) 21, 123
MaeI CTAG 2 cut(s) 405, 906
MaeII ACGT 2 cut(s) 31, 1123
MaeIII GTNAC 3 cut(s) 773, 805, 1068
MalI GATC 4 cut(s) 365, 603, 942, 1065
MboI GATC 4 cut(s) 363, 601, 940, 1063
MboII GAAGA 5 cut(s) 152, 707, 745, 913, 926
MluCI AATT 5 cut(s) 49, 155, 175, 229, 415
MmeI TCCRAC 1 cut(s) 1086
MseI TTAA 2 cut(s) 306, 533
MspI CCGG 9 cut(s) 107, 118, 134, 302, 548, 594, 682, 739, 1055
MspR9I CCNGG 5 cut(s) 23, 125, 492, 512, 548
Mva1269I GAATGC 1 cut(s) 1039
MvaI CCWGG 4 cut(s) 23, 125, 492, 512
MvnI CGCG 1 cut(s) 618
MwoI GCNNNNNNNGC 1 cut(s) 1045
NciI CCSGG 1 cut(s) 548
NdeI CATATG 1 cut(s) 714
NdeII GATC 4 cut(s) 363, 601, 940, 1063
NlaIII CATG 6 cut(s) 84, 219, 728, 799, 995, 1094
NlaIV GGNNCC 5 cut(s) 27, 122, 129, 1047, 1080
NmuCI GTSAC 1 cut(s) 1068
NruI TCGCGA 1 cut(s) 618
NspI RCATGY 2 cut(s) 728, 799
PagI TCATGA 1 cut(s) 991
PctI GAATGC 1 cut(s) 1039
PfeI GAWTC 3 cut(s) 70, 503, 620
PflMI CCANNNNNTGG 2 cut(s) 35, 1101
PkrI GCNGC 4 cut(s) 132, 469, 710, 868
PpuMI RGGWCCY 1 cut(s) 1079
Psp5II RGGWCCY 1 cut(s) 1079
Psp6I CCWGG 4 cut(s) 21, 123, 490, 510
PspGI CCWGG 4 cut(s) 21, 123, 490, 510
PspN4I GGNNCC 5 cut(s) 27, 122, 129, 1047, 1080
PspPI GGNCC 5 cut(s) 38, 77, 317, 1046, 1079
PspPPI RGGWCCY 1 cut(s) 1079
RruI TCGCGA 1 cut(s) 618
RsaI GTAC 3 cut(s) 227, 403, 432
RsaNI GTAC 3 cut(s) 226, 402, 431
SaqAI TTAA 2 cut(s) 306, 533
SatI GCNGC 4 cut(s) 131, 468, 709, 867
Sau3AI GATC 4 cut(s) 363, 601, 940, 1063
Sau96I GGNCC 5 cut(s) 38, 77, 317, 1046, 1079
ScrFI CCNGG 5 cut(s) 23, 125, 492, 512, 548
SexAI ACCWGGT 2 cut(s) 21, 123
SfaNI GCATC 3 cut(s) 192, 559, 958
SfcI CTRYAG 1 cut(s) 1083
SinI GGWCC 4 cut(s) 38, 77, 317, 1079
SpeI ACTAGT 2 cut(s) 404, 905
Sse9I AATT 5 cut(s) 49, 155, 175, 229, 415
SsiI CCGC 6 cut(s) 131, 287, 754, 887, 932, 1129
SspMI CTAG 2 cut(s) 405, 906
StyD4I CCNGG 5 cut(s) 21, 123, 490, 510, 546
StyI CCWWGG 1 cut(s) 656
TaaI ACNGT 2 cut(s) 311, 1074
TaiI ACGT 2 cut(s) 34, 1126
TaqI TCGA 1 cut(s) 169
TaqII GACCGA 2 cut(s) 128, 1056
TasI AATT 5 cut(s) 49, 155, 175, 229, 415
TauI GCSGC 1 cut(s) 133
TfiI GAWTC 3 cut(s) 70, 503, 620
Tru1I TTAA 2 cut(s) 306, 533
Tru9I TTAA 2 cut(s) 306, 533
TscAI CASTG 2 cut(s) 558, 883
TseFI GTSAC 1 cut(s) 1068
TseI GCWGC 3 cut(s) 467, 708, 866
Tsp45I GTSAC 1 cut(s) 1068
TspDTI ATGAA 2 cut(s) 204, 927
TspGWI ACGGA 1 cut(s) 30
TspRI CASTG 2 cut(s) 558, 883
Van91I CCANNNNNTGG 2 cut(s) 35, 1101
VpaK11BI GGWCC 4 cut(s) 38, 77, 317, 1079
XapI RAATTY 2 cut(s) 49, 175
XceI RCATGY 2 cut(s) 728, 799
XmiI GTMKAC 2 cut(s) 12, 280
XspI CTAG 2 cut(s) 405, 906
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.