Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0002888

Physical Location & Seq

Genomic Coordinates Reverse (-)

15257780 .. 15259983

Gene Structure 2204 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG170600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGCAACCCAAGTTACTGAGACCCCCAAAACAATTTATGACCTCACTGTCAAGGATGCCAAGGGAAATGATGTGGATCTTAGTGTGTACAAGGGGAAAGTTCTACTGATTGTCAATGTTGCTTCCAAATGTGGACTGACCAACTCGAATTACACGGAGCTGAATCAACTATATCAACAGTATAAAGACCAAGGCTTGGAGATACTGGCGTTTCCTTGCAATCAGTTTGGTGAAGAGGAACCAGGAAGTAATAAAGAGATTGAAGACTTTGTCTGCACTCGTTTCAAATCAGAATTTCCAATATTTGACAAGGTAAATCCTGAAAATTATGTTGCATTCACTTTCCCACAGCTCACTCCTATTCTACTTTTAGGCCAGGCACAAGGTGTTTCAACCATAAGCTCCTCTGTAGTCTTTGTCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0016209 GO:0016491 GO:0016684 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00480 ko00590 ko04918 map00480 map00590 map04918

Pfam Domains

Protein Families

GSHPx

Protein Analysis

141

Amino Acids

15.71

Weight (kDa)

4.69

Isoelectric Point (pI)

33.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GSHPx	PF00255	12 - 106	9.9e-37	Glutathione peroxidase
AhpC-TSA	PF00578	12 - 74	8.1e-08	AhpC/TSA family
Redoxin	PF08534	14 - 70	4.7e-06	Redoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0002888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63460
fragaria_vesca	FvH4_5g02170 FvH4_5g02170 FvH4_5g02171
malus_domestica	MD06G1081400.v1.1 MD06G1081500.v1.1 MD06G1081600.v1.1 MD14G1103300.v1.1 MD14G1103400.v1.1
prunus_persica	Prupe.5G098500_v2.0.a1 Prupe.5G098600_v2.0.a1 Prupe.5G098600_v2.0.a1 Prupe.5G098700_v2.0.a1
pyrus_communis	pycom06g07840 pycom14g09920 pycom14g09930
rosa_chinensis	RchiOBHm_Chr6g0245721 RchiOBHm_Chr7g0197971 RchiOBHm_Chr7g0197981
rosa_laevigata	RLG00000003896 RLG00000003897
rosa_multiflora	Rmu_co8195742.1_g000001 Rmu_sc0001082.1_g000007 Rmu_sc0025270.1_g000001
rosa_roxburghii	Rroxscaffold_3G00258040 Rroxscaffold_3G00258050
rosa_rugosa	Rorug02G0237300 Rorug07G0045000
rosa_samantha	Rh7AG168400 Rh7BG171400 Rh7BG171500 Rh7CG177900 Rh7CG178000 Rh7CG467800 Rh7DG170500 Rh7DG170600
rosa_wichuraiana	Rw7G014710 Rw7G014720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	47
AccB7I	CCANNNNNTGG	1 cut(s)	196
AclWI	GGATC	1 cut(s)	84
AcsI	RAATTY	1 cut(s)	293
AdeI	CACNNNGTG	1 cut(s)	386
AfaI	GTAC	1 cut(s)	89
AfiI	CCNNNNNNNGG	1 cut(s)	196
AgsI	TTSAA	3 cut(s)	263, 286, 393
AjnI	CCWGG	2 cut(s)	241, 375
AluBI	AGCT	3 cut(s)	160, 352, 402
AluI	AGCT	3 cut(s)	160, 352, 402
Alw26I	GTCTC	1 cut(s)	14
AlwI	GGATC	1 cut(s)	84
AoxI	GGCC	1 cut(s)	373
ApoI	RAATTY	1 cut(s)	293
AsuHPI	GGTGA	1 cut(s)	242
BaeI	ACNNNNGTAYC	2 cut(s)	194, 227
BbsI	GAAGAC	1 cut(s)	270
BciT130I	CCWGG	2 cut(s)	243, 377
BcoDI	GTCTC	1 cut(s)	14
BfmI	CTRYAG	1 cut(s)	408
Bme1390I	CCNGG	2 cut(s)	243, 377
BmiI	GGNNCC	1 cut(s)	240
BmrFI	CCNGG	2 cut(s)	243, 377
BmsI	GCATC	1 cut(s)	46
BpiI	GAAGAC	1 cut(s)	270
BsaBI	GATNNNNATC	1 cut(s)	75
BsaI	GGTCTC	1 cut(s)	14
BsaJI	CCNNGG	2 cut(s)	60, 190
Bsc4I	CCNNNNNNNGG	1 cut(s)	196
Bse1I	ACTGG	1 cut(s)	210
Bse8I	GATNNNNATC	1 cut(s)	75
BseBI	CCWGG	2 cut(s)	243, 377
BseDI	CCNNGG	2 cut(s)	60, 190
BseGI	GGATG	1 cut(s)	61
BseJI	GATNNNNATC	1 cut(s)	75
BseLI	CCNNNNNNNGG	1 cut(s)	196
BseMII	CTCAG	1 cut(s)	9
BseNI	ACTGG	1 cut(s)	210
BseRI	GAGGAG	1 cut(s)	394
BsgI	GTGCAG	1 cut(s)	259
BshFI	GGCC	1 cut(s)	375
BslI	CCNNNNNNNGG	1 cut(s)	196
BsmAI	GTCTC	1 cut(s)	14
BsmI	GAATGC	1 cut(s)	335
BsnI	GGCC	1 cut(s)	375
Bso31I	GGTCTC	1 cut(s)	14
Bsp1407I	TGTACA	1 cut(s)	87
Bsp143I	GATC	1 cut(s)	76
BspANI	GGCC	1 cut(s)	375
BspCNI	CTCAG	1 cut(s)	10
BspLI	GGNNCC	1 cut(s)	240
BspPI	GGATC	1 cut(s)	84
BspTNI	GGTCTC	1 cut(s)	14
BsrGI	TGTACA	1 cut(s)	87
BsrI	ACTGG	1 cut(s)	210
BssECI	CCNNGG	2 cut(s)	60, 190
BssMI	GATC	1 cut(s)	76
BssT1I	CCWWGG	2 cut(s)	60, 190
Bst2UI	CCWGG	2 cut(s)	243, 377
Bst4CI	ACNGT	2 cut(s)	49, 180
Bst6I	CTCTTC	1 cut(s)	228
BstAUI	TGTACA	1 cut(s)	87
BstDEI	CTNAG	2 cut(s)	18, 80
BstF5I	GGATG	1 cut(s)	61
BstKTI	GATC	1 cut(s)	79
BstMAI	GTCTC	1 cut(s)	14
BstMBI	GATC	1 cut(s)	76
BstNI	CCWGG	2 cut(s)	243, 377
BstSCI	CCNGG	2 cut(s)	241, 375
BstSFI	CTRYAG	1 cut(s)	408
BstV2I	GAAGAC	1 cut(s)	270
BstX2I	RGATCY	1 cut(s)	76
BstYI	RGATCY	1 cut(s)	76
BsuRI	GGCC	1 cut(s)	375
BtsCI	GGATG	1 cut(s)	61
BtsIMutI	CAGTG	1 cut(s)	45
Csp6I	GTAC	1 cut(s)	88
CviJI	RGCY	5 cut(s)	160, 195, 352, 375, 402
CviKI_1	RGCY	5 cut(s)	160, 195, 352, 375, 402
CviQI	GTAC	1 cut(s)	88
DdeI	CTNAG	2 cut(s)	18, 80
DpnI	GATC	1 cut(s)	78
DpnII	GATC	1 cut(s)	76
DraIII	CACNNNGTG	1 cut(s)	386
DrdI	GACNNNNNNGTC	1 cut(s)	47
DseDI	GACNNNNNNGTC	1 cut(s)	47
Eam1104I	CTCTTC	1 cut(s)	228
EarI	CTCTTC	1 cut(s)	228
Eco130I	CCWWGG	2 cut(s)	60, 190
Eco31I	GGTCTC	1 cut(s)	14
EcoRII	CCWGG	2 cut(s)	241, 375
EcoT14I	CCWWGG	2 cut(s)	60, 190
ErhI	CCWWGG	2 cut(s)	60, 190
FaiI	YATR	5 cut(s)	39, 172, 183, 330, 398
FokI	GGATG	1 cut(s)	68
HaeIII	GGCC	1 cut(s)	375
HinfI	GANTC	1 cut(s)	163
HphI	GGTGA	1 cut(s)	242
Hpy166II	GTNNAC	2 cut(s)	88, 134
Hpy188I	TCNGA	1 cut(s)	292
Hpy188III	TCNNGA	1 cut(s)	320
Hpy8I	GTNNAC	2 cut(s)	88, 134
HpyCH4III	ACNGT	2 cut(s)	49, 180
HpyCH4V	TGCA	3 cut(s)	219, 276, 335
HpyF3I	CTNAG	2 cut(s)	18, 80
Kzo9I	GATC	1 cut(s)	76
LmnI	GCTCC	2 cut(s)	157, 407
LpnPI	CCDG	6 cut(s)	191, 228, 255, 333, 362, 389
LweI	GCATC	1 cut(s)	46
MaeIII	GTNAC	1 cut(s)	13
MalI	GATC	1 cut(s)	78
MboI	GATC	1 cut(s)	76
MboII	GAAGA	2 cut(s)	245, 275
MflI	RGATCY	1 cut(s)	76
MluCI	AATT	4 cut(s)	33, 148, 293, 325
MnlI	CCTC	3 cut(s)	53, 229, 415
MspR9I	CCNGG	2 cut(s)	243, 377
Mva1269I	GAATGC	1 cut(s)	335
MvaI	CCWGG	2 cut(s)	243, 377
NdeII	GATC	1 cut(s)	76
NlaIV	GGNNCC	1 cut(s)	240
PctI	GAATGC	1 cut(s)	335
PfeI	GAWTC	1 cut(s)	163
PflFI	GACNNNGTC	1 cut(s)	269
PflMI	CCANNNNNTGG	1 cut(s)	196
Psp6I	CCWGG	2 cut(s)	241, 375
PspGI	CCWGG	2 cut(s)	241, 375
PspN4I	GGNNCC	1 cut(s)	240
PsuI	RGATCY	1 cut(s)	76
PsyI	GACNNNGTC	1 cut(s)	269
RsaI	GTAC	1 cut(s)	89
RsaNI	GTAC	1 cut(s)	88
Sau3AI	GATC	1 cut(s)	76
ScrFI	CCNGG	2 cut(s)	243, 377
SetI	ASST	6 cut(s)	45, 162, 315, 354, 388, 404
SfaNI	GCATC	1 cut(s)	46
SfcI	CTRYAG	1 cut(s)	408
Sse9I	AATT	4 cut(s)	33, 148, 293, 325
SspI	AATATT	1 cut(s)	303
StyD4I	CCNGG	2 cut(s)	241, 375
StyI	CCWWGG	2 cut(s)	60, 190
TaaI	ACNGT	2 cut(s)	49, 180
TaqI	TCGA	1 cut(s)	146
TasI	AATT	4 cut(s)	33, 148, 293, 325
TatI	WGTACW	1 cut(s)	87
TfiI	GAWTC	1 cut(s)	163
TscAI	CASTG	1 cut(s)	52
TspGWI	ACGGA	1 cut(s)	170
TspRI	CASTG	1 cut(s)	52
Tth111I	GACNNNGTC	1 cut(s)	269
Van91I	CCANNNNNTGG	1 cut(s)	196
XapI	RAATTY	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.