Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0002888

Physical Location & Seq

Genomic Coordinates Forward (+)

19937695 .. 19940356

Gene Structure 2662 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1081400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGACAAGCCAGGCAACTGAGAACCCAAAAACAATTTACGACTTCACTGTCAAGGATGCAAAGGGCAATGATGTGGATCTTAGCTTGTACAAGGGAAAAGTTCTACTCGTTATCAATGTTGCTTCCAAATGTGGACTGACCAACTCAAACTACACAGAGCTGAATCAACTATACCAACAGTATAAAGAACAAGGCTTTGAGATACTGGCGTTTCCATGCAATCAGTTTGGTGATGAGGAACCGGGAAGTAATAAAGAGATTGAAGAGTTTGTCTGCACTCGTTTCAAATCTGAATTTCCAATTTTTGACAAGATTGAAGTAAACGGTGATAATGCTGGTCCCTTGTATAAGTTCTTGAAGTTAGGCAAATGGGGATTCTTTGGAGATGATATCCAATGGAATTTTACCAAGTTTCTAGTTGACAAGGAGGGGAAAGTTTCTGATCGCTATTACCCGACCACTCCCCCCCTTAGTATTGAGCGGGATTTAAAGAAGCTATTGGGAGGCCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0016209 GO:0016491 GO:0016684 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00480 ko00590 ko04918 map00480 map00590 map04918

Pfam Domains

Protein Families

GSHPx

Protein Analysis

171

Amino Acids

19.38

Weight (kDa)

5.01

Isoelectric Point (pI)

26.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GSHPx	PF00255	12 - 120	1.1e-43	Glutathione peroxidase
AhpC-TSA	PF00578	12 - 74	1.6e-08	AhpC/TSA family
Redoxin	PF08534	12 - 71	5.3e-07	Redoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63460
fragaria_vesca	FvH4_5g02170 FvH4_5g02170 FvH4_5g02171
malus_domestica	MD06G1081400.v1.1 MD06G1081500.v1.1 MD06G1081600.v1.1 MD14G1103300.v1.1 MD14G1103400.v1.1
prunus_persica	Prupe.5G098500_v2.0.a1 Prupe.5G098600_v2.0.a1 Prupe.5G098600_v2.0.a1 Prupe.5G098700_v2.0.a1
pyrus_communis	pycom06g07840 pycom14g09920 pycom14g09930
rosa_chinensis	RchiOBHm_Chr6g0245721 RchiOBHm_Chr7g0197971 RchiOBHm_Chr7g0197981
rosa_laevigata	RLG00000003896 RLG00000003897
rosa_multiflora	Rmu_co8195742.1_g000001 Rmu_sc0001082.1_g000007 Rmu_sc0025270.1_g000001
rosa_roxburghii	Rroxscaffold_3G00258040 Rroxscaffold_3G00258050
rosa_rugosa	Rorug02G0237300 Rorug07G0045000
rosa_samantha	Rh7AG168400 Rh7BG171400 Rh7BG171500 Rh7CG177900 Rh7CG178000 Rh7CG467800 Rh7DG170500 Rh7DG170600
rosa_wichuraiana	Rw7G014710 Rw7G014720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	47
AccBSI	CCGCTC	1 cut(s)	481
AciI	CCGC	1 cut(s)	481
AclWI	GGATC	1 cut(s)	84
AcsI	RAATTY	2 cut(s)	293, 400
AfaI	GTAC	1 cut(s)	89
AgsI	TTSAA	4 cut(s)	263, 286, 317, 358
AjnI	CCWGG	1 cut(s)	9
AluBI	AGCT	3 cut(s)	84, 160, 496
AluI	AGCT	3 cut(s)	84, 160, 496
AlwI	GGATC	1 cut(s)	84
AoxI	GGCC	1 cut(s)	505
ApoI	RAATTY	2 cut(s)	293, 400
AspS9I	GGNCC	2 cut(s)	338, 506
AsuC2I	CCSGG	1 cut(s)	243
AsuHPI	GGTGA	2 cut(s)	242, 338
AvaII	GGWCC	1 cut(s)	338
BaeI	ACNNNNGTAYC	2 cut(s)	194, 227
BciT130I	CCWGG	1 cut(s)	11
BcnI	CCSGG	1 cut(s)	243
BfaI	CTAG	1 cut(s)	416
Bme1390I	CCNGG	2 cut(s)	11, 243
Bme18I	GGWCC	1 cut(s)	338
BmgT120I	GGNCC	2 cut(s)	338, 506
BmiI	GGNNCC	2 cut(s)	240, 340
BmrFI	CCNGG	2 cut(s)	11, 243
BmsI	GCATC	1 cut(s)	46
BpuMI	CCSGG	1 cut(s)	243
BsaBI	GATNNNNATC	1 cut(s)	75
Bse1I	ACTGG	1 cut(s)	210
Bse3DI	GCAATG	1 cut(s)	73
Bse8I	GATNNNNATC	1 cut(s)	75
BseBI	CCWGG	1 cut(s)	11
BseGI	GGATG	1 cut(s)	61
BseJI	GATNNNNATC	1 cut(s)	75
BseMI	GCAATG	1 cut(s)	73
BseMII	CTCAG	1 cut(s)	9
BseNI	ACTGG	1 cut(s)	210
BsgI	GTGCAG	1 cut(s)	259
BshFI	GGCC	1 cut(s)	507
BsiSI	CCGG	1 cut(s)	242
BslFI	GGGAC	1 cut(s)	324
BsmFI	GGGAC	1 cut(s)	324
BsnI	GGCC	1 cut(s)	507
Bsp1407I	TGTACA	1 cut(s)	87
Bsp143I	GATC	2 cut(s)	76, 442
BspACI	CCGC	1 cut(s)	481
BspANI	GGCC	1 cut(s)	507
BspCNI	CTCAG	1 cut(s)	10
BspLI	GGNNCC	2 cut(s)	240, 340
BspPI	GGATC	1 cut(s)	84
BsrBI	CCGCTC	1 cut(s)	481
BsrDI	GCAATG	1 cut(s)	73
BsrGI	TGTACA	1 cut(s)	87
BsrI	ACTGG	1 cut(s)	210
BssMI	GATC	2 cut(s)	76, 442
Bst2UI	CCWGG	1 cut(s)	11
Bst4CI	ACNGT	3 cut(s)	49, 180, 326
Bst6I	CTCTTC	1 cut(s)	258
BstAUI	TGTACA	1 cut(s)	87
BstDEI	CTNAG	3 cut(s)	18, 80, 470
BstF5I	GGATG	1 cut(s)	61
BstKTI	GATC	2 cut(s)	79, 445
BstMBI	GATC	2 cut(s)	76, 442
BstNI	CCWGG	1 cut(s)	11
BstSCI	CCNGG	2 cut(s)	9, 241
BstX2I	RGATCY	1 cut(s)	76
BstYI	RGATCY	1 cut(s)	76
BsuRI	GGCC	1 cut(s)	507
BtsCI	GGATG	1 cut(s)	61
BtsIMutI	CAGTG	1 cut(s)	45
Cfr13I	GGNCC	2 cut(s)	338, 506
Csp6I	GTAC	1 cut(s)	88
CviAII	CATG	1 cut(s)	216
CviJI	RGCY	6 cut(s)	9, 84, 160, 195, 496, 507
CviKI_1	RGCY	6 cut(s)	9, 84, 160, 195, 496, 507
CviQI	GTAC	1 cut(s)	88
DdeI	CTNAG	3 cut(s)	18, 80, 470
DpnI	GATC	2 cut(s)	78, 444
DpnII	GATC	2 cut(s)	76, 442
DraI	TTTAAA	1 cut(s)	489
DrdI	GACNNNNNNGTC	1 cut(s)	47
DseDI	GACNNNNNNGTC	1 cut(s)	47
Eam1104I	CTCTTC	1 cut(s)	258
EarI	CTCTTC	1 cut(s)	258
Eco32I	GATATC	1 cut(s)	391
Eco47I	GGWCC	1 cut(s)	338
EcoRII	CCWGG	1 cut(s)	9
EcoRV	GATATC	1 cut(s)	391
FaeI	CATG	1 cut(s)	219
FaiI	YATR	4 cut(s)	172, 183, 217, 348
FaqI	GGGAC	1 cut(s)	324
FatI	CATG	1 cut(s)	215
FauI	CCCGC	1 cut(s)	474
FokI	GGATG	1 cut(s)	68
FspBI	CTAG	1 cut(s)	416
HaeIII	GGCC	1 cut(s)	507
HapII	CCGG	1 cut(s)	242
Hin1II	CATG	1 cut(s)	219
HincII	GTYRAC	1 cut(s)	421
HindII	GTYRAC	1 cut(s)	421
HinfI	GANTC	2 cut(s)	163, 375
HpaII	CCGG	1 cut(s)	242
HphI	GGTGA	2 cut(s)	242, 338
Hpy166II	GTNNAC	3 cut(s)	134, 322, 421
Hpy188I	TCNGA	2 cut(s)	292, 442
Hpy188III	TCNNGA	1 cut(s)	355
Hpy8I	GTNNAC	3 cut(s)	134, 322, 421
HpyCH4III	ACNGT	3 cut(s)	49, 180, 326
HpyCH4V	TGCA	3 cut(s)	59, 219, 276
HpyF3I	CTNAG	3 cut(s)	18, 80, 470
Hsp92II	CATG	1 cut(s)	219
Kzo9I	GATC	2 cut(s)	76, 442
LpnPI	CCDG	4 cut(s)	23, 191, 255, 321
LweI	GCATC	1 cut(s)	46
MaeI	CTAG	1 cut(s)	416
MalI	GATC	2 cut(s)	78, 444
MbiI	CCGCTC	1 cut(s)	481
MboI	GATC	2 cut(s)	76, 442
MboII	GAAGA	1 cut(s)	275
MflI	RGATCY	1 cut(s)	76
MluCI	AATT	4 cut(s)	33, 293, 300, 400
MnlI	CCTC	3 cut(s)	229, 421, 497
MseI	TTAA	1 cut(s)	488
MspI	CCGG	1 cut(s)	242
MspR9I	CCNGG	2 cut(s)	11, 243
MvaI	CCWGG	1 cut(s)	11
NciI	CCSGG	1 cut(s)	243
NdeII	GATC	2 cut(s)	76, 442
NlaIII	CATG	1 cut(s)	219
NlaIV	GGNNCC	2 cut(s)	240, 340
PfeI	GAWTC	2 cut(s)	163, 375
Psp6I	CCWGG	1 cut(s)	9
PspGI	CCWGG	1 cut(s)	9
PspN4I	GGNNCC	2 cut(s)	240, 340
PspPI	GGNCC	2 cut(s)	338, 506
PsuI	RGATCY	1 cut(s)	76
RsaI	GTAC	1 cut(s)	89
RsaNI	GTAC	1 cut(s)	88
SaqAI	TTAA	1 cut(s)	488
Sau3AI	GATC	2 cut(s)	76, 442
Sau96I	GGNCC	2 cut(s)	338, 506
ScrFI	CCNGG	2 cut(s)	11, 243
SetI	ASST	3 cut(s)	86, 162, 498
SfaNI	GCATC	1 cut(s)	46
SinI	GGWCC	1 cut(s)	338
Sse9I	AATT	4 cut(s)	33, 293, 300, 400
SsiI	CCGC	1 cut(s)	481
SspMI	CTAG	1 cut(s)	416
StyD4I	CCNGG	2 cut(s)	9, 241
TaaI	ACNGT	3 cut(s)	49, 180, 326
TasI	AATT	4 cut(s)	33, 293, 300, 400
TatI	WGTACW	1 cut(s)	87
TfiI	GAWTC	2 cut(s)	163, 375
Tru1I	TTAA	1 cut(s)	488
Tru9I	TTAA	1 cut(s)	488
TscAI	CASTG	1 cut(s)	52
TspRI	CASTG	1 cut(s)	52
VpaK11BI	GGWCC	1 cut(s)	338
XapI	RAATTY	2 cut(s)	293, 400
XspI	CTAG	1 cut(s)	416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.