Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0002888

Physical Location & Seq

Genomic Coordinates Forward (+)

19968815 .. 19970981

Gene Structure 2167 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1081500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGCAAGTCCTCGCCCAGCCACTGGATCGTTTTATGACTTTACTGTCAAGGATATTAAGGGAAATGATGTCGATCTTAGCATTTACAAGGGAAAAGTTCTGCTGGTCATCAATGTTGCTTCCAAATGCGGACTGACCAACTCAAATTACGATGAGCTGAATCAACTGTATCAAAACTATAAAGATCAAGGCTTTGAAATTCTGGCATTTCCCTGCAACCAGTTTGGTAGTCAGGAACCAGGAAGTAACAAAGAGATTGAAGATTTTGTCTGCACTCGTTTCAAATCGGAGTTTCCCATTTTTGACAAGATTGAAGTAAACGGAGATAATGCTGCTCCAGTATACAAGTTCTTGAAGGAAGGCAAGTGGGGATTCTTTGGAGACGATATTCAGTGGAACTTTACCAAGTTTCTAGTTGACAAAGAAGGCAAAGCGTCTCACCGCTATTACCCAACCACTCCCCCCCTTAGCATCGAGCATGACATCAAGACCCTGTTGGGAGTCGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0016209 GO:0016491 GO:0016684 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00480 ko00590 ko04918 map00480 map00590 map04918

Pfam Domains

Protein Families

GSHPx

Protein Analysis

170

Amino Acids

19.15

Weight (kDa)

5.22

Isoelectric Point (pI)

31.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GSHPx	PF00255	11 - 119	9.6e-45	Glutathione peroxidase
Redoxin	PF08534	11 - 70	2.8e-06	Redoxin
AhpC-TSA	PF00578	12 - 74	8.1e-08	AhpC/TSA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63460
fragaria_vesca	FvH4_5g02170 FvH4_5g02170 FvH4_5g02171
malus_domestica	MD06G1081400.v1.1 MD06G1081500.v1.1 MD06G1081600.v1.1 MD14G1103300.v1.1 MD14G1103400.v1.1
prunus_persica	Prupe.5G098500_v2.0.a1 Prupe.5G098600_v2.0.a1 Prupe.5G098600_v2.0.a1 Prupe.5G098700_v2.0.a1
pyrus_communis	pycom06g07840 pycom14g09920 pycom14g09930
rosa_chinensis	RchiOBHm_Chr6g0245721 RchiOBHm_Chr7g0197971 RchiOBHm_Chr7g0197981
rosa_laevigata	RLG00000003896 RLG00000003897
rosa_multiflora	Rmu_co8195742.1_g000001 Rmu_sc0001082.1_g000007 Rmu_sc0025270.1_g000001
rosa_roxburghii	Rroxscaffold_3G00258040 Rroxscaffold_3G00258050
rosa_rugosa	Rorug02G0237300 Rorug07G0045000
rosa_samantha	Rh7AG168400 Rh7BG171400 Rh7BG171500 Rh7CG177900 Rh7CG178000 Rh7CG467800 Rh7DG170500 Rh7DG170600
rosa_wichuraiana	Rw7G014710 Rw7G014720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	44
AccB7I	CCANNNNNTGG	1 cut(s)	23
AccI	GTMKAC	1 cut(s)	342
AciI	CCGC	2 cut(s)	129, 442
AclWI	GGATC	1 cut(s)	34
AcsI	RAATTY	1 cut(s)	198
AfiI	CCNNNNNNNGG	1 cut(s)	23
AgsI	TTSAA	5 cut(s)	197, 260, 283, 314, 355
AjnI	CCWGG	1 cut(s)	238
AluBI	AGCT	1 cut(s)	157
AluI	AGCT	1 cut(s)	157
Alw26I	GTCTC	2 cut(s)	375, 441
AlwI	GGATC	1 cut(s)	34
AlwNI	CAGNNNCTG	1 cut(s)	23
ApeKI	GCWGC	1 cut(s)	332
ApoI	RAATTY	1 cut(s)	198
AsuHPI	GGTGA	1 cut(s)	431
BbvI	GCAGC	1 cut(s)	319
BciT130I	CCWGG	1 cut(s)	240
BcoDI	GTCTC	2 cut(s)	375, 441
BfaI	CTAG	1 cut(s)	413
BisI	GCNGC	1 cut(s)	333
BlsI	GCNGC	1 cut(s)	334
Bme1390I	CCNGG	1 cut(s)	240
BmiI	GGNNCC	1 cut(s)	237
BmrFI	CCNGG	1 cut(s)	240
BmsI	GCATC	1 cut(s)	480
BpmI	CTGGAG	1 cut(s)	321
Bpu10I	CCTNAGC	1 cut(s)	467
BsaBI	GATNNNNATC	1 cut(s)	72
Bsc4I	CCNNNNNNNGG	1 cut(s)	23
Bse1I	ACTGG	3 cut(s)	28, 220, 338
Bse8I	GATNNNNATC	1 cut(s)	72
BseBI	CCWGG	1 cut(s)	240
BseJI	GATNNNNATC	1 cut(s)	72
BseLI	CCNNNNNNNGG	1 cut(s)	23
BseNI	ACTGG	3 cut(s)	28, 220, 338
BseXI	GCAGC	1 cut(s)	319
BseYI	CCCAGC	1 cut(s)	16
BsgI	GTGCAG	1 cut(s)	256
BslI	CCNNNNNNNGG	1 cut(s)	23
BsmAI	GTCTC	2 cut(s)	375, 441
BsmBI	CGTCTC	2 cut(s)	375, 441
Bsp143I	GATC	3 cut(s)	26, 73, 184
BspACI	CCGC	2 cut(s)	129, 442
BspLI	GGNNCC	1 cut(s)	237
BspPI	GGATC	1 cut(s)	34
BsrI	ACTGG	3 cut(s)	28, 220, 338
BssMI	GATC	3 cut(s)	26, 73, 184
BssNAI	GTATAC	1 cut(s)	343
Bst1107I	GTATAC	1 cut(s)	343
Bst2UI	CCWGG	1 cut(s)	240
Bst4CI	ACNGT	2 cut(s)	46, 168
BstDEI	CTNAG	2 cut(s)	77, 467
BstKTI	GATC	3 cut(s)	29, 76, 187
BstMAI	GTCTC	2 cut(s)	375, 441
BstMBI	GATC	3 cut(s)	26, 73, 184
BstNI	CCWGG	1 cut(s)	240
BstSCI	CCNGG	1 cut(s)	238
BstV1I	GCAGC	1 cut(s)	319
BstZ17I	GTATAC	1 cut(s)	343
BtsIMutI	CAGTG	2 cut(s)	21, 398
CaiI	CAGNNNCTG	1 cut(s)	23
CseI	GACGC	1 cut(s)	423
CviAII	CATG	1 cut(s)	479
CviJI	RGCY	3 cut(s)	20, 157, 192
CviKI_1	RGCY	3 cut(s)	20, 157, 192
DdeI	CTNAG	2 cut(s)	77, 467
DpnI	GATC	3 cut(s)	28, 75, 186
DpnII	GATC	3 cut(s)	26, 73, 184
DrdI	GACNNNNNNGTC	1 cut(s)	44
DseDI	GACNNNNNNGTC	1 cut(s)	44
EcoRII	CCWGG	1 cut(s)	238
Esp3I	CGTCTC	2 cut(s)	375, 441
FaeI	CATG	1 cut(s)	482
FaiI	YATR	5 cut(s)	36, 180, 343, 480, 508
FatI	CATG	1 cut(s)	478
FblI	GTMKAC	1 cut(s)	342
Fnu4HI	GCNGC	1 cut(s)	333
Fsp4HI	GCNGC	1 cut(s)	333
FspBI	CTAG	1 cut(s)	413
GluI	GCNGC	1 cut(s)	333
GsaI	CCCAGC	1 cut(s)	20
GsuI	CTGGAG	1 cut(s)	321
HgaI	GACGC	1 cut(s)	423
Hin1II	CATG	1 cut(s)	482
HincII	GTYRAC	1 cut(s)	418
HindII	GTYRAC	1 cut(s)	418
HinfI	GANTC	3 cut(s)	160, 372, 501
HphI	GGTGA	1 cut(s)	431
Hpy166II	GTNNAC	3 cut(s)	319, 343, 418
Hpy188I	TCNGA	1 cut(s)	289
Hpy188III	TCNNGA	3 cut(s)	233, 352, 487
Hpy8I	GTNNAC	3 cut(s)	319, 343, 418
HpyAV	CCTTC	3 cut(s)	349, 353, 419
HpyCH4III	ACNGT	2 cut(s)	46, 168
HpyCH4V	TGCA	2 cut(s)	216, 273
HpyF3I	CTNAG	2 cut(s)	77, 467
Hsp92II	CATG	1 cut(s)	482
Kzo9I	GATC	3 cut(s)	26, 73, 184
LmnI	GCTCC	1 cut(s)	340
Lsp1109I	GCAGC	1 cut(s)	319
LweI	GCATC	1 cut(s)	480
MaeI	CTAG	1 cut(s)	413
MaeIII	GTNAC	1 cut(s)	245
MalI	GATC	3 cut(s)	28, 75, 186
MboI	GATC	3 cut(s)	26, 73, 184
MboII	GAAGA	1 cut(s)	272
MluCI	AATT	2 cut(s)	145, 198
MlyI	GAGTC	1 cut(s)	510
MnlI	CCTC	1 cut(s)	21
MseI	TTAA	1 cut(s)	57
MspR9I	CCNGG	1 cut(s)	240
MvaI	CCWGG	1 cut(s)	240
NdeII	GATC	3 cut(s)	26, 73, 184
NlaIII	CATG	1 cut(s)	482
NlaIV	GGNNCC	1 cut(s)	237
PfeI	GAWTC	2 cut(s)	160, 372
PflMI	CCANNNNNTGG	1 cut(s)	23
PkrI	GCNGC	1 cut(s)	334
PleI	GAGTC	1 cut(s)	509
PpsI	GAGTC	1 cut(s)	509
Psp6I	CCWGG	1 cut(s)	238
PspFI	CCCAGC	1 cut(s)	16
PspGI	CCWGG	1 cut(s)	238
PspN4I	GGNNCC	1 cut(s)	237
PstNI	CAGNNNCTG	1 cut(s)	23
SaqAI	TTAA	1 cut(s)	57
SatI	GCNGC	1 cut(s)	333
Sau3AI	GATC	3 cut(s)	26, 73, 184
SchI	GAGTC	1 cut(s)	510
ScrFI	CCNGG	1 cut(s)	240
SetI	ASST	1 cut(s)	159
SfaNI	GCATC	1 cut(s)	480
Sse9I	AATT	2 cut(s)	145, 198
SsiI	CCGC	2 cut(s)	129, 442
SspMI	CTAG	1 cut(s)	413
StyD4I	CCNGG	1 cut(s)	238
TaaI	ACNGT	2 cut(s)	46, 168
TaqI	TCGA	2 cut(s)	72, 474
TasI	AATT	2 cut(s)	145, 198
TfiI	GAWTC	2 cut(s)	160, 372
Tru1I	TTAA	1 cut(s)	57
Tru9I	TTAA	1 cut(s)	57
TscAI	CASTG	2 cut(s)	28, 398
TseI	GCWGC	1 cut(s)	332
TspGWI	ACGGA	1 cut(s)	336
TspRI	CASTG	2 cut(s)	28, 398
Van91I	CCANNNNNTGG	1 cut(s)	23
XapI	RAATTY	1 cut(s)	198
XmiI	GTMKAC	1 cut(s)	342
XspI	CTAG	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.