Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002888

Physical Location & Seq

Genomic Coordinates Reverse (-)

15736976 .. 15739075

Gene Structure 2100 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ17711

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGAGCGTAATTAACATTTGTTTACACGTAATTGGAAAGTCAAACAACGTCTTCTCTCTGCCTCCCCAGTTTCACTTTTCTCGTCCTCCCCTGTTCACAGCAGAAAGTAACATCATGGCAACCCAAGCTACTGAGACCCCCAAAACAATTTATGACCTCACTGTCAAGGATGCCAAGGGAAATTATGTGGATCTTAGTGTGTACAAGGGGAAAGTTCTACTGATTGTCAATGTTGCTTCCAAATGTGGACTGACCAACTCGAATTACACGGAGCTGAATCAACTATATCAACAGTATAAAGACCAAGGCTTGGAGATACTGGCGTTTCCTTGCAATCAGTTTGGTGAAGAGGAACCAGGAAGTAATAAAGAGATTGAAGACTTTGTCTGCACTCGTTTCAAATCAGAATTTCCAATATTTGACAAGATTGATGTAAATGGTGATAATGCTGCTCCATTGTACAAGTTCTTGAAGTCAGGCAAACGGGGAGTCTTTGGAGATGACATTCAATGGAACTTTTCGAAGTTTCTAGTTGACAAGGATGGGATAGTTGCTCACCGCTATTACCCTACAACTGCCGCCCTTAGCCTTGAGTGTGACATAAAGAAGCTGTTGGGAGTCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0016209 GO:0016491 GO:0016684 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00480 ko00590 ko04918 map00480 map00590 map04918

Pfam Domains

Protein Families

GSHPx

Protein Analysis

208

Amino Acids

23.33

Weight (kDa)

5.94

Isoelectric Point (pI)

34.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GSHPx	PF00255	50 - 158	2e-44	Glutathione peroxidase
AhpC-TSA	PF00578	50 - 114	3.5e-07	AhpC/TSA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63460
fragaria_vesca	FvH4_5g02170 FvH4_5g02170 FvH4_5g02171
malus_domestica	MD06G1081400.v1.1 MD06G1081500.v1.1 MD06G1081600.v1.1 MD14G1103300.v1.1 MD14G1103400.v1.1
prunus_persica	Prupe.5G098500_v2.0.a1 Prupe.5G098600_v2.0.a1 Prupe.5G098600_v2.0.a1 Prupe.5G098700_v2.0.a1
pyrus_communis	pycom06g07840 pycom14g09920 pycom14g09930
rosa_chinensis	RchiOBHm_Chr6g0245721 RchiOBHm_Chr7g0197971 RchiOBHm_Chr7g0197981
rosa_laevigata	RLG00000003896 RLG00000003897
rosa_multiflora	Rmu_co8195742.1_g000001 Rmu_sc0001082.1_g000007 Rmu_sc0025270.1_g000001
rosa_roxburghii	Rroxscaffold_3G00258040 Rroxscaffold_3G00258050
rosa_rugosa	Rorug02G0237300 Rorug07G0045000
rosa_samantha	Rh7AG168400 Rh7BG171400 Rh7BG171500 Rh7CG177900 Rh7CG178000 Rh7CG467800 Rh7DG170500 Rh7DG170600
rosa_wichuraiana	Rw7G014710 Rw7G014720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	161
AccB7I	CCANNNNNTGG	1 cut(s)	310
AciI	CCGC	2 cut(s)	559, 579
AclWI	GGATC	1 cut(s)	198
AcsI	RAATTY	1 cut(s)	407
AfaI	GTAC	2 cut(s)	203, 461
AfiI	CCNNNNNNNGG	1 cut(s)	310
AflIII	ACRYGT	1 cut(s)	25
AgsI	TTSAA	4 cut(s)	377, 400, 472, 509
AjnI	CCWGG	1 cut(s)	355
AluBI	AGCT	3 cut(s)	128, 274, 610
AluI	AGCT	3 cut(s)	128, 274, 610
Alw26I	GTCTC	1 cut(s)	128
AlwI	GGATC	1 cut(s)	198
ApeKI	GCWGC	1 cut(s)	449
ApoI	RAATTY	1 cut(s)	407
ArsI	GACNNNNNNTTYG	2 cut(s)	474, 506
AsuHPI	GGTGA	3 cut(s)	356, 452, 548
AsuII	TTCGAA	1 cut(s)	521
BaeI	ACNNNNGTAYC	2 cut(s)	308, 341
BbsI	GAAGAC	2 cut(s)	43, 384
BbvI	GCAGC	1 cut(s)	436
BccI	CCATC	1 cut(s)	536
BciT130I	CCWGG	1 cut(s)	357
BcoDI	GTCTC	1 cut(s)	128
BfaI	CTAG	1 cut(s)	530
BisI	GCNGC	2 cut(s)	450, 579
BlsI	GCNGC	2 cut(s)	451, 580
Bme1390I	CCNGG	1 cut(s)	357
BmiI	GGNNCC	1 cut(s)	354
BmrFI	CCNGG	1 cut(s)	357
BmrI	ACTGGG	1 cut(s)	61
BmsI	GCATC	1 cut(s)	160
BmuI	ACTGGG	1 cut(s)	61
BpiI	GAAGAC	2 cut(s)	43, 384
Bpu10I	CCTNAGC	1 cut(s)	584
Bpu14I	TTCGAA	1 cut(s)	521
BpuEI	CTTGAG	1 cut(s)	611
BsaAI	YACGTR	1 cut(s)	28
BsaI	GGTCTC	1 cut(s)	128
BsaJI	CCNNGG	2 cut(s)	174, 304
Bsc4I	CCNNNNNNNGG	1 cut(s)	310
Bse1I	ACTGG	2 cut(s)	67, 324
BseBI	CCWGG	1 cut(s)	357
BseDI	CCNNGG	2 cut(s)	174, 304
BseGI	GGATG	2 cut(s)	175, 547
BseLI	CCNNNNNNNGG	1 cut(s)	310
BseMII	CTCAG	1 cut(s)	123
BseNI	ACTGG	2 cut(s)	67, 324
BseXI	GCAGC	1 cut(s)	436
BsgI	GTGCAG	1 cut(s)	373
BslI	CCNNNNNNNGG	1 cut(s)	310
BsmAI	GTCTC	1 cut(s)	128
Bso31I	GGTCTC	1 cut(s)	128
Bsp119I	TTCGAA	1 cut(s)	521
Bsp1407I	TGTACA	2 cut(s)	201, 459
Bsp143I	GATC	1 cut(s)	190
BspACI	CCGC	2 cut(s)	559, 579
BspCNI	CTCAG	1 cut(s)	124
BspHI	TCATGA	1 cut(s)	623
BspLI	GGNNCC	1 cut(s)	354
BspPI	GGATC	1 cut(s)	198
BspT104I	TTCGAA	1 cut(s)	521
BspTNI	GGTCTC	1 cut(s)	128
BsrGI	TGTACA	2 cut(s)	201, 459
BsrI	ACTGG	2 cut(s)	67, 324
BssECI	CCNNGG	2 cut(s)	174, 304
BssMI	GATC	1 cut(s)	190
BssT1I	CCWWGG	2 cut(s)	174, 304
Bst2UI	CCWGG	1 cut(s)	357
Bst4CI	ACNGT	2 cut(s)	163, 294
Bst6I	CTCTTC	1 cut(s)	342
BstAUI	TGTACA	2 cut(s)	201, 459
BstBAI	YACGTR	1 cut(s)	28
BstBI	TTCGAA	1 cut(s)	521
BstDEI	CTNAG	3 cut(s)	132, 194, 584
BstF5I	GGATG	2 cut(s)	175, 547
BstKTI	GATC	1 cut(s)	193
BstMAI	GTCTC	1 cut(s)	128
BstMBI	GATC	1 cut(s)	190
BstMWI	GCNNNNNNNGC	1 cut(s)	125
BstNI	CCWGG	1 cut(s)	357
BstSCI	CCNGG	1 cut(s)	355
BstV1I	GCAGC	1 cut(s)	436
BstV2I	GAAGAC	2 cut(s)	43, 384
BstX2I	RGATCY	1 cut(s)	190
BstYI	RGATCY	1 cut(s)	190
BtsCI	GGATG	2 cut(s)	175, 547
BtsIMutI	CAGTG	1 cut(s)	159
CciI	TCATGA	1 cut(s)	623
Csp6I	GTAC	2 cut(s)	202, 460
CviAII	CATG	2 cut(s)	115, 624
CviJI	RGCY	5 cut(s)	128, 274, 309, 588, 610
CviKI_1	RGCY	5 cut(s)	128, 274, 309, 588, 610
CviQI	GTAC	2 cut(s)	202, 460
DdeI	CTNAG	3 cut(s)	132, 194, 584
DpnI	GATC	1 cut(s)	192
DpnII	GATC	1 cut(s)	190
DrdI	GACNNNNNNGTC	1 cut(s)	161
DseDI	GACNNNNNNGTC	1 cut(s)	161
Eam1104I	CTCTTC	1 cut(s)	342
EarI	CTCTTC	1 cut(s)	342
Eco130I	CCWWGG	2 cut(s)	174, 304
Eco31I	GGTCTC	1 cut(s)	128
EcoRII	CCWGG	1 cut(s)	355
EcoT14I	CCWWGG	2 cut(s)	174, 304
ErhI	CCWWGG	2 cut(s)	174, 304
FaeI	CATG	2 cut(s)	118, 627
FaiI	YATR	7 cut(s)	116, 153, 186, 286, 297, 602, 625
FatI	CATG	2 cut(s)	114, 623
Fnu4HI	GCNGC	2 cut(s)	450, 579
FokI	GGATG	2 cut(s)	182, 554
Fsp4HI	GCNGC	2 cut(s)	450, 579
FspBI	CTAG	1 cut(s)	530
GluI	GCNGC	2 cut(s)	450, 579
Hin1II	CATG	2 cut(s)	118, 627
HincII	GTYRAC	1 cut(s)	535
HindII	GTYRAC	1 cut(s)	535
HinfI	GANTC	3 cut(s)	277, 489, 618
HphI	GGTGA	3 cut(s)	356, 452, 548
Hpy166II	GTNNAC	5 cut(s)	23, 96, 202, 248, 535
Hpy188I	TCNGA	1 cut(s)	406
Hpy188III	TCNNGA	2 cut(s)	469, 624
Hpy8I	GTNNAC	5 cut(s)	23, 96, 202, 248, 535
HpyCH4III	ACNGT	2 cut(s)	163, 294
HpyCH4IV	ACGT	2 cut(s)	27, 48
HpyCH4V	TGCA	2 cut(s)	333, 390
HpyF10VI	GCNNNNNNNGC	1 cut(s)	125
HpyF3I	CTNAG	3 cut(s)	132, 194, 584
HpySE526I	ACGT	2 cut(s)	27, 48
Hsp92II	CATG	2 cut(s)	118, 627
Kzo9I	GATC	1 cut(s)	190
LmnI	GCTCC	2 cut(s)	271, 457
LpnPI	CCDG	6 cut(s)	80, 104, 305, 342, 369, 462
Lsp1109I	GCAGC	1 cut(s)	436
LweI	GCATC	1 cut(s)	160
MaeI	CTAG	1 cut(s)	530
MaeII	ACGT	2 cut(s)	27, 48
MaeIII	GTNAC	2 cut(s)	107, 596
MalI	GATC	1 cut(s)	192
MboI	GATC	1 cut(s)	190
MboII	GAAGA	3 cut(s)	43, 359, 389
MflI	RGATCY	1 cut(s)	190
MluCI	AATT	6 cut(s)	9, 30, 147, 181, 262, 407
MlyI	GAGTC	2 cut(s)	498, 627
MnlI	CCTC	4 cut(s)	72, 96, 167, 343
MseI	TTAA	1 cut(s)	12
MspR9I	CCNGG	1 cut(s)	357
MvaI	CCWGG	1 cut(s)	357
MwoI	GCNNNNNNNGC	1 cut(s)	125
NdeII	GATC	1 cut(s)	190
NlaIII	CATG	2 cut(s)	118, 627
NlaIV	GGNNCC	1 cut(s)	354
NmuCI	GTSAC	1 cut(s)	596
NspV	TTCGAA	1 cut(s)	521
PagI	TCATGA	1 cut(s)	623
PfeI	GAWTC	1 cut(s)	277
PflFI	GACNNNGTC	1 cut(s)	383
PflMI	CCANNNNNTGG	1 cut(s)	310
PkrI	GCNGC	2 cut(s)	451, 580
PleI	GAGTC	2 cut(s)	497, 626
PpsI	GAGTC	2 cut(s)	497, 626
Ppu21I	YACGTR	1 cut(s)	28
Psp6I	CCWGG	1 cut(s)	355
PspGI	CCWGG	1 cut(s)	355
PspN4I	GGNNCC	1 cut(s)	354
PsuI	RGATCY	1 cut(s)	190
PsyI	GACNNNGTC	1 cut(s)	383
RsaI	GTAC	2 cut(s)	203, 461
RsaNI	GTAC	2 cut(s)	202, 460
SaqAI	TTAA	1 cut(s)	12
SatI	GCNGC	2 cut(s)	450, 579
Sau3AI	GATC	1 cut(s)	190
SchI	GAGTC	2 cut(s)	498, 627
ScrFI	CCNGG	1 cut(s)	357
SetI	ASST	6 cut(s)	30, 51, 130, 159, 276, 612
SfaNI	GCATC	1 cut(s)	160
SfuI	TTCGAA	1 cut(s)	521
SmlI	CTYRAG	1 cut(s)	590
SmoI	CTYRAG	1 cut(s)	590
Sse9I	AATT	6 cut(s)	9, 30, 147, 181, 262, 407
SsiI	CCGC	2 cut(s)	559, 579
SspI	AATATT	1 cut(s)	417
SspMI	CTAG	1 cut(s)	530
StyD4I	CCNGG	1 cut(s)	355
StyI	CCWWGG	2 cut(s)	174, 304
TaaI	ACNGT	2 cut(s)	163, 294
TaiI	ACGT	2 cut(s)	30, 51
TaqI	TCGA	2 cut(s)	260, 521
TasI	AATT	6 cut(s)	9, 30, 147, 181, 262, 407
TatI	WGTACW	2 cut(s)	201, 459
TauI	GCSGC	1 cut(s)	581
TfiI	GAWTC	1 cut(s)	277
Tru1I	TTAA	1 cut(s)	12
Tru9I	TTAA	1 cut(s)	12
TscAI	CASTG	1 cut(s)	166
TseFI	GTSAC	1 cut(s)	596
TseI	GCWGC	1 cut(s)	449
Tsp45I	GTSAC	1 cut(s)	596
TspGWI	ACGGA	1 cut(s)	284
TspRI	CASTG	1 cut(s)	166
Tth111I	GACNNNGTC	1 cut(s)	383
Van91I	CCANNNNNTGG	1 cut(s)	310
XapI	RAATTY	1 cut(s)	407
XspI	CTAG	1 cut(s)	530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.