Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001082.1

Orthogroup ID

OG0002888

Physical Location & Seq

Genomic Coordinates Forward (+)

29337 .. 34035

Gene Structure 4699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001082.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

atggcaacccaagctactgagacccccaaaacaatttatgacctcactgtcaaggatgccaagggaaatgatgtggatcttagtgtgtacaaggggaaagttctactgattgtcaatgttgcttccaaatgtggactgaccaactcgaattacacggagctgaatcaactatatcaacagtataaagaccaaggcttggagatactggcgtttccttgcaatcagtttggtgaagaggaaccaggaagtaataaagagattgaagactttgtctgcactcgtttcaaatcagaatttccaatatttgacaagattgatgtaaatggtgataatgctgctccattgtacaagttcttgaagtcaggcaaacggggagtctttggagatgacattcaatggaacttttcgaagtttctagttgacaaggatgggatagttgctcaccgctattaccctacaactgccgcccttagccttgaggaaagtgctacaaatgaaatgaagcatcagaacatagaatgttcatccatcctcggtcctgttccccaatgccataagcttcagagacagaagtctgagccctcaccaatgtcattgttaagccatggattcgagatactagcttttccttgcaatcagtttggtgcacaggaaccgggaagtaatgaagagattgaagagtttgtctgcactcgtttcaaatcagaatttccgatatttgacaagattgaagtaaatggtgataactctgctccactgtacaagttcttgaagttaggcaaatggggtttctttaaagatgatattcagtggaactttaccaagtttctagttgacagagatgggaaggttgctgatcgctattaccctacaactgctgcccttagcctcgagcatggcataaagacgctgttgggagtctcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0016209 GO:0016491 GO:0016684 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00480 ko00590 ko04918 map00480 map00590 map04918

Pfam Domains

Protein Families

GSHPx

Protein Analysis

308

Amino Acids

34.74

Weight (kDa)

5.21

Isoelectric Point (pI)

37.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63460
fragaria_vesca	FvH4_5g02170 FvH4_5g02170 FvH4_5g02171
malus_domestica	MD06G1081400.v1.1 MD06G1081500.v1.1 MD06G1081600.v1.1 MD14G1103300.v1.1 MD14G1103400.v1.1
prunus_persica	Prupe.5G098500_v2.0.a1 Prupe.5G098600_v2.0.a1 Prupe.5G098600_v2.0.a1 Prupe.5G098700_v2.0.a1
pyrus_communis	pycom06g07840 pycom14g09920 pycom14g09930
rosa_chinensis	RchiOBHm_Chr6g0245721 RchiOBHm_Chr7g0197971 RchiOBHm_Chr7g0197981
rosa_laevigata	RLG00000003896 RLG00000003897
rosa_multiflora	Rmu_co8195742.1_g000001 Rmu_sc0001082.1_g000007 Rmu_sc0025270.1_g000001
rosa_roxburghii	Rroxscaffold_3G00258040 Rroxscaffold_3G00258050
rosa_rugosa	Rorug02G0237300 Rorug07G0045000
rosa_samantha	Rh7AG168400 Rh7BG171400 Rh7BG171500 Rh7CG177900 Rh7CG178000 Rh7CG467800 Rh7DG170500 Rh7DG170600
rosa_wichuraiana	Rw7G014710 Rw7G014720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	47
AccB7I	CCANNNNNTGG	1 cut(s)	196
AciI	CCGC	2 cut(s)	445, 465
AclWI	GGATC	1 cut(s)	84
AcsI	RAATTY	2 cut(s)	293, 707
AcuI	CTGAAG	1 cut(s)	545
AfaI	GTAC	3 cut(s)	89, 347, 761
AfiI	CCNNNNNNNGG	1 cut(s)	196
AgsI	TTSAA	8 cut(s)	263, 286, 358, 395, 677, 700, 731, 772
AjnI	CCWGG	1 cut(s)	241
AluBI	AGCT	4 cut(s)	14, 160, 559, 623
AluI	AGCT	4 cut(s)	14, 160, 559, 623
Alw21I	GWGCWC	1 cut(s)	649
Alw26I	GTCTC	2 cut(s)	14, 559
Alw44I	GTGCAC	1 cut(s)	645
AlwI	GGATC	1 cut(s)	84
Ama87I	CYCGRG	1 cut(s)	890
ApaLI	GTGCAC	1 cut(s)	645
ApeKI	GCWGC	2 cut(s)	335, 878
ApoI	RAATTY	2 cut(s)	293, 707
ArsI	GACNNNNNNTTYG	2 cut(s)	360, 392
AspS9I	GGNCC	1 cut(s)	536
AsuC2I	CCSGG	1 cut(s)	657
AsuHPI	GGTGA	5 cut(s)	242, 338, 434, 576, 752
AsuII	TTCGAA	1 cut(s)	407
AvaI	CYCGRG	1 cut(s)	890
AvaII	GGWCC	1 cut(s)	536
BaeGI	GKGCMC	1 cut(s)	649
BaeI	ACNNNNGTAYC	2 cut(s)	194, 227
BanII	GRGCYC	1 cut(s)	582
BbsI	GAAGAC	1 cut(s)	270
Bbv12I	GWGCWC	1 cut(s)	649
BbvI	GCAGC	2 cut(s)	322, 865
BccI	CCATC	3 cut(s)	422, 536, 836
BciT130I	CCWGG	1 cut(s)	243
BcnI	CCSGG	1 cut(s)	657
BcoDI	GTCTC	2 cut(s)	14, 559
BfaI	CTAG	3 cut(s)	416, 620, 830
BisI	GCNGC	3 cut(s)	336, 465, 879
BlsI	GCNGC	3 cut(s)	337, 466, 880
Bme1390I	CCNGG	2 cut(s)	243, 657
Bme18I	GGWCC	1 cut(s)	536
BmeT110I	CYCGRG	1 cut(s)	890
BmgT120I	GGNCC	1 cut(s)	536
BmiI	GGNNCC	2 cut(s)	240, 654
BmrFI	CCNGG	2 cut(s)	243, 657
BmsI	GCATC	2 cut(s)	46, 514
BoxI	GACNNNNGTC	1 cut(s)	571
BpiI	GAAGAC	1 cut(s)	270
Bpu10I	CCTNAGC	2 cut(s)	470, 884
Bpu14I	TTCGAA	1 cut(s)	407
BpuEI	CTTGAG	1 cut(s)	497
BpuMI	CCSGG	1 cut(s)	657
BsaBI	GATNNNNATC	1 cut(s)	75
BsaI	GGTCTC	1 cut(s)	14
BsaJI	CCNNGG	4 cut(s)	60, 190, 532, 604
Bsc4I	CCNNNNNNNGG	1 cut(s)	196
Bse1I	ACTGG	1 cut(s)	210
Bse8I	GATNNNNATC	1 cut(s)	75
BseBI	CCWGG	1 cut(s)	243
BseDI	CCNNGG	4 cut(s)	60, 190, 532, 604
BseGI	GGATG	4 cut(s)	61, 433, 524, 528
BseJI	GATNNNNATC	1 cut(s)	75
BseLI	CCNNNNNNNGG	1 cut(s)	196
BseMII	CTCAG	2 cut(s)	9, 567
BseNI	ACTGG	1 cut(s)	210
BseSI	GKGCMC	1 cut(s)	649
BseXI	GCAGC	2 cut(s)	322, 865
BsgI	GTGCAG	2 cut(s)	259, 673
BsiHKAI	GWGCWC	1 cut(s)	649
BsiHKCI	CYCGRG	1 cut(s)	890
BsiSI	CCGG	1 cut(s)	656
BslI	CCNNNNNNNGG	1 cut(s)	196
BsmAI	GTCTC	2 cut(s)	14, 559
Bso31I	GGTCTC	1 cut(s)	14
BsoBI	CYCGRG	1 cut(s)	890
Bsp119I	TTCGAA	1 cut(s)	407
Bsp1286I	GDGCHC	2 cut(s)	582, 649
Bsp1407I	TGTACA	3 cut(s)	87, 345, 759
Bsp143I	GATC	2 cut(s)	76, 856
Bsp19I	CCATGG	1 cut(s)	604
BspACI	CCGC	2 cut(s)	445, 465
BspCNI	CTCAG	2 cut(s)	10, 568
BspHI	TCATGA	1 cut(s)	923
BspLI	GGNNCC	2 cut(s)	240, 654
BspPI	GGATC	1 cut(s)	84
BspT104I	TTCGAA	1 cut(s)	407
BspTNI	GGTCTC	1 cut(s)	14
BsrGI	TGTACA	3 cut(s)	87, 345, 759
BsrI	ACTGG	1 cut(s)	210
BssECI	CCNNGG	4 cut(s)	60, 190, 532, 604
BssMI	GATC	2 cut(s)	76, 856
BssT1I	CCWWGG	3 cut(s)	60, 190, 604
Bst2UI	CCWGG	1 cut(s)	243
Bst4CI	ACNGT	3 cut(s)	49, 180, 759
Bst6I	CTCTTC	3 cut(s)	228, 663, 672
BstAUI	TGTACA	3 cut(s)	87, 345, 759
BstBI	TTCGAA	1 cut(s)	407
BstDEI	CTNAG	5 cut(s)	18, 80, 470, 576, 884
BstDSI	CCRYGG	1 cut(s)	604
BstF5I	GGATG	4 cut(s)	61, 433, 524, 528
BstKTI	GATC	2 cut(s)	79, 859
BstMAI	GTCTC	2 cut(s)	14, 559
BstMBI	GATC	2 cut(s)	76, 856
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	1 cut(s)	243
BstPAI	GACNNNNGTC	1 cut(s)	571
BstSCI	CCNGG	2 cut(s)	241, 655
BstSLI	GKGCMC	1 cut(s)	649
BstV1I	GCAGC	2 cut(s)	322, 865
BstV2I	GAAGAC	1 cut(s)	270
BstX2I	RGATCY	1 cut(s)	76
BstYI	RGATCY	1 cut(s)	76
BtgI	CCRYGG	1 cut(s)	604
BtsCI	GGATG	4 cut(s)	61, 433, 524, 528
BtsIMutI	CAGTG	3 cut(s)	45, 755, 815
CciI	TCATGA	1 cut(s)	923
Cfr13I	GGNCC	1 cut(s)	536
CseI	GACGC	1 cut(s)	916
Csp6I	GTAC	3 cut(s)	88, 346, 760
CviAII	CATG	3 cut(s)	605, 896, 924
CviJI	RGCY	9 cut(s)	14, 160, 195, 474, 559, 580, 603, 623, 888
CviKI_1	RGCY	9 cut(s)	14, 160, 195, 474, 559, 580, 603, 623, 888
CviQI	GTAC	3 cut(s)	88, 346, 760
DdeI	CTNAG	5 cut(s)	18, 80, 470, 576, 884
DpnI	GATC	2 cut(s)	78, 858
DpnII	GATC	2 cut(s)	76, 856
DraI	TTTAAA	1 cut(s)	796
DrdI	GACNNNNNNGTC	1 cut(s)	47
DseDI	GACNNNNNNGTC	1 cut(s)	47
Eam1104I	CTCTTC	3 cut(s)	228, 663, 672
EarI	CTCTTC	3 cut(s)	228, 663, 672
Eco130I	CCWWGG	3 cut(s)	60, 190, 604
Eco24I	GRGCYC	1 cut(s)	582
Eco31I	GGTCTC	1 cut(s)	14
Eco47I	GGWCC	1 cut(s)	536
Eco57I	CTGAAG	1 cut(s)	545
Eco88I	CYCGRG	1 cut(s)	890
EcoRII	CCWGG	1 cut(s)	241
EcoT14I	CCWWGG	3 cut(s)	60, 190, 604
EcoT38I	GRGCYC	1 cut(s)	582
ErhI	CCWWGG	3 cut(s)	60, 190, 604
FaeI	CATG	3 cut(s)	608, 899, 927
FaiI	YATR	9 cut(s)	39, 172, 183, 515, 555, 606, 897, 902, 925
FatI	CATG	3 cut(s)	604, 895, 923
Fnu4HI	GCNGC	3 cut(s)	336, 465, 879
FokI	GGATG	4 cut(s)	68, 440, 511, 515
FriOI	GRGCYC	1 cut(s)	582
Fsp4HI	GCNGC	3 cut(s)	336, 465, 879
FspBI	CTAG	3 cut(s)	416, 620, 830
GluI	GCNGC	3 cut(s)	336, 465, 879
HapII	CCGG	1 cut(s)	656
HgaI	GACGC	1 cut(s)	916
Hin1II	CATG	3 cut(s)	608, 899, 927
HincII	GTYRAC	2 cut(s)	421, 835
HindII	GTYRAC	2 cut(s)	421, 835
HindIII	AAGCTT	1 cut(s)	557
HinfI	GANTC	4 cut(s)	163, 375, 609, 918
HpaII	CCGG	1 cut(s)	656
HphI	GGTGA	5 cut(s)	242, 338, 434, 576, 752
Hpy166II	GTNNAC	5 cut(s)	88, 134, 421, 647, 835
Hpy188I	TCNGA	6 cut(s)	292, 510, 564, 577, 706, 714
Hpy188III	TCNNGA	4 cut(s)	355, 613, 769, 924
Hpy8I	GTNNAC	5 cut(s)	88, 134, 421, 647, 835
HpyAV	CCTTC	1 cut(s)	841
HpyCH4III	ACNGT	3 cut(s)	49, 180, 759
HpyCH4V	TGCA	5 cut(s)	219, 276, 633, 647, 690
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	5 cut(s)	18, 80, 470, 576, 884
Hsp92II	CATG	3 cut(s)	608, 899, 927
Kzo9I	GATC	2 cut(s)	76, 856
LmnI	GCTCC	3 cut(s)	157, 343, 757
LpnPI	CCDG	7 cut(s)	191, 228, 255, 348, 552, 635, 669
Lsp1109I	GCAGC	2 cut(s)	322, 865
LweI	GCATC	2 cut(s)	46, 514
MaeI	CTAG	3 cut(s)	416, 620, 830
MalI	GATC	2 cut(s)	78, 858
MboI	GATC	2 cut(s)	76, 856
MboII	GAAGA	4 cut(s)	245, 275, 680, 689
MflI	RGATCY	1 cut(s)	76
MhlI	GDGCHC	2 cut(s)	582, 649
MluCI	AATT	4 cut(s)	33, 148, 293, 707
MlyI	GAGTC	2 cut(s)	384, 927
MnlI	CCTC	6 cut(s)	53, 229, 472, 542, 592, 899
MseI	TTAA	2 cut(s)	599, 795
MspI	CCGG	1 cut(s)	656
MspR9I	CCNGG	2 cut(s)	243, 657
MvaI	CCWGG	1 cut(s)	243
MwoI	GCNNNNNNNGC	1 cut(s)	11
NciI	CCSGG	1 cut(s)	657
NcoI	CCATGG	1 cut(s)	604
NdeII	GATC	2 cut(s)	76, 856
NlaIII	CATG	3 cut(s)	608, 899, 927
NlaIV	GGNNCC	2 cut(s)	240, 654
NspV	TTCGAA	1 cut(s)	407
PaeR7I	CTCGAG	1 cut(s)	890
PagI	TCATGA	1 cut(s)	923
PfeI	GAWTC	2 cut(s)	163, 609
PflFI	GACNNNGTC	1 cut(s)	269
PflMI	CCANNNNNTGG	1 cut(s)	196
PkrI	GCNGC	3 cut(s)	337, 466, 880
PleI	GAGTC	2 cut(s)	383, 926
PpsI	GAGTC	2 cut(s)	383, 926
PshAI	GACNNNNGTC	1 cut(s)	571
Psp6I	CCWGG	1 cut(s)	241
PspGI	CCWGG	1 cut(s)	241
PspN4I	GGNNCC	2 cut(s)	240, 654
PspPI	GGNCC	1 cut(s)	536
PspXI	VCTCGAGB	1 cut(s)	890
PsuI	RGATCY	1 cut(s)	76
PsyI	GACNNNGTC	1 cut(s)	269
RsaI	GTAC	3 cut(s)	89, 347, 761
RsaNI	GTAC	3 cut(s)	88, 346, 760
SaqAI	TTAA	2 cut(s)	599, 795
SatI	GCNGC	3 cut(s)	336, 465, 879
Sau3AI	GATC	2 cut(s)	76, 856
Sau96I	GGNCC	1 cut(s)	536
SchI	GAGTC	2 cut(s)	384, 927
ScrFI	CCNGG	2 cut(s)	243, 657
SduI	GDGCHC	2 cut(s)	582, 649
SetI	ASST	6 cut(s)	16, 45, 162, 561, 625, 852
SfaNI	GCATC	2 cut(s)	46, 514
Sfr274I	CTCGAG	1 cut(s)	890
SfuI	TTCGAA	1 cut(s)	407
SinI	GGWCC	1 cut(s)	536
SlaI	CTCGAG	1 cut(s)	890
SmlI	CTYRAG	2 cut(s)	476, 890
SmoI	CTYRAG	2 cut(s)	476, 890
Sse9I	AATT	4 cut(s)	33, 148, 293, 707
SsiI	CCGC	2 cut(s)	445, 465
SspI	AATATT	1 cut(s)	303
SspMI	CTAG	3 cut(s)	416, 620, 830
StyD4I	CCNGG	2 cut(s)	241, 655
StyI	CCWWGG	3 cut(s)	60, 190, 604
TaaI	ACNGT	3 cut(s)	49, 180, 759
TaqI	TCGA	4 cut(s)	146, 407, 612, 891
TaqII	GACCGA	1 cut(s)	524
TasI	AATT	4 cut(s)	33, 148, 293, 707
TatI	WGTACW	3 cut(s)	87, 345, 759
TauI	GCSGC	1 cut(s)	467
TfiI	GAWTC	2 cut(s)	163, 609
Tru1I	TTAA	2 cut(s)	599, 795
Tru9I	TTAA	2 cut(s)	599, 795
TscAI	CASTG	3 cut(s)	52, 762, 815
TseI	GCWGC	2 cut(s)	335, 878
TspDTI	ATGAA	4 cut(s)	510, 513, 515, 681
TspGWI	ACGGA	1 cut(s)	170
TspRI	CASTG	3 cut(s)	52, 762, 815
Tth111I	GACNNNGTC	1 cut(s)	269
Van91I	CCANNNNNTGG	1 cut(s)	196
VneI	GTGCAC	1 cut(s)	645
VpaK11BI	GGWCC	1 cut(s)	536
XapI	RAATTY	2 cut(s)	293, 707
XhoI	CTCGAG	1 cut(s)	890
XspI	CTAG	3 cut(s)	416, 620, 830

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.