Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002343

Physical Location & Seq

Genomic Coordinates Forward (+)

25752624 .. 25756113

Gene Structure 3490 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G68580.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1287 bp

ATGACTGAAAAAGATGCTGGAGGGTTCAATATGAGCACTTTTATGAATAGGAAATTTCAGGAGCCTATTCAGCAGATCAAAACGTTCTCTTGGATGGGTTTTTCTTGGACTTGCAGGAAACGGCGTAAGCATTATCAGTCTTATCTCCGGAATGGTGTCAGAATATCTGTGAATGATTTTGTGTATGTTTTAGCGGAGCAACATAAGAGACTTGTTGCATATATAGAAGACCTTTATGAGGATTCTAAAGGCAAGAAGATGGTTGTGGTACGATGGTTTCACAAAACTGAGGAGGTTGGTTCTGTTTTATCTGATGATGATAATGACAGAGAGATATTTTTTTCTCTTAATCGGCAAGATATCAGTATTGAGTGCATAGATTACTTGGCTACTGTCCTTAGTCCTCAGCATTATGAGAAATTTCTTAAGGTGCCGATGCATGTTCAGACAGTAGCTTTCTTCTGCCAGAAATTATATGGAGATGATGGTTTAAAGCCGTATGACATTACACAACTAGAAGGTTACTGGAGACAAGAAATGCTTAGATACTTGAATGTATCTATTTTAAAATCATTTGAAGGTGCTCAAGCCCCTGGTACTGACCCAGGATTAAAAGCTCCATTGGTTGGTTGTGTTGGGATTAGATCAAGGAAAAGACGCCGTCCTAGTCCTGTTGGTACTTTGAATGTATCATACGCAGGTGACATGAAAGGTGACTGCAAATCTAGTCCAGATTCTGTTTTGGCTGTTACAGATGCTTCTATATTCAAGGGTGACGAAGATGGTTCTTCCCATCACATTAAAAAGGGTTCACTTATTGAAGTTCTTTCTGAAGATAGTGGCATCAGAGGTTGTTGGTTTAAGGCTCTGGTATTAAAGAAACACAAAGATAAGGTTAAGGTCCAGTACCAAGATATTCAGGATGCAGACGATGAATCTAAAAAGCTAGAGGAATGGATTTTGACATCTCGGGTTGCTGCTGGTGATCATCTGGGGGATCTTAGAATCAAAGGACGGAAAGTAGTAAGACCAATGCTGAAGCCCAGCAAAGAAAATGATGTATGTGTCATCGGGGTTGGTATGCCTGTGGATGTGTGGTGGTGTGATGGATGGTGGGAAGGGATCGTGGTGCAGGAAGTTTCTGAAGAGAAATTTGAAGTTTACTTGCCAGGCGAAAAGAAAATGTCTGCTTTCCATCGTAATGACCTCAGACAATCTCGGGAATGGTTGGATGATGAGTGGCTAAACATAAGATCAAGATCTGATATTGATGTCACCAAAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Agenet BAH

Protein Analysis

428

Amino Acids

49.35

Weight (kDa)

7.13

Isoelectric Point (pI)

56.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BAH	PF01426	105 - 212	1.7e-12	BAH domain
Agenet	PF05641	320 - 375	3.8e-16	Agenet domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002343)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68580 AT1G68580 AT1G68580 AT1G68580 AT1G68580
fragaria_vesca	FvH4_4g27610 FvH4_4g27610 FvH4_4g27610 FvH4_4g27610 FvH4_4g27610 FvH4_4g27610 FvH4_4g27610 FvH4_4g27610
malus_domestica	MD13G1043500.v1.1 MD16G1044300.v1.1
prunus_persica	Prupe.1G309000_v2.0.a1 Prupe.1G309000_v2.0.a1 Prupe.1G309000_v2.0.a1
pyrus_communis	pycom13g03830 pycom16g03850
rosa_chinensis	RchiOBHm_Chr3g0482621 RchiOBHm_Chr3g0482631 RchiOBHm_Chr3g0482641 RchiOBHm_Chr4g0435461
rosa_laevigata	RLG00000006591
rosa_multiflora	Rmu_sc0006069.1_g000002 Rmu_sc0015893.1_g000006 Rmu_sc0015893.1_g000007
rosa_roxburghii	Rroxscaffold_3G00234330 Rroxscaffold_5G00376690
rosa_rugosa	Rorug04G0285200
rosa_samantha	Rh3AG248900 Rh3CG281900 Rh3CG282000 Rh3CG282100 Rh3DG278100 Rh4AG340900 Rh4BG349200 Rh4CG363700 Rh4DG343400
rosa_wichuraiana	Rw3G022470 Rw4G029730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	689
Acc36I	ACCTGC	1 cut(s)	689
AccB1I	GGYRCC	1 cut(s)	430
AccB7I	CCANNNNNTGG	1 cut(s)	626
AccIII	TCCGGA	1 cut(s)	147
AciI	CCGC	1 cut(s)	194
AclI	AACGTT	1 cut(s)	83
AclWI	GGATC	2 cut(s)	1005, 1130
AcsI	RAATTY	3 cut(s)	53, 419, 1151
AcuI	CTGAAG	3 cut(s)	852, 1058, 1164
AcyI	GRCGYC	1 cut(s)	658
AfaI	GTAC	4 cut(s)	270, 598, 679, 908
AfiI	CCNNNNNNNGG	2 cut(s)	238, 626
AflII	CTTAAG	1 cut(s)	425
AgsI	TTSAA	7 cut(s)	28, 553, 578, 685, 769, 821, 1157
AjnI	CCWGG	3 cut(s)	592, 604, 1168
AluBI	AGCT	3 cut(s)	455, 617, 946
AluI	AGCT	3 cut(s)	455, 617, 946
Alw21I	GWGCWC	2 cut(s)	38, 586
Alw26I	GTCTC	2 cut(s)	202, 523
AlwI	GGATC	2 cut(s)	1005, 1130
AlwNI	CAGNNNCTG	1 cut(s)	737
Ama87I	CYCGRG	2 cut(s)	969, 1218
Aor13HI	TCCGGA	1 cut(s)	147
ApeKI	GCWGC	1 cut(s)	977
ApoI	RAATTY	3 cut(s)	53, 419, 1151
AspS9I	GGNCC	1 cut(s)	901
AsuHPI	GGTGA	5 cut(s)	713, 725, 785, 995, 1267
AvaI	CYCGRG	2 cut(s)	969, 1218
AvaII	GGWCC	1 cut(s)	901
BaeI	ACNNNNGTAYC	2 cut(s)	260, 293
BanI	GGYRCC	1 cut(s)	430
BbsI	GAAGAC	1 cut(s)	234
Bbv12I	GWGCWC	2 cut(s)	38, 586
BbvCI	CCTCAGC	1 cut(s)	405
BbvI	GCAGC	1 cut(s)	964
BccI	CCATC	9 cut(s)	88, 253, 267, 479, 776, 801, 1100, 1104, 1203
BceAI	ACGGC	3 cut(s)	137, 481, 645
BciT130I	CCWGG	3 cut(s)	594, 606, 1170
BclI	TGATCA	1 cut(s)	985
BcoDI	GTCTC	2 cut(s)	202, 523
BfaI	CTAG	4 cut(s)	515, 666, 726, 947
BfrI	CTTAAG	1 cut(s)	425
BfuAI	ACCTGC	1 cut(s)	689
BglII	AGATCT	1 cut(s)	1259
BisI	GCNGC	1 cut(s)	978
BlsI	GCNGC	1 cut(s)	979
Bme1390I	CCNGG	3 cut(s)	594, 606, 1170
Bme18I	GGWCC	1 cut(s)	901
BmeT110I	CYCGRG	2 cut(s)	969, 1218
BmgT120I	GGNCC	1 cut(s)	901
BmiI	GGNNCC	2 cut(s)	63, 432
BmrFI	CCNGG	3 cut(s)	594, 606, 1170
BmsI	GCATC	5 cut(s)	4, 426, 745, 852, 913
BpiI	GAAGAC	1 cut(s)	234
BpmI	CTGGAG	2 cut(s)	39, 547
Bpu10I	CCTNAGC	1 cut(s)	405
BpuEI	CTTGAG	1 cut(s)	570
BsaBI	GATNNNNATC	1 cut(s)	1258
BsaHI	GRCGYC	1 cut(s)	658
BsaJI	CCNNGG	2 cut(s)	592, 604
BsaWI	WCCGGW	1 cut(s)	147
Bsc4I	CCNNNNNNNGG	2 cut(s)	238, 626
Bse1I	ACTGG	2 cut(s)	530, 904
Bse8I	GATNNNNATC	1 cut(s)	1258
BseAI	TCCGGA	1 cut(s)	147
BseBI	CCWGG	3 cut(s)	594, 606, 1170
BseDI	CCNNGG	2 cut(s)	592, 604
BseGI	GGATG	5 cut(s)	99, 928, 1096, 1115, 1237
BseJI	GATNNNNATC	1 cut(s)	1258
BseLI	CCNNNNNNNGG	2 cut(s)	238, 626
BseMII	CTCAG	3 cut(s)	279, 419, 1222
BseNI	ACTGG	2 cut(s)	530, 904
BseRI	GAGGAG	1 cut(s)	305
BseXI	GCAGC	1 cut(s)	964
BseYI	CCCAGC	1 cut(s)	1043
BsgI	GTGCAG	1 cut(s)	1151
BshNI	GGYRCC	1 cut(s)	430
BsiHKAI	GWGCWC	2 cut(s)	38, 586
BsiHKCI	CYCGRG	2 cut(s)	969, 1218
BsiSI	CCGG	1 cut(s)	148
BslI	CCNNNNNNNGG	2 cut(s)	238, 626
BsmAI	GTCTC	2 cut(s)	202, 523
BsoBI	CYCGRG	2 cut(s)	969, 1218
Bsp1286I	GDGCHC	2 cut(s)	38, 586
Bsp13I	TCCGGA	1 cut(s)	147
Bsp143I	GATC	7 cut(s)	75, 644, 985, 997, 1122, 1253, 1259
BspACI	CCGC	1 cut(s)	194
BspCNI	CTCAG	3 cut(s)	280, 418, 1221
BspEI	TCCGGA	1 cut(s)	147
BspLI	GGNNCC	2 cut(s)	63, 432
BspMI	ACCTGC	1 cut(s)	689
BspPI	GGATC	2 cut(s)	1005, 1130
BspT107I	GGYRCC	1 cut(s)	430
BspTI	CTTAAG	1 cut(s)	425
BsrI	ACTGG	2 cut(s)	530, 904
BssECI	CCNNGG	2 cut(s)	592, 604
BssMI	GATC	7 cut(s)	75, 644, 985, 997, 1122, 1253, 1259
BssNI	GRCGYC	1 cut(s)	658
Bst2UI	CCWGG	3 cut(s)	594, 606, 1170
Bst4CI	ACNGT	2 cut(s)	394, 451
Bst6I	CTCTTC	1 cut(s)	1140
BstACI	GRCGYC	1 cut(s)	658
BstAFI	CTTAAG	1 cut(s)	425
BstDEI	CTNAG	6 cut(s)	288, 398, 405, 542, 1001, 1208
BstENI	CCTNNNNNAGG	1 cut(s)	236
BstF5I	GGATG	5 cut(s)	99, 928, 1096, 1115, 1237
BstKTI	GATC	7 cut(s)	78, 647, 988, 1000, 1125, 1256, 1262
BstMAI	GTCTC	2 cut(s)	202, 523
BstMBI	GATC	7 cut(s)	75, 644, 985, 997, 1122, 1253, 1259
BstMWI	GCNNNNNNNGC	1 cut(s)	70
BstNI	CCWGG	3 cut(s)	594, 606, 1170
BstNSI	RCATGY	1 cut(s)	443
BstSCI	CCNGG	3 cut(s)	592, 604, 1168
BstV1I	GCAGC	1 cut(s)	964
BstV2I	GAAGAC	1 cut(s)	234
BstX2I	RGATCY	2 cut(s)	997, 1259
BstYI	RGATCY	2 cut(s)	997, 1259
BtsCI	GGATG	5 cut(s)	99, 928, 1096, 1115, 1237
BveI	ACCTGC	1 cut(s)	689
CaiI	CAGNNNCTG	1 cut(s)	737
Cfr13I	GGNCC	1 cut(s)	901
CseI	GACGC	1 cut(s)	666
Csp6I	GTAC	4 cut(s)	269, 597, 678, 907
CviAII	CATG	2 cut(s)	440, 706
CviQI	GTAC	4 cut(s)	269, 597, 678, 907
DdeI	CTNAG	6 cut(s)	288, 398, 405, 542, 1001, 1208
DpnI	GATC	7 cut(s)	77, 646, 987, 999, 1124, 1255, 1261
DpnII	GATC	7 cut(s)	75, 644, 985, 997, 1122, 1253, 1259
DraI	TTTAAA	2 cut(s)	492, 567
Eam1104I	CTCTTC	1 cut(s)	1140
EarI	CTCTTC	1 cut(s)	1140
Eco32I	GATATC	1 cut(s)	361
Eco47I	GGWCC	1 cut(s)	901
Eco57I	CTGAAG	3 cut(s)	852, 1058, 1164
Eco88I	CYCGRG	2 cut(s)	969, 1218
EcoNI	CCTNNNNNAGG	1 cut(s)	236
EcoRII	CCWGG	3 cut(s)	592, 604, 1168
EcoRV	GATATC	1 cut(s)	361
EcoT22I	ATGCAT	1 cut(s)	441
FaeI	CATG	2 cut(s)	443, 709
FalI	AAGNNNNNCTT	2 cut(s)	525, 557
FatI	CATG	2 cut(s)	439, 705
FbaI	TGATCA	1 cut(s)	985
Fnu4HI	GCNGC	1 cut(s)	978
FokI	GGATG	5 cut(s)	106, 935, 1103, 1122, 1244
Fsp4HI	GCNGC	1 cut(s)	978
FspBI	CTAG	4 cut(s)	515, 666, 726, 947
GluI	GCNGC	1 cut(s)	978
GsaI	CCCAGC	1 cut(s)	1047
GsuI	CTGGAG	2 cut(s)	39, 547
HapII	CCGG	1 cut(s)	148
HgaI	GACGC	1 cut(s)	666
Hin1I	GRCGYC	1 cut(s)	658
Hin1II	CATG	2 cut(s)	443, 709
HinfI	GANTC	4 cut(s)	242, 734, 935, 1005
HpaII	CCGG	1 cut(s)	148
HphI	GGTGA	5 cut(s)	713, 725, 785, 995, 1267
Hpy166II	GTNNAC	2 cut(s)	812, 1162
Hpy188I	TCNGA	8 cut(s)	161, 313, 447, 832, 848, 1144, 1211, 1264
Hpy188III	TCNNGA	6 cut(s)	59, 148, 731, 920, 1220, 1257
Hpy8I	GTNNAC	2 cut(s)	812, 1162
HpyAV	CCTTC	3 cut(s)	512, 572, 1112
HpyCH4III	ACNGT	2 cut(s)	394, 451
HpyCH4IV	ACGT	1 cut(s)	83
HpyCH4V	TGCA	7 cut(s)	114, 218, 375, 439, 720, 926, 1132
HpyF10VI	GCNNNNNNNGC	1 cut(s)	70
HpyF3I	CTNAG	6 cut(s)	288, 398, 405, 542, 1001, 1208
HpySE526I	ACGT	1 cut(s)	83
Hsp92I	GRCGYC	1 cut(s)	658
Hsp92II	CATG	2 cut(s)	443, 709
Kpn2I	TCCGGA	1 cut(s)	147
Ksp22I	TGATCA	1 cut(s)	985
Kzo9I	GATC	7 cut(s)	75, 644, 985, 997, 1122, 1253, 1259
LmnI	GCTCC	3 cut(s)	61, 196, 622
Lsp1109I	GCAGC	1 cut(s)	964
LweI	GCATC	5 cut(s)	4, 426, 745, 852, 913
MaeI	CTAG	4 cut(s)	515, 666, 726, 947
MaeII	ACGT	1 cut(s)	83
MaeIII	GTNAC	6 cut(s)	521, 701, 713, 748, 773, 1273
MalI	GATC	7 cut(s)	77, 646, 987, 999, 1124, 1255, 1261
MboI	GATC	7 cut(s)	75, 644, 985, 997, 1122, 1253, 1259
MboII	GAAGA	7 cut(s)	239, 268, 451, 780, 791, 845, 1157
MflI	RGATCY	2 cut(s)	997, 1259
MhlI	GDGCHC	2 cut(s)	38, 586
MluCI	AATT	4 cut(s)	53, 419, 470, 1151
MmeI	TCCRAC	1 cut(s)	1209
MnlI	CCTC	8 cut(s)	14, 232, 283, 286, 414, 842, 943, 1217
Mph1103I	ATGCAT	1 cut(s)	441
MroI	TCCGGA	1 cut(s)	147
MseI	TTAA	9 cut(s)	348, 426, 491, 566, 611, 801, 861, 875, 897
MslI	CAYNNNNRTG	2 cut(s)	41, 1200
MspCI	CTTAAG	1 cut(s)	425
MspI	CCGG	1 cut(s)	148
MspR9I	CCNGG	3 cut(s)	594, 606, 1170
MvaI	CCWGG	3 cut(s)	594, 606, 1170
MwoI	GCNNNNNNNGC	1 cut(s)	70
NdeII	GATC	7 cut(s)	75, 644, 985, 997, 1122, 1253, 1259
NlaIII	CATG	2 cut(s)	443, 709
NlaIV	GGNNCC	2 cut(s)	63, 432
NmuCI	GTSAC	4 cut(s)	701, 713, 773, 1273
NsiI	ATGCAT	1 cut(s)	441
NspI	RCATGY	1 cut(s)	443
PaqCI	CACCTGC	1 cut(s)	689
PfeI	GAWTC	4 cut(s)	242, 734, 935, 1005
PflFI	GACNNNGTC	1 cut(s)	660
PflMI	CCANNNNNTGG	1 cut(s)	626
PkrI	GCNGC	1 cut(s)	979
Psp1406I	AACGTT	1 cut(s)	83
Psp6I	CCWGG	3 cut(s)	592, 604, 1168
PspFI	CCCAGC	1 cut(s)	1043
PspGI	CCWGG	3 cut(s)	592, 604, 1168
PspN4I	GGNNCC	2 cut(s)	63, 432
PspPI	GGNCC	1 cut(s)	901
PstNI	CAGNNNCTG	1 cut(s)	737
PsuI	RGATCY	2 cut(s)	997, 1259
PsyI	GACNNNGTC	1 cut(s)	660
RsaI	GTAC	4 cut(s)	270, 598, 679, 908
RsaNI	GTAC	4 cut(s)	269, 597, 678, 907
RseI	CAYNNNNRTG	2 cut(s)	41, 1200
SaqAI	TTAA	9 cut(s)	348, 426, 491, 566, 611, 801, 861, 875, 897
SatI	GCNGC	1 cut(s)	978
Sau3AI	GATC	7 cut(s)	75, 644, 985, 997, 1122, 1253, 1259
Sau96I	GGNCC	1 cut(s)	901
ScrFI	CCNGG	3 cut(s)	594, 606, 1170
SduI	GDGCHC	2 cut(s)	38, 586
SfaNI	GCATC	5 cut(s)	4, 426, 745, 852, 913
SinI	GGWCC	1 cut(s)	901
SmiMI	CAYNNNNRTG	2 cut(s)	41, 1200
SmlI	CTYRAG	2 cut(s)	425, 585
SmoI	CTYRAG	2 cut(s)	425, 585
Sse9I	AATT	4 cut(s)	53, 419, 470, 1151
SsiI	CCGC	1 cut(s)	194
SspMI	CTAG	4 cut(s)	515, 666, 726, 947
StyD4I	CCNGG	3 cut(s)	592, 604, 1168
TaaI	ACNGT	2 cut(s)	394, 451
TaiI	ACGT	1 cut(s)	86
TasI	AATT	4 cut(s)	53, 419, 470, 1151
TfiI	GAWTC	4 cut(s)	242, 734, 935, 1005
Tru1I	TTAA	9 cut(s)	348, 426, 491, 566, 611, 801, 861, 875, 897
Tru9I	TTAA	9 cut(s)	348, 426, 491, 566, 611, 801, 861, 875, 897
TseFI	GTSAC	4 cut(s)	701, 713, 773, 1273
TseI	GCWGC	1 cut(s)	977
Tsp45I	GTSAC	4 cut(s)	701, 713, 773, 1273
TspDTI	ATGAA	3 cut(s)	59, 722, 948
TspGWI	ACGGA	1 cut(s)	1030
Tth111I	GACNNNGTC	1 cut(s)	660
Van91I	CCANNNNNTGG	1 cut(s)	626
Vha464I	CTTAAG	1 cut(s)	425
VpaK11BI	GGWCC	1 cut(s)	901
XagI	CCTNNNNNAGG	1 cut(s)	236
XapI	RAATTY	3 cut(s)	53, 419, 1151
XceI	RCATGY	1 cut(s)	443
XcmI	CCANNNNNNNNNTGG	1 cut(s)	473
XspI	CTAG	4 cut(s)	515, 666, 726, 947
Zsp2I	ATGCAT	1 cut(s)	441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.