Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8195742.1

Orthogroup ID

OG0002888

Physical Location & Seq

Genomic Coordinates Reverse (-)

243 .. 669

Gene Structure 427 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8195742.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 204 bp

atgattgaagtaaatggtgataactctgctccactgtacaagttcttgaagttaggcaaatggggtttctttaaagatgatattcagtggaactttaccaagtttctagttgacagagatgggaaggttgctgatcgctattaccctacaactgctgcccttagcctcgagcatggcataaagacgctgttgggagtctcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0016209 GO:0016491 GO:0016684 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00480 ko00590 ko04918 map00480 map00590 map04918

Pfam Domains

Protein Families

GSHPx

Protein Analysis

67

Amino Acids

7.64

Weight (kDa)

8.01

Isoelectric Point (pI)

-1.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63460
fragaria_vesca	FvH4_5g02170 FvH4_5g02170 FvH4_5g02171
malus_domestica	MD06G1081400.v1.1 MD06G1081500.v1.1 MD06G1081600.v1.1 MD14G1103300.v1.1 MD14G1103400.v1.1
prunus_persica	Prupe.5G098500_v2.0.a1 Prupe.5G098600_v2.0.a1 Prupe.5G098600_v2.0.a1 Prupe.5G098700_v2.0.a1
pyrus_communis	pycom06g07840 pycom14g09920 pycom14g09930
rosa_chinensis	RchiOBHm_Chr6g0245721 RchiOBHm_Chr7g0197971 RchiOBHm_Chr7g0197981
rosa_laevigata	RLG00000003896 RLG00000003897
rosa_multiflora	Rmu_co8195742.1_g000001 Rmu_sc0001082.1_g000007 Rmu_sc0025270.1_g000001
rosa_roxburghii	Rroxscaffold_3G00258040 Rroxscaffold_3G00258050
rosa_rugosa	Rorug02G0237300 Rorug07G0045000
rosa_samantha	Rh7AG168400 Rh7BG171400 Rh7BG171500 Rh7CG177900 Rh7CG178000 Rh7CG467800 Rh7DG170500 Rh7DG170600
rosa_wichuraiana	Rw7G014710 Rw7G014720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	38
AgsI	TTSAA	2 cut(s)	8, 49
Ama87I	CYCGRG	1 cut(s)	167
ApeKI	GCWGC	1 cut(s)	155
AsuHPI	GGTGA	1 cut(s)	29
AvaI	CYCGRG	1 cut(s)	167
BbvI	GCAGC	1 cut(s)	142
BccI	CCATC	1 cut(s)	113
BfaI	CTAG	1 cut(s)	107
BisI	GCNGC	1 cut(s)	156
BlsI	GCNGC	1 cut(s)	157
BmeT110I	CYCGRG	1 cut(s)	167
Bpu10I	CCTNAGC	1 cut(s)	161
BseXI	GCAGC	1 cut(s)	142
BsiHKCI	CYCGRG	1 cut(s)	167
BsoBI	CYCGRG	1 cut(s)	167
Bsp1407I	TGTACA	1 cut(s)	36
Bsp143I	GATC	1 cut(s)	133
BspHI	TCATGA	1 cut(s)	200
BsrGI	TGTACA	1 cut(s)	36
BssMI	GATC	1 cut(s)	133
Bst4CI	ACNGT	1 cut(s)	36
BstAUI	TGTACA	1 cut(s)	36
BstDEI	CTNAG	1 cut(s)	161
BstKTI	GATC	1 cut(s)	136
BstMBI	GATC	1 cut(s)	133
BstV1I	GCAGC	1 cut(s)	142
BtsIMutI	CAGTG	2 cut(s)	32, 92
CciI	TCATGA	1 cut(s)	200
CseI	GACGC	1 cut(s)	193
Csp6I	GTAC	1 cut(s)	37
CviAII	CATG	2 cut(s)	173, 201
CviJI	RGCY	1 cut(s)	165
CviKI_1	RGCY	1 cut(s)	165
CviQI	GTAC	1 cut(s)	37
DdeI	CTNAG	1 cut(s)	161
DpnI	GATC	1 cut(s)	135
DpnII	GATC	1 cut(s)	133
DraI	TTTAAA	1 cut(s)	73
Eco88I	CYCGRG	1 cut(s)	167
FaeI	CATG	2 cut(s)	176, 204
FaiI	YATR	3 cut(s)	174, 179, 202
FatI	CATG	2 cut(s)	172, 200
Fnu4HI	GCNGC	1 cut(s)	156
Fsp4HI	GCNGC	1 cut(s)	156
FspBI	CTAG	1 cut(s)	107
GluI	GCNGC	1 cut(s)	156
HgaI	GACGC	1 cut(s)	193
Hin1II	CATG	2 cut(s)	176, 204
HincII	GTYRAC	1 cut(s)	112
HindII	GTYRAC	1 cut(s)	112
HinfI	GANTC	1 cut(s)	195
HphI	GGTGA	1 cut(s)	29
Hpy166II	GTNNAC	1 cut(s)	112
Hpy188III	TCNNGA	2 cut(s)	46, 201
Hpy8I	GTNNAC	1 cut(s)	112
HpyAV	CCTTC	1 cut(s)	118
HpyCH4III	ACNGT	1 cut(s)	36
HpyF3I	CTNAG	1 cut(s)	161
Hsp92II	CATG	2 cut(s)	176, 204
Kzo9I	GATC	1 cut(s)	133
LmnI	GCTCC	1 cut(s)	34
Lsp1109I	GCAGC	1 cut(s)	142
MaeI	CTAG	1 cut(s)	107
MalI	GATC	1 cut(s)	135
MboI	GATC	1 cut(s)	133
MlyI	GAGTC	1 cut(s)	204
MnlI	CCTC	1 cut(s)	176
MseI	TTAA	1 cut(s)	72
NdeII	GATC	1 cut(s)	133
NlaIII	CATG	2 cut(s)	176, 204
PaeR7I	CTCGAG	1 cut(s)	167
PagI	TCATGA	1 cut(s)	200
PkrI	GCNGC	1 cut(s)	157
PleI	GAGTC	1 cut(s)	203
PpsI	GAGTC	1 cut(s)	203
PspXI	VCTCGAGB	1 cut(s)	167
RsaI	GTAC	1 cut(s)	38
RsaNI	GTAC	1 cut(s)	37
SaqAI	TTAA	1 cut(s)	72
SatI	GCNGC	1 cut(s)	156
Sau3AI	GATC	1 cut(s)	133
SchI	GAGTC	1 cut(s)	204
SetI	ASST	1 cut(s)	129
Sfr274I	CTCGAG	1 cut(s)	167
SgeI	CNNG	7 cut(s)	52, 58, 112, 119, 179, 181, 185
SlaI	CTCGAG	1 cut(s)	167
SmlI	CTYRAG	1 cut(s)	167
SmoI	CTYRAG	1 cut(s)	167
SspMI	CTAG	1 cut(s)	107
TaaI	ACNGT	1 cut(s)	36
TaqI	TCGA	1 cut(s)	168
TatI	WGTACW	1 cut(s)	36
Tru1I	TTAA	1 cut(s)	72
Tru9I	TTAA	1 cut(s)	72
TscAI	CASTG	2 cut(s)	39, 92
TseI	GCWGC	1 cut(s)	155
TspRI	CASTG	2 cut(s)	39, 92
XhoI	CTCGAG	1 cut(s)	167
XspI	CTAG	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.