Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002888

Physical Location & Seq

Genomic Coordinates Reverse (-)

1503337 .. 1503906

Gene Structure 570 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22023

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

ATGTTCTTTTATCTCAATTTTGAGAATGATGTGGATCATAACGTTTACAAGAGAAAAGTTCTGCTCATTGTCAAAGTTGCTTCCAAATGTGGACTAACAAACTCAAACTACACGGAGCTGAATCAACTATATGAAAAGTATAAAGATCAAGGTTTGAATTTTGAACTACTATTGTTCTTTGATGCCTATCATTTTGAGGACCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0016209 GO:0016491 GO:0016684 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00480 ko00590 ko04918 map00480 map00590 map04918

Pfam Domains

Protein Families

GSHPx

Protein Analysis

68

Amino Acids

8.27

Weight (kDa)

5.53

Isoelectric Point (pI)

12.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GSHPx	PF00255	9 - 53	1.6e-12	Glutathione peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0002888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63460
fragaria_vesca	FvH4_5g02170 FvH4_5g02170 FvH4_5g02171
malus_domestica	MD06G1081400.v1.1 MD06G1081500.v1.1 MD06G1081600.v1.1 MD14G1103300.v1.1 MD14G1103400.v1.1
prunus_persica	Prupe.5G098500_v2.0.a1 Prupe.5G098600_v2.0.a1 Prupe.5G098600_v2.0.a1 Prupe.5G098700_v2.0.a1
pyrus_communis	pycom06g07840 pycom14g09920 pycom14g09930
rosa_chinensis	RchiOBHm_Chr6g0245721 RchiOBHm_Chr7g0197971 RchiOBHm_Chr7g0197981
rosa_laevigata	RLG00000003896 RLG00000003897
rosa_multiflora	Rmu_co8195742.1_g000001 Rmu_sc0001082.1_g000007 Rmu_sc0025270.1_g000001
rosa_roxburghii	Rroxscaffold_3G00258040 Rroxscaffold_3G00258050
rosa_rugosa	Rorug02G0237300 Rorug07G0045000
rosa_samantha	Rh7AG168400 Rh7BG171400 Rh7BG171500 Rh7CG177900 Rh7CG178000 Rh7CG467800 Rh7DG170500 Rh7DG170600
rosa_wichuraiana	Rw7G014710 Rw7G014720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	42
AclWI	GGATC	1 cut(s)	42
AcsI	RAATTY	1 cut(s)	157
AgsI	TTSAA	2 cut(s)	157, 164
AluBI	AGCT	1 cut(s)	118
AluI	AGCT	1 cut(s)	118
AlwI	GGATC	1 cut(s)	42
ApoI	RAATTY	1 cut(s)	157
AspS9I	GGNCC	1 cut(s)	199
AvaII	GGWCC	1 cut(s)	199
Bme18I	GGWCC	1 cut(s)	199
BmgT120I	GGNCC	1 cut(s)	199
BmsI	GCATC	1 cut(s)	172
BsaBI	GATNNNNATC	2 cut(s)	33, 186
Bse8I	GATNNNNATC	2 cut(s)	33, 186
BseJI	GATNNNNATC	2 cut(s)	33, 186
Bsp143I	GATC	2 cut(s)	34, 145
BspPI	GGATC	1 cut(s)	42
BssMI	GATC	2 cut(s)	34, 145
Bst4CI	ACNGT	1 cut(s)	203
BstKTI	GATC	2 cut(s)	37, 148
BstMBI	GATC	2 cut(s)	34, 145
Cfr13I	GGNCC	1 cut(s)	199
CviJI	RGCY	1 cut(s)	118
CviKI_1	RGCY	1 cut(s)	118
DpnI	GATC	2 cut(s)	36, 147
DpnII	GATC	2 cut(s)	34, 145
Eco47I	GGWCC	1 cut(s)	199
FaiI	YATR	4 cut(s)	39, 130, 132, 141
FspEI	CC	7 cut(s)	17, 75, 97, 98, 135, 182, 199
HinfI	GANTC	1 cut(s)	121
Hpy166II	GTNNAC	2 cut(s)	46, 92
Hpy8I	GTNNAC	2 cut(s)	46, 92
HpyCH4III	ACNGT	1 cut(s)	203
HpyCH4IV	ACGT	1 cut(s)	42
HpySE526I	ACGT	1 cut(s)	42
Kzo9I	GATC	2 cut(s)	34, 145
LmnI	GCTCC	1 cut(s)	115
LweI	GCATC	1 cut(s)	172
MaeII	ACGT	1 cut(s)	42
MalI	GATC	2 cut(s)	36, 147
MboI	GATC	2 cut(s)	34, 145
MluCI	AATT	2 cut(s)	16, 157
MnlI	CCTC	1 cut(s)	190
NdeII	GATC	2 cut(s)	34, 145
PfeI	GAWTC	1 cut(s)	121
Psp1406I	AACGTT	1 cut(s)	42
PspPI	GGNCC	1 cut(s)	199
Sau3AI	GATC	2 cut(s)	34, 145
Sau96I	GGNCC	1 cut(s)	199
SetI	ASST	3 cut(s)	45, 120, 154
SfaNI	GCATC	1 cut(s)	172
SgeI	CNNG	3 cut(s)	61, 124, 161
SinI	GGWCC	1 cut(s)	199
Sse9I	AATT	2 cut(s)	16, 157
TaaI	ACNGT	1 cut(s)	203
TaiI	ACGT	1 cut(s)	45
TasI	AATT	2 cut(s)	16, 157
TfiI	GAWTC	1 cut(s)	121
TspDTI	ATGAA	1 cut(s)	147
TspGWI	ACGGA	1 cut(s)	128
VpaK11BI	GGWCC	1 cut(s)	199
XapI	RAATTY	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.