Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0002888

Physical Location & Seq

Genomic Coordinates Reverse (-)

15254226 .. 15256719

Gene Structure 2494 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG170500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGCGACCACTGAGGCCCCAAAGACGATCTACGACTTCACTGTCAAGGATGCTAAGGGGAATGATGTGGATCTTAGCGTTTACAAGGGAAAAGTTCTGCTCATTGTCAATGTTGCTTCCAAATGTGGACTGACAAACTCAAACTACGCGGAGCTGAATCAACTATATGAAAAGTATAAAGATCAAGGATTCGAGATACTGGCTTTTCCTTGCAATCAGTTTGGTGCACAGGAACCGGGAAGTAATGAAGAGATTGAAGAGTTTGTCTGCACTCGTTTCAAATCAGAATTTCCGATATTTGACAAGATTGAAGTAAATGGTGATAACTCTGCCCCACTGTACAAGTTCTTGAAGTTAGGCAAATGGGGTTTCTTTAAAGATGATATTCAGTGGAACTTTACCAAGTTTCTAGTTGACAGAGATGGGAAAGTTGCTGATCGCTATTACCCTACAACTGCTGCCCTTAGCCTCGAGGTAAAACCATATGTCTGGTTTTTTATTTTAGTTTTGTTGTGTTGCCTGTGCTGTTTGGTGTGGTTGATCGATCATGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0016209 GO:0016491 GO:0016684 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00480 ko00590 ko04918 map00480 map00590 map04918

Pfam Domains

Protein Families

GSHPx

Protein Analysis

184

Amino Acids

21.14

Weight (kDa)

4.94

Isoelectric Point (pI)

23.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Redoxin	PF08534	9 - 69	4.8e-07	Redoxin
GSHPx	PF00255	10 - 118	1.3e-45	Glutathione peroxidase
AhpC-TSA	PF00578	10 - 72	1.2e-08	AhpC/TSA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63460
fragaria_vesca	FvH4_5g02170 FvH4_5g02170 FvH4_5g02171
malus_domestica	MD06G1081400.v1.1 MD06G1081500.v1.1 MD06G1081600.v1.1 MD14G1103300.v1.1 MD14G1103400.v1.1
prunus_persica	Prupe.5G098500_v2.0.a1 Prupe.5G098600_v2.0.a1 Prupe.5G098600_v2.0.a1 Prupe.5G098700_v2.0.a1
pyrus_communis	pycom06g07840 pycom14g09920 pycom14g09930
rosa_chinensis	RchiOBHm_Chr6g0245721 RchiOBHm_Chr7g0197971 RchiOBHm_Chr7g0197981
rosa_laevigata	RLG00000003896 RLG00000003897
rosa_multiflora	Rmu_co8195742.1_g000001 Rmu_sc0001082.1_g000007 Rmu_sc0025270.1_g000001
rosa_roxburghii	Rroxscaffold_3G00258040 Rroxscaffold_3G00258050
rosa_rugosa	Rorug02G0237300 Rorug07G0045000
rosa_samantha	Rh7AG168400 Rh7BG171400 Rh7BG171500 Rh7CG177900 Rh7CG178000 Rh7CG467800 Rh7DG170500 Rh7DG170600
rosa_wichuraiana	Rw7G014710 Rw7G014720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	41
AbsI	CCTCGAGG	1 cut(s)	470
AccII	CGCG	1 cut(s)	149
AciI	CCGC	1 cut(s)	149
AclWI	GGATC	1 cut(s)	78
AcsI	RAATTY	1 cut(s)	287
AfaI	GTAC	1 cut(s)	341
AgsI	TTSAA	4 cut(s)	257, 280, 311, 352
AluBI	AGCT	1 cut(s)	154
AluI	AGCT	1 cut(s)	154
Alw21I	GWGCWC	1 cut(s)	229
Alw44I	GTGCAC	1 cut(s)	225
AlwI	GGATC	1 cut(s)	78
Ama87I	CYCGRG	1 cut(s)	470
AoxI	GGCC	1 cut(s)	15
ApaLI	GTGCAC	1 cut(s)	225
ApeKI	GCWGC	1 cut(s)	458
ApoI	RAATTY	1 cut(s)	287
AspS9I	GGNCC	1 cut(s)	16
AsuC2I	CCSGG	1 cut(s)	237
AsuHPI	GGTGA	1 cut(s)	332
AvaI	CYCGRG	1 cut(s)	470
BaeGI	GKGCMC	1 cut(s)	229
Bbv12I	GWGCWC	1 cut(s)	229
BbvI	GCAGC	1 cut(s)	445
BccI	CCATC	1 cut(s)	416
BcnI	CCSGG	1 cut(s)	237
BfaI	CTAG	1 cut(s)	410
BisI	GCNGC	1 cut(s)	459
BlsI	GCNGC	1 cut(s)	460
Bme1390I	CCNGG	1 cut(s)	237
BmeT110I	CYCGRG	1 cut(s)	470
BmgT120I	GGNCC	1 cut(s)	16
BmiI	GGNNCC	2 cut(s)	18, 234
BmrFI	CCNGG	1 cut(s)	237
BmsI	GCATC	1 cut(s)	40
Bpu10I	CCTNAGC	2 cut(s)	54, 464
BpuMI	CCSGG	1 cut(s)	237
Bsa29I	ATCGAT	1 cut(s)	543
BsaBI	GATNNNNATC	1 cut(s)	69
Bse1I	ACTGG	1 cut(s)	204
Bse8I	GATNNNNATC	1 cut(s)	69
BseCI	ATCGAT	1 cut(s)	543
BseGI	GGATG	1 cut(s)	55
BseJI	GATNNNNATC	1 cut(s)	69
BseNI	ACTGG	1 cut(s)	204
BseSI	GKGCMC	1 cut(s)	229
BseXI	GCAGC	1 cut(s)	445
BsgI	GTGCAG	1 cut(s)	253
Bsh1236I	CGCG	1 cut(s)	149
BshFI	GGCC	1 cut(s)	17
BshVI	ATCGAT	1 cut(s)	543
BsiHKAI	GWGCWC	1 cut(s)	229
BsiHKCI	CYCGRG	1 cut(s)	470
BsiSI	CCGG	1 cut(s)	236
BsnI	GGCC	1 cut(s)	17
BsoBI	CYCGRG	1 cut(s)	470
Bsp1286I	GDGCHC	1 cut(s)	229
Bsp1407I	TGTACA	1 cut(s)	339
Bsp143I	GATC	6 cut(s)	27, 70, 181, 436, 540, 544
BspACI	CCGC	1 cut(s)	149
BspANI	GGCC	1 cut(s)	17
BspCNI	CTCAG	1 cut(s)	4
BspDI	ATCGAT	1 cut(s)	543
BspFNI	CGCG	1 cut(s)	149
BspHI	TCATGA	1 cut(s)	547
BspLI	GGNNCC	2 cut(s)	18, 234
BspPI	GGATC	1 cut(s)	78
BsrGI	TGTACA	1 cut(s)	339
BsrI	ACTGG	1 cut(s)	204
BssMI	GATC	6 cut(s)	27, 70, 181, 436, 540, 544
Bst4CI	ACNGT	2 cut(s)	43, 339
Bst6I	CTCTTC	2 cut(s)	243, 252
BstAUI	TGTACA	1 cut(s)	339
BstDEI	CTNAG	4 cut(s)	12, 54, 74, 464
BstF5I	GGATG	1 cut(s)	55
BstFNI	CGCG	1 cut(s)	149
BstKTI	GATC	6 cut(s)	30, 73, 184, 439, 543, 547
BstMBI	GATC	6 cut(s)	27, 70, 181, 436, 540, 544
BstSCI	CCNGG	1 cut(s)	235
BstSLI	GKGCMC	1 cut(s)	229
BstUI	CGCG	1 cut(s)	149
BstV1I	GCAGC	1 cut(s)	445
BstX2I	RGATCY	1 cut(s)	70
BstXI	CCANNNNNNTGG	1 cut(s)	489
BstYI	RGATCY	1 cut(s)	70
Bsu15I	ATCGAT	1 cut(s)	543
BsuRI	GGCC	1 cut(s)	17
BsuTUI	ATCGAT	1 cut(s)	543
BtsCI	GGATG	1 cut(s)	55
BtsIMutI	CAGTG	4 cut(s)	9, 39, 335, 395
CciI	TCATGA	1 cut(s)	547
Cfr13I	GGNCC	1 cut(s)	16
ClaI	ATCGAT	1 cut(s)	543
Csp6I	GTAC	1 cut(s)	340
CviAII	CATG	1 cut(s)	548
CviJI	RGCY	4 cut(s)	17, 154, 203, 468
CviKI_1	RGCY	4 cut(s)	17, 154, 203, 468
CviQI	GTAC	1 cut(s)	340
DdeI	CTNAG	4 cut(s)	12, 54, 74, 464
DpnI	GATC	6 cut(s)	29, 72, 183, 438, 542, 546
DpnII	GATC	6 cut(s)	27, 70, 181, 436, 540, 544
DraI	TTTAAA	1 cut(s)	376
DrdI	GACNNNNNNGTC	1 cut(s)	41
DseDI	GACNNNNNNGTC	1 cut(s)	41
Eam1104I	CTCTTC	2 cut(s)	243, 252
EarI	CTCTTC	2 cut(s)	243, 252
Eco88I	CYCGRG	1 cut(s)	470
EcoO109I	RGGNCCY	1 cut(s)	16
FaeI	CATG	1 cut(s)	551
FaiI	YATR	6 cut(s)	166, 168, 177, 484, 486, 549
FatI	CATG	1 cut(s)	547
FauNDI	CATATG	1 cut(s)	484
Fnu4HI	GCNGC	1 cut(s)	459
FokI	GGATG	1 cut(s)	62
Fsp4HI	GCNGC	1 cut(s)	459
FspBI	CTAG	1 cut(s)	410
GluI	GCNGC	1 cut(s)	459
HaeIII	GGCC	1 cut(s)	17
HapII	CCGG	1 cut(s)	236
Hin1II	CATG	1 cut(s)	551
HincII	GTYRAC	1 cut(s)	415
HindII	GTYRAC	1 cut(s)	415
HinfI	GANTC	2 cut(s)	157, 189
HpaII	CCGG	1 cut(s)	236
HphI	GGTGA	1 cut(s)	332
Hpy166II	GTNNAC	4 cut(s)	82, 128, 227, 415
Hpy188I	TCNGA	2 cut(s)	286, 294
Hpy188III	TCNNGA	3 cut(s)	193, 349, 548
Hpy8I	GTNNAC	4 cut(s)	82, 128, 227, 415
HpyCH4III	ACNGT	2 cut(s)	43, 339
HpyCH4V	TGCA	3 cut(s)	213, 227, 270
HpyF3I	CTNAG	4 cut(s)	12, 54, 74, 464
Hsp92II	CATG	1 cut(s)	551
Kzo9I	GATC	6 cut(s)	27, 70, 181, 436, 540, 544
LmnI	GCTCC	1 cut(s)	151
LpnPI	CCDG	5 cut(s)	185, 215, 249, 475, 533
Lsp1109I	GCAGC	1 cut(s)	445
LweI	GCATC	1 cut(s)	40
MaeI	CTAG	1 cut(s)	410
MalI	GATC	6 cut(s)	29, 72, 183, 438, 542, 546
MboI	GATC	6 cut(s)	27, 70, 181, 436, 540, 544
MboII	GAAGA	2 cut(s)	260, 269
MflI	RGATCY	1 cut(s)	70
MhlI	GDGCHC	1 cut(s)	229
MluCI	AATT	1 cut(s)	287
MnlI	CCTC	3 cut(s)	7, 466, 479
MseI	TTAA	1 cut(s)	375
MspI	CCGG	1 cut(s)	236
MspR9I	CCNGG	1 cut(s)	237
MvnI	CGCG	1 cut(s)	149
NciI	CCSGG	1 cut(s)	237
NdeI	CATATG	1 cut(s)	484
NdeII	GATC	6 cut(s)	27, 70, 181, 436, 540, 544
NlaIII	CATG	1 cut(s)	551
NlaIV	GGNNCC	2 cut(s)	18, 234
PaeR7I	CTCGAG	1 cut(s)	470
PagI	TCATGA	1 cut(s)	547
PfeI	GAWTC	2 cut(s)	157, 189
PkrI	GCNGC	1 cut(s)	460
PspN4I	GGNNCC	2 cut(s)	18, 234
PspPI	GGNCC	1 cut(s)	16
PspXI	VCTCGAGB	1 cut(s)	470
PsuI	RGATCY	1 cut(s)	70
RsaI	GTAC	1 cut(s)	341
RsaNI	GTAC	1 cut(s)	340
SaqAI	TTAA	1 cut(s)	375
SatI	GCNGC	1 cut(s)	459
Sau3AI	GATC	6 cut(s)	27, 70, 181, 436, 540, 544
Sau96I	GGNCC	1 cut(s)	16
ScrFI	CCNGG	1 cut(s)	237
SduI	GDGCHC	1 cut(s)	229
SetI	ASST	2 cut(s)	156, 477
SfaNI	GCATC	1 cut(s)	40
Sfr274I	CTCGAG	1 cut(s)	470
SlaI	CTCGAG	1 cut(s)	470
SmlI	CTYRAG	1 cut(s)	470
SmoI	CTYRAG	1 cut(s)	470
Sse9I	AATT	1 cut(s)	287
SsiI	CCGC	1 cut(s)	149
SspMI	CTAG	1 cut(s)	410
StyD4I	CCNGG	1 cut(s)	235
TaaI	ACNGT	2 cut(s)	43, 339
TaqI	TCGA	3 cut(s)	192, 471, 543
TasI	AATT	1 cut(s)	287
TatI	WGTACW	1 cut(s)	339
TfiI	GAWTC	2 cut(s)	157, 189
Tru1I	TTAA	1 cut(s)	375
Tru9I	TTAA	1 cut(s)	375
TscAI	CASTG	4 cut(s)	16, 46, 342, 395
TseI	GCWGC	1 cut(s)	458
TspDTI	ATGAA	2 cut(s)	183, 261
TspRI	CASTG	4 cut(s)	16, 46, 342, 395
VneI	GTGCAC	1 cut(s)	225
XapI	RAATTY	1 cut(s)	287
XhoI	CTCGAG	1 cut(s)	470
XspI	CTAG	1 cut(s)	410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.