Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0002888

Physical Location & Seq

Genomic Coordinates Forward (+)

19987825 .. 19990110

Gene Structure 2286 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1081600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGTGCCAATGTTGCACAGGTGGTACTTCAGAGTTGGGACCAGATTGTAAAACGATAAGCCAACCCAATGAGTTCCCAACTGGAACAATTTACGAATACACTGTCAAGGATGTTAAAGGAAAGGATGTGAATCTTAGCATGTACCGGGGAAAGGTTCTAGTGATTGTTAATGTTGCTTCCCAATGTGGATTGACGGATGAAAACTACACGGAGTTTAATCAACTATATCAAAAGTATAAAGATAAAGGCTTGGAGATTCTGGCATTTCCGTGTAACCAGTTTGCTGCTCAGGAACCAGGAAGTAATGAACAGATTCAAGAGTTTGCCTGCACTCGTTTCAAAACAGCATTCCCAATTTTTAACAAGATTGAAGTAAACGGGTTTAATACTGCTCCGTTGTACAAGTTCTTGAAGTTAGGCAAATGGGGATTCTTCGATGACGATATCCAGTGGAACTTTGCTAAGTTTCTTGTTGACAAGCAGGGGAAACCTGTCGGTCGTTATTACCCAACAACTTCACCCCTTAGCCTTCAGGTGAAAACCTGGACGTCGAATTCTCAAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0016209 GO:0016491 GO:0016684 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00480 ko00590 ko04918 map00480 map00590 map04918

Pfam Domains

Protein Families

GSHPx

Protein Analysis

189

Amino Acids

21.32

Weight (kDa)

7.46

Isoelectric Point (pI)

25.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Redoxin	PF08534	25 - 89	1.4e-06	Redoxin
GSHPx	PF00255	30 - 138	1.1e-42	Glutathione peroxidase
AhpC-TSA	PF00578	32 - 94	4.6e-08	AhpC/TSA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63460
fragaria_vesca	FvH4_5g02170 FvH4_5g02170 FvH4_5g02171
malus_domestica	MD06G1081400.v1.1 MD06G1081500.v1.1 MD06G1081600.v1.1 MD14G1103300.v1.1 MD14G1103400.v1.1
prunus_persica	Prupe.5G098500_v2.0.a1 Prupe.5G098600_v2.0.a1 Prupe.5G098600_v2.0.a1 Prupe.5G098700_v2.0.a1
pyrus_communis	pycom06g07840 pycom14g09920 pycom14g09930
rosa_chinensis	RchiOBHm_Chr6g0245721 RchiOBHm_Chr7g0197971 RchiOBHm_Chr7g0197981
rosa_laevigata	RLG00000003896 RLG00000003897
rosa_multiflora	Rmu_co8195742.1_g000001 Rmu_sc0001082.1_g000007 Rmu_sc0025270.1_g000001
rosa_roxburghii	Rroxscaffold_3G00258040 Rroxscaffold_3G00258050
rosa_rugosa	Rorug02G0237300 Rorug07G0045000
rosa_samantha	Rh7AG168400 Rh7BG171400 Rh7BG171500 Rh7CG177900 Rh7CG178000 Rh7CG467800 Rh7DG170500 Rh7DG170600
rosa_wichuraiana	Rw7G014710 Rw7G014720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	551
AcsI	RAATTY	1 cut(s)	553
AcuI	CTGAAG	2 cut(s)	12, 515
AcyI	GRCGYC	1 cut(s)	548
AfaI	GTAC	3 cut(s)	25, 143, 401
AfiI	CCNNNNNNNGG	1 cut(s)	151
AgsI	TTSAA	4 cut(s)	317, 340, 371, 412
AjnI	CCWGG	2 cut(s)	295, 542
ApeKI	GCWGC	1 cut(s)	284
ApoI	RAATTY	1 cut(s)	553
ArsI	GACNNNNNNTTYG	2 cut(s)	87, 119
Asp700I	GAANNNNTTC	1 cut(s)	312
AspS9I	GGNCC	1 cut(s)	38
AsuC2I	CCSGG	1 cut(s)	146
AsuHPI	GGTGA	2 cut(s)	510, 547
AvaII	GGWCC	1 cut(s)	38
BbvI	GCAGC	1 cut(s)	271
BciT130I	CCWGG	2 cut(s)	297, 544
BcnI	CCSGG	1 cut(s)	146
BfaI	CTAG	1 cut(s)	158
BisI	GCNGC	1 cut(s)	285
BlsI	GCNGC	1 cut(s)	286
Bme1390I	CCNGG	3 cut(s)	146, 297, 544
Bme18I	GGWCC	1 cut(s)	38
BmgT120I	GGNCC	1 cut(s)	38
BmiI	GGNNCC	2 cut(s)	39, 294
BmrFI	CCNGG	3 cut(s)	146, 297, 544
Bpu10I	CCTNAGC	2 cut(s)	288, 524
BpuMI	CCSGG	1 cut(s)	146
BsaBI	GATNNNNATC	1 cut(s)	129
BsaHI	GRCGYC	1 cut(s)	548
BsaJI	CCNNGG	1 cut(s)	145
Bsc4I	CCNNNNNNNGG	1 cut(s)	151
Bse1I	ACTGG	3 cut(s)	85, 277, 448
Bse8I	GATNNNNATC	1 cut(s)	129
BseBI	CCWGG	2 cut(s)	297, 544
BseDI	CCNNGG	1 cut(s)	145
BseGI	GGATG	3 cut(s)	115, 130, 202
BseJI	GATNNNNATC	1 cut(s)	129
BseLI	CCNNNNNNNGG	1 cut(s)	151
BseMII	CTCAG	1 cut(s)	302
BseNI	ACTGG	3 cut(s)	85, 277, 448
BseXI	GCAGC	1 cut(s)	271
BsgI	GTGCAG	1 cut(s)	313
Bsh1285I	CGRYCG	1 cut(s)	499
BsiEI	CGRYCG	1 cut(s)	499
BsiSI	CCGG	1 cut(s)	145
BslFI	GGGAC	1 cut(s)	51
BslI	CCNNNNNNNGG	1 cut(s)	151
BsmFI	GGGAC	1 cut(s)	51
BsmI	GAATGC	1 cut(s)	347
Bsp1407I	TGTACA	1 cut(s)	399
BspCNI	CTCAG	1 cut(s)	301
BspLI	GGNNCC	2 cut(s)	39, 294
BsrGI	TGTACA	1 cut(s)	399
BsrI	ACTGG	3 cut(s)	85, 277, 448
BssECI	CCNNGG	1 cut(s)	145
BssNI	GRCGYC	1 cut(s)	548
Bst2UI	CCWGG	2 cut(s)	297, 544
Bst4CI	ACNGT	1 cut(s)	103
BstACI	GRCGYC	1 cut(s)	548
BstAUI	TGTACA	1 cut(s)	399
BstC8I	GCNNGC	1 cut(s)	328
BstDEI	CTNAG	4 cut(s)	134, 288, 462, 524
BstF5I	GGATG	3 cut(s)	115, 130, 202
BstMCI	CGRYCG	1 cut(s)	499
BstMWI	GCNNNNNNNGC	1 cut(s)	12
BstNI	CCWGG	2 cut(s)	297, 544
BstNSI	RCATGY	1 cut(s)	142
BstSCI	CCNGG	3 cut(s)	144, 295, 542
BstV1I	GCAGC	1 cut(s)	271
BtsCI	GGATG	3 cut(s)	115, 130, 202
BtsIMutI	CAGTG	2 cut(s)	99, 455
Cac8I	GCNNGC	1 cut(s)	328
Cfr13I	GGNCC	1 cut(s)	38
Csp6I	GTAC	3 cut(s)	24, 142, 400
CviAII	CATG	1 cut(s)	139
CviJI	RGCY	3 cut(s)	60, 249, 528
CviKI_1	RGCY	3 cut(s)	60, 249, 528
CviQI	GTAC	3 cut(s)	24, 142, 400
DdeI	CTNAG	4 cut(s)	134, 288, 462, 524
Eco32I	GATATC	1 cut(s)	445
Eco47I	GGWCC	1 cut(s)	38
Eco57I	CTGAAG	2 cut(s)	12, 515
EcoRI	GAATTC	1 cut(s)	553
EcoRII	CCWGG	2 cut(s)	295, 542
EcoRV	GATATC	1 cut(s)	445
FaeI	CATG	1 cut(s)	142
FaiI	YATR	4 cut(s)	140, 226, 237, 565
FaqI	GGGAC	1 cut(s)	51
FatI	CATG	1 cut(s)	138
Fnu4HI	GCNGC	1 cut(s)	285
FokI	GGATG	3 cut(s)	122, 137, 209
Fsp4HI	GCNGC	1 cut(s)	285
FspBI	CTAG	1 cut(s)	158
GluI	GCNGC	1 cut(s)	285
HapII	CCGG	1 cut(s)	145
Hin1I	GRCGYC	1 cut(s)	548
Hin1II	CATG	1 cut(s)	142
HincII	GTYRAC	1 cut(s)	475
HindII	GTYRAC	1 cut(s)	475
HinfI	GANTC	4 cut(s)	130, 256, 313, 429
HpaII	CCGG	1 cut(s)	145
HphI	GGTGA	2 cut(s)	510, 547
Hpy166II	GTNNAC	2 cut(s)	376, 475
Hpy188I	TCNGA	1 cut(s)	31
Hpy188III	TCNNGA	3 cut(s)	290, 317, 409
Hpy8I	GTNNAC	2 cut(s)	376, 475
Hpy99I	CGWCG	1 cut(s)	553
HpyAV	CCTTC	1 cut(s)	539
HpyCH4III	ACNGT	1 cut(s)	103
HpyCH4IV	ACGT	1 cut(s)	548
HpyCH4V	TGCA	2 cut(s)	15, 330
HpyF10VI	GCNNNNNNNGC	1 cut(s)	12
HpyF3I	CTNAG	4 cut(s)	134, 288, 462, 524
HpySE526I	ACGT	1 cut(s)	548
Hsp92I	GRCGYC	1 cut(s)	548
Hsp92II	CATG	1 cut(s)	142
LmnI	GCTCC	1 cut(s)	397
Lsp1109I	GCAGC	1 cut(s)	271
MaeI	CTAG	1 cut(s)	158
MaeII	ACGT	1 cut(s)	548
MaeIII	GTNAC	1 cut(s)	272
MboII	GAAGA	1 cut(s)	424
MluCI	AATT	3 cut(s)	87, 354, 553
MroXI	GAANNNNTTC	1 cut(s)	312
MseI	TTAA	5 cut(s)	114, 168, 216, 360, 384
MslI	CAYNNNNRTG	1 cut(s)	268
MspI	CCGG	1 cut(s)	145
MspR9I	CCNGG	3 cut(s)	146, 297, 544
Mva1269I	GAATGC	1 cut(s)	347
MvaI	CCWGG	2 cut(s)	297, 544
MwoI	GCNNNNNNNGC	1 cut(s)	12
NciI	CCSGG	1 cut(s)	146
NlaIII	CATG	1 cut(s)	142
NlaIV	GGNNCC	2 cut(s)	39, 294
NspI	RCATGY	1 cut(s)	142
PctI	GAATGC	1 cut(s)	347
PdmI	GAANNNNTTC	1 cut(s)	312
PfeI	GAWTC	4 cut(s)	130, 256, 313, 429
PkrI	GCNGC	1 cut(s)	286
Psp6I	CCWGG	2 cut(s)	295, 542
PspGI	CCWGG	2 cut(s)	295, 542
PspN4I	GGNNCC	2 cut(s)	39, 294
PspPI	GGNCC	1 cut(s)	38
RsaI	GTAC	3 cut(s)	25, 143, 401
RsaNI	GTAC	3 cut(s)	24, 142, 400
RseI	CAYNNNNRTG	1 cut(s)	268
SaqAI	TTAA	5 cut(s)	114, 168, 216, 360, 384
SatI	GCNGC	1 cut(s)	285
Sau96I	GGNCC	1 cut(s)	38
ScrFI	CCNGG	3 cut(s)	146, 297, 544
SetI	ASST	6 cut(s)	22, 156, 493, 537, 545, 551
SinI	GGWCC	1 cut(s)	38
SmiMI	CAYNNNNRTG	1 cut(s)	268
Sse9I	AATT	3 cut(s)	87, 354, 553
SspMI	CTAG	1 cut(s)	158
StyD4I	CCNGG	3 cut(s)	144, 295, 542
TaaI	ACNGT	1 cut(s)	103
TaiI	ACGT	1 cut(s)	551
TaqI	TCGA	2 cut(s)	435, 551
TaqII	GACCGA	1 cut(s)	485
TasI	AATT	3 cut(s)	87, 354, 553
TatI	WGTACW	1 cut(s)	399
TfiI	GAWTC	4 cut(s)	130, 256, 313, 429
Tru1I	TTAA	5 cut(s)	114, 168, 216, 360, 384
Tru9I	TTAA	5 cut(s)	114, 168, 216, 360, 384
TscAI	CASTG	2 cut(s)	106, 455
TseI	GCWGC	1 cut(s)	284
TspDTI	ATGAA	2 cut(s)	213, 321
TspGWI	ACGGA	4 cut(s)	209, 224, 258, 384
TspRI	CASTG	2 cut(s)	106, 455
VpaK11BI	GGWCC	1 cut(s)	38
XapI	RAATTY	1 cut(s)	553
XceI	RCATGY	1 cut(s)	142
XmnI	GAANNNNTTC	1 cut(s)	312
XspI	CTAG	1 cut(s)	158
ZraI	GACGTC	1 cut(s)	549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.