Rorug04G0285200

Agenet domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0002343
Physical Location & Seq
Forward (+)
45894475 .. 45896242
1768 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0285200.1

Sequence Viewer

Length: 1104 bp
ATGGGTGGCATATTTATAGATGGAAAATTCATTCTTAGCATAATTTTTGCACTGTGGAGAATGTGTTTGGCAAAAGAAACTCCTGCTAATTTTGTGTTTGGGGATTCTCTGGTTGAAGTGGGGAACAACAACTACATTCCCTCACTCTCCAAGGCTGATTATCCTCCCAATGGAATCGATTTCGGAAAGCCTACCGGGCGATACACAAATGCAAGAACCGTCATTGACATTATAGGTCAGAGTGCTCTGGGTCTGAAGGAGTTCACTCCTCCTTACTTAGCTCCCACAACAGCTGGACCAGTAATTCTGAGGGGTGTCAACTATGCTTCAGGTGGAGGTGGAATTCTTAATGAAACAGGAAAAATATATGTTGGTAGAATAAACATGGATGCACAGATAGATAATTTTGCAAATACCAGACAAGACATTATCTCAAGCATTGGTCTTCCTGCAGCAGTAGAGCTACTTAGAAGAGCTCTCTTCTCAGTAACAATCGGCTCAAACGATTTCCTCAGTAACTACTTGGTGCCAGTTATAACTGAGGTTAAGAGGAAGTTGATACCACCGGAAACTTTTGTTGGCATTTTGATTGCAAGATTCAGACTACAACTTACAAGACTGTACAATTTGGGTGCAAGGAAGATGGTTGTGATAAATTTAGGACCTATTGGGTGTATACCCTTTGAGAGGGAAGTAAATCTGGTAGCTGATCCAGATAAGTGTGCTGAATTTCCAAATCAATTAGCACGGTCATTCAATGCCAAGCTAAGGACCCTTGTCACCGAGCTAAACAAGAATCTTCCCGGGGCCAAATTTGTGTATGGAAATGTTCATAGTATTGTGGAAGACATCATTGAGAACTACATATCATATGGTTTCGAGAATACAAACTCTGCATGCTGCAGTGTAGTAGGGCGCTACGGGGGTCTAATCTCATGTGGTCCTCAGCCCTCAATGGTTTGCGAGGACCGGTCGAAGTATGTGTTTTGGGATCCTTACCATCCTTCTGATGCTTCTAATATGATCATAGCAAGGCGTCTCTTGTATGGGAACTCCAGTGATATTTCACCCATGAATATTGTGCAACTCCTCCAAGCTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet BAH

Protein Analysis

367

Amino Acids

40.22

Weight (kDa)

8.38

Isoelectric Point (pI)

36.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 31 - 346 7.9e-29 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 536
AccB1I GGYRCC 1 cut(s) 526
AccI GTMKAC 1 cut(s) 676
AclWI GGATC 3 cut(s) 704, 986, 999
AcsI RAATTY 5 cut(s) 26, 342, 655, 728, 812
AcuI CTGAAG 2 cut(s) 275, 312
AcyI GRCGYC 1 cut(s) 1036
AfaI GTAC 1 cut(s) 623
AfiI CCNNNNNNNGG 3 cut(s) 170, 687, 768
AgeI ACCGGT 1 cut(s) 969
AgsI TTSAA 2 cut(s) 116, 757
AjuI GAANNNNNNNTTGG 2 cut(s) 561, 593
AluBI AGCT 8 cut(s) 281, 293, 463, 476, 707, 766, 787, 1097
AluI AGCT 8 cut(s) 281, 293, 463, 476, 707, 766, 787, 1097
Alw21I GWGCWC 2 cut(s) 247, 478
Alw26I GTCTC 1 cut(s) 1043
AlwI GGATC 3 cut(s) 704, 986, 999
Ama87I CYCGRG 1 cut(s) 803
AoxI GGCC 1 cut(s) 807
ApeKI GCWGC 2 cut(s) 452, 900
ApoI RAATTY 5 cut(s) 26, 342, 655, 728, 812
AsiGI ACCGGT 1 cut(s) 969
Asp700I GAANNNNTTC 1 cut(s) 260
AspLEI GCGC 1 cut(s) 918
AspS9I GGNCC 6 cut(s) 296, 662, 771, 807, 941, 967
AsuC2I CCSGG 3 cut(s) 196, 804, 805
AsuHPI GGTGA 2 cut(s) 772, 1059
AvaI CYCGRG 1 cut(s) 803
AvaII GGWCC 5 cut(s) 296, 662, 771, 941, 967
BamHI GGATCC 1 cut(s) 991
BanI GGYRCC 1 cut(s) 526
BanII GRGCYC 1 cut(s) 478
BbsI GAAGAC 2 cut(s) 437, 852
Bbv12I GWGCWC 2 cut(s) 247, 478
BbvCI CCTCAGC 1 cut(s) 945
BbvI GCAGC 2 cut(s) 464, 887
BccI CCATC 3 cut(s) 14, 637, 1008
BclI TGATCA 1 cut(s) 1023
BcnI CCSGG 3 cut(s) 196, 804, 805
BcoDI GTCTC 1 cut(s) 1043
BfmI CTRYAG 2 cut(s) 450, 901
BfoI RGCGCY 1 cut(s) 919
BglI GCCNNNNNGGC 1 cut(s) 196
BisI GCNGC 2 cut(s) 453, 901
BlsI GCNGC 2 cut(s) 454, 902
Bme1390I CCNGG 3 cut(s) 196, 804, 805
Bme18I GGWCC 5 cut(s) 296, 662, 771, 941, 967
BmeT110I CYCGRG 1 cut(s) 803
BmgT120I GGNCC 6 cut(s) 296, 662, 771, 807, 941, 967
BmiI GGNNCC 4 cut(s) 528, 773, 808, 993
BmrFI CCNGG 3 cut(s) 196, 804, 805
BmsI GCATC 2 cut(s) 379, 1000
BoxI GACNNNNGTC 1 cut(s) 776
BpiI GAAGAC 2 cut(s) 437, 852
BpmI CTGGAG 1 cut(s) 1039
Bpu10I CCTNAGC 2 cut(s) 767, 945
BpuEI CTTGAG 1 cut(s) 418
BpuMI CCSGG 3 cut(s) 196, 804, 805
Bsa29I ATCGAT 1 cut(s) 177
BsaHI GRCGYC 1 cut(s) 1036
BsaJI CCNNGG 3 cut(s) 150, 803, 804
BsaWI WCCGGW 2 cut(s) 565, 969
BsaXI ACNNNNNCTCC 2 cut(s) 49, 79
Bsc4I CCNNNNNNNGG 3 cut(s) 170, 687, 768
Bse118I RCCGGY 1 cut(s) 969
Bse1I ACTGG 3 cut(s) 299, 530, 1056
BseCI ATCGAT 1 cut(s) 177
BseDI CCNNGG 3 cut(s) 150, 803, 804
BseGI GGATG 2 cut(s) 394, 1000
BseLI CCNNNNNNNGG 3 cut(s) 170, 687, 768
BseMII CTCAG 5 cut(s) 299, 498, 526, 531, 959
BseNI ACTGG 3 cut(s) 299, 530, 1056
BseRI GAGGAG 2 cut(s) 258, 1079
BseXI GCAGC 2 cut(s) 464, 887
Bsh1285I CGRYCG 1 cut(s) 974
BshFI GGCC 1 cut(s) 809
BshNI GGYRCC 1 cut(s) 526
BshTI ACCGGT 1 cut(s) 969
BshVI ATCGAT 1 cut(s) 177
BsiEI CGRYCG 1 cut(s) 974
BsiHKAI GWGCWC 2 cut(s) 247, 478
BsiHKCI CYCGRG 1 cut(s) 803
BsiSI CCGG 4 cut(s) 195, 566, 804, 970
BslI CCNNNNNNNGG 3 cut(s) 170, 687, 768
BsmAI GTCTC 1 cut(s) 1043
BsmBI CGTCTC 1 cut(s) 1043
BsnI GGCC 1 cut(s) 809
BsoBI CYCGRG 1 cut(s) 803
Bsp1286I GDGCHC 2 cut(s) 247, 478
Bsp1407I TGTACA 1 cut(s) 621
Bsp143I GATC 3 cut(s) 709, 991, 1023
BspANI GGCC 1 cut(s) 809
BspCNI CTCAG 5 cut(s) 300, 497, 525, 532, 958
BspDI ATCGAT 1 cut(s) 177
BspLI GGNNCC 4 cut(s) 528, 773, 808, 993
BspMAI CTGCAG 2 cut(s) 454, 905
BspPI GGATC 3 cut(s) 704, 986, 999
BspQI GCTCTTC 1 cut(s) 466
BspT107I GGYRCC 1 cut(s) 526
BsrFI RCCGGY 1 cut(s) 969
BsrGI TGTACA 1 cut(s) 621
BsrI ACTGG 3 cut(s) 299, 530, 1056
BssAI RCCGGY 1 cut(s) 969
BssECI CCNNGG 3 cut(s) 150, 803, 804
BssMI GATC 3 cut(s) 709, 991, 1023
BssNAI GTATAC 1 cut(s) 677
BssNI GRCGYC 1 cut(s) 1036
BssT1I CCWWGG 1 cut(s) 150
Bst1107I GTATAC 1 cut(s) 677
Bst4CI ACNGT 4 cut(s) 54, 220, 621, 750
Bst6I CTCTTC 2 cut(s) 466, 485
BstACI GRCGYC 1 cut(s) 1036
BstAUI TGTACA 1 cut(s) 621
BstC8I GCNNGC 1 cut(s) 898
BstDEI CTNAG 9 cut(s) 35, 277, 308, 467, 484, 512, 540, 767, 945
BstENI CCTNNNNNAGG 1 cut(s) 685
BstF5I GGATG 2 cut(s) 394, 1000
BstH2I RGCGCY 1 cut(s) 919
BstHHI GCGC 1 cut(s) 918
BstKTI GATC 3 cut(s) 712, 994, 1026
BstMAI GTCTC 1 cut(s) 1043
BstMBI GATC 3 cut(s) 709, 991, 1023
BstMCI CGRYCG 1 cut(s) 974
BstMWI GCNNNNNNNGC 1 cut(s) 196
BstNSI RCATGY 1 cut(s) 900
BstPAI GACNNNNGTC 1 cut(s) 776
BstSCI CCNGG 3 cut(s) 194, 802, 803
BstSFI CTRYAG 2 cut(s) 450, 901
BstV1I GCAGC 2 cut(s) 464, 887
BstV2I GAAGAC 2 cut(s) 437, 852
BstX2I RGATCY 1 cut(s) 991
BstYI RGATCY 1 cut(s) 991
BstZ17I GTATAC 1 cut(s) 677
Bsu15I ATCGAT 1 cut(s) 177
BsuRI GGCC 1 cut(s) 809
BsuTUI ATCGAT 1 cut(s) 177
BtsCI GGATG 2 cut(s) 394, 1000
BtsI GCAGTG 1 cut(s) 910
BtsIMutI CAGTG 3 cut(s) 50, 910, 1063
Cac8I GCNNGC 1 cut(s) 898
CfoI GCGC 1 cut(s) 918
Cfr10I RCCGGY 1 cut(s) 969
Cfr13I GGNCC 6 cut(s) 296, 662, 771, 807, 941, 967
Cfr9I CCCGGG 1 cut(s) 803
ClaI ATCGAT 1 cut(s) 177
CseI GACGC 1 cut(s) 1025
Csp6I GTAC 1 cut(s) 622
CspAI ACCGGT 1 cut(s) 969
CviAII CATG 4 cut(s) 385, 897, 936, 1072
CviQI GTAC 1 cut(s) 622
DdeI CTNAG 9 cut(s) 35, 277, 308, 467, 484, 512, 540, 767, 945
DpnI GATC 3 cut(s) 711, 993, 1025
DpnII GATC 3 cut(s) 709, 991, 1023
Eam1104I CTCTTC 2 cut(s) 466, 485
EarI CTCTTC 2 cut(s) 466, 485
Ecl136II GAGCTC 1 cut(s) 476
Eco130I CCWWGG 1 cut(s) 150
Eco24I GRGCYC 1 cut(s) 478
Eco47I GGWCC 5 cut(s) 296, 662, 771, 941, 967
Eco53kI GAGCTC 1 cut(s) 476
Eco57I CTGAAG 2 cut(s) 275, 312
Eco88I CYCGRG 1 cut(s) 803
EcoICRI GAGCTC 1 cut(s) 476
EcoNI CCTNNNNNAGG 1 cut(s) 685
EcoO109I RGGNCCY 2 cut(s) 662, 771
EcoRI GAATTC 1 cut(s) 342
EcoT14I CCWWGG 1 cut(s) 150
EcoT38I GRGCYC 1 cut(s) 478
ErhI CCWWGG 1 cut(s) 150
Esp3I CGTCTC 1 cut(s) 1043
FaeI CATG 4 cut(s) 388, 900, 939, 1075
FatI CATG 4 cut(s) 384, 896, 935, 1071
FauNDI CATATG 1 cut(s) 871
FbaI TGATCA 1 cut(s) 1023
FblI GTMKAC 1 cut(s) 676
Fnu4HI GCNGC 2 cut(s) 453, 901
FokI GGATG 2 cut(s) 401, 987
FriOI GRGCYC 1 cut(s) 478
Fsp4HI GCNGC 2 cut(s) 453, 901
GlaI GCGC 1 cut(s) 917
GluI GCNGC 2 cut(s) 453, 901
GsuI CTGGAG 1 cut(s) 1039
HaeII RGCGCY 1 cut(s) 919
HaeIII GGCC 1 cut(s) 809
HapII CCGG 4 cut(s) 195, 566, 804, 970
HgaI GACGC 1 cut(s) 1025
HhaI GCGC 1 cut(s) 918
Hin1I GRCGYC 1 cut(s) 1036
Hin1II CATG 4 cut(s) 388, 900, 939, 1075
Hin6I GCGC 1 cut(s) 916
HinP1I GCGC 1 cut(s) 916
HincII GTYRAC 1 cut(s) 319
HindII GTYRAC 1 cut(s) 319
HindIII AAGCTT 1 cut(s) 1095
HinfI GANTC 4 cut(s) 104, 174, 597, 796
HpaII CCGG 4 cut(s) 195, 566, 804, 970
HphI GGTGA 2 cut(s) 772, 1059
Hpy166II GTNNAC 3 cut(s) 264, 319, 677
Hpy188I TCNGA 6 cut(s) 185, 240, 255, 309, 602, 1009
Hpy188III TCNNGA 3 cut(s) 713, 880, 1101
Hpy8I GTNNAC 3 cut(s) 264, 319, 677
HpyAV CCTTC 2 cut(s) 250, 1014
HpyCH4III ACNGT 4 cut(s) 54, 220, 621, 750
HpyF10VI GCNNNNNNNGC 1 cut(s) 196
HpyF3I CTNAG 9 cut(s) 35, 277, 308, 467, 484, 512, 540, 767, 945
Hsp92I GRCGYC 1 cut(s) 1036
Hsp92II CATG 4 cut(s) 388, 900, 939, 1075
HspAI GCGC 1 cut(s) 916
Ksp22I TGATCA 1 cut(s) 1023
Kzo9I GATC 3 cut(s) 709, 991, 1023
LguI GCTCTTC 1 cut(s) 466
LmnI GCTCC 1 cut(s) 286
Lsp1109I GCAGC 2 cut(s) 464, 887
LweI GCATC 2 cut(s) 379, 1000
MaeIII GTNAC 3 cut(s) 487, 515, 778
MalI GATC 3 cut(s) 711, 993, 1025
MboI GATC 3 cut(s) 709, 991, 1023
MboII GAAGA 6 cut(s) 437, 472, 483, 652, 791, 857
MflI RGATCY 1 cut(s) 991
MhlI GDGCHC 2 cut(s) 247, 478
MroXI GAANNNNTTC 1 cut(s) 260
MseI TTAA 2 cut(s) 348, 546
MspA1I CMGCKG 1 cut(s) 293
MspI CCGG 4 cut(s) 195, 566, 804, 970
MspR9I CCNGG 3 cut(s) 196, 804, 805
MwoI GCNNNNNNNGC 1 cut(s) 196
NciI CCSGG 3 cut(s) 196, 804, 805
NdeI CATATG 1 cut(s) 871
NdeII GATC 3 cut(s) 709, 991, 1023
NlaIII CATG 4 cut(s) 388, 900, 939, 1075
NlaIV GGNNCC 4 cut(s) 528, 773, 808, 993
NmuCI GTSAC 1 cut(s) 778
NspI RCATGY 1 cut(s) 900
PaeI GCATGC 1 cut(s) 900
PciSI GCTCTTC 1 cut(s) 466
PcsI WCGNNNNNNNCGW 1 cut(s) 501
PdmI GAANNNNTTC 1 cut(s) 260
PfeI GAWTC 4 cut(s) 104, 174, 597, 796
PinAI ACCGGT 1 cut(s) 969
PkrI GCNGC 2 cut(s) 454, 902
PpuMI RGGWCCY 2 cut(s) 662, 771
PshAI GACNNNNGTC 1 cut(s) 776
PsiI TTATAA 1 cut(s) 536
Psp124BI GAGCTC 1 cut(s) 478
Psp5II RGGWCCY 2 cut(s) 662, 771
PspN4I GGNNCC 4 cut(s) 528, 773, 808, 993
PspPI GGNCC 6 cut(s) 296, 662, 771, 807, 941, 967
PspPPI RGGWCCY 2 cut(s) 662, 771
PsrI GAACNNNNNNTAC 2 cut(s) 116, 148
PstI CTGCAG 2 cut(s) 454, 905
PsuI RGATCY 1 cut(s) 991
PvuII CAGCTG 1 cut(s) 293
RsaI GTAC 1 cut(s) 623
RsaNI GTAC 1 cut(s) 622
SacI GAGCTC 1 cut(s) 478
SapI GCTCTTC 1 cut(s) 466
SaqAI TTAA 2 cut(s) 348, 546
SatI GCNGC 2 cut(s) 453, 901
Sau3AI GATC 3 cut(s) 709, 991, 1023
Sau96I GGNCC 6 cut(s) 296, 662, 771, 807, 941, 967
ScrFI CCNGG 3 cut(s) 196, 804, 805
SduI GDGCHC 2 cut(s) 247, 478
SfaNI GCATC 2 cut(s) 379, 1000
SfcI CTRYAG 2 cut(s) 450, 901
SinI GGWCC 5 cut(s) 296, 662, 771, 941, 967
SmaI CCCGGG 1 cut(s) 805
SmlI CTYRAG 1 cut(s) 433
SmoI CTYRAG 1 cut(s) 433
SphI GCATGC 1 cut(s) 900
SspI AATATT 1 cut(s) 1078
SstI GAGCTC 1 cut(s) 478
StyD4I CCNGG 3 cut(s) 194, 802, 803
StyI CCWWGG 1 cut(s) 150
TaaI ACNGT 4 cut(s) 54, 220, 621, 750
TaqI TCGA 3 cut(s) 177, 879, 974
TatI WGTACW 1 cut(s) 621
TfiI GAWTC 4 cut(s) 104, 174, 597, 796
Tru1I TTAA 2 cut(s) 348, 546
Tru9I TTAA 2 cut(s) 348, 546
TscAI CASTG 3 cut(s) 57, 910, 1063
TseFI GTSAC 1 cut(s) 778
TseI GCWGC 2 cut(s) 452, 900
Tsp45I GTSAC 1 cut(s) 778
TspDTI ATGAA 4 cut(s) 19, 366, 821, 1088
TspMI CCCGGG 1 cut(s) 803
TspRI CASTG 3 cut(s) 57, 910, 1063
VpaK11BI GGWCC 5 cut(s) 296, 662, 771, 941, 967
XagI CCTNNNNNAGG 1 cut(s) 685
XapI RAATTY 5 cut(s) 26, 342, 655, 728, 812
XceI RCATGY 1 cut(s) 900
XmaI CCCGGG 1 cut(s) 803
XmiI GTMKAC 1 cut(s) 676
XmnI GAANNNNTTC 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.