Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0002343

Physical Location & Seq

Genomic Coordinates Reverse (-)

8752789 .. 8756554

Gene Structure 3766 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006591

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2070 bp

ATGGAGAGATTGGCGGAGGCGGCCACCACGGCGGCGCTGGGGTTCGTGAGGTGGGAGGAGGTGTTTGTGTCCTCTGATAAAGGGCGGAGAGAGGTTCATTACTATCTGAAGCGGAGCGACGGGAGCTCAGATCTGGCTGTGATAGGCAAAGAGAAGAGCTTGAGGCACATGTCCTATCACTATGCCTTTCGAAACCGGTCTTTGTTCCCGGCGTCTTCGCTGGTTAAGCTCAAGTCGCGTAGAGAGGTCGTCGATTGGCTCAAGTCTGTGGTTTCAGATGTGCTGCCTCGAGTACCATCTCGTTTAGATGGAAGCATGTTGGATGGTAAAGATGCTGGCGAGGTGGATATTGAACTTTTGAAGGTTACTCACTTACGGAAGATGGGCCGCTATACTACAGAGTTTATGTGGTTAGGTTCTCCTTTAAAGGGAAGGAAAAAACGGAGGCATTACCAATCATTCAGCCGTAATGGAGTTATAGTTTCTGTTCATGACTTTGTATTTGTTTTAGCAGAGGAGGATAAGCGTCTTGTTGCGTACTTAGAAGATATGTACGAGGACTCTAAGGGTAACAAGATGGTTGTTGTTCGCTGGTTTCACAAAGTTGATGAGGTTGGTATGGTCTTGCCTCTCAATTTTAATGACAGAGAGATTTTCTTTTCTCTCTGTCACCAACATCTCAGTATTGAATGCATTGATGGATTGGCTACTGTCCTCAGCCCTGTGCATTTTGAGAAATTTCTGAAAGAGGCAAAGCAAACACAGCTGGAACCCTTTGTATGTCATAAACAGTTTGAAAATGATGATGTAAAGCCCTTCGACATTACTCAAGTTGAAGGTTATTGGAAACAGGAGATACTTAGATACATGCACACAGTTACCCCTTCAAAGGTTCCCGTCAGTTCTCAACAATCTGTTGATGAGTTGAAAGCGGAAGAAGTTGCTCATGCCAGTGATATCAGACCTAAAAAGAGGCAGCGTTCTTTAAAAGATGATGATATGCATGGTGAAGGTATTGAAAGAAGGGTGTCACTGGGTGCAGCATGTGGGGAAGCAGGCTATATAAGTAAAAATGTGACTGATTGTAAAAGTGAAGCCTTCAGCCTTGGTAAGAGAGGTTCTGCTGTTGTTTTACCTTGTCCAGATGTGAAACAAATCCTGCCGCAGTATCTAGCAGTAGGTTCCCAGGTTGAGGTCCTGTCCCAAGATAGTGGCATTAGAGGGTGTTGGTTTAGAGCATTGATTATCAAGAAGCATAAAGATAAAGTTAAGGTGCAATATCAAGATATTCAGGATGCAGCTGATGAAGCTAACAAACTTGAGGAATGGATTTTAGCGTCAAAGATTGCAGCTCCTGATCAATTGGGTCTTCGGCTTTCTGAGAGGCCAAGTATTCGGCCATGTATAAAGTCAAATAAAGGTAGAGTTTCATGGTCTGTTGATGTTGGGAGTGTTGTTGATGTCTGGAGGCATGATGGTTGGTGGGAAGGCATAGTACTTCAGAAGGACTGTGATGACAGACTTCACGTATACTTCCCAGGAGAGAATCAGGTTTTGATTGCGGGGCGTAGTGAAGTGCGACATTCTCAAGAGTGGCTGGGGAGAGAGTGGGCTTATATGAAGGACAGGCCAGACCTTGTGGCCTCAATATCAAGTAATTTAGAAACTAAGAAAACTGTTGGAAACTCATTTGATGGTGTGTCAGGGCTGTCTGAAATCGTTGATAGCAGAGAGTTGAAGAAACATGAAACATCTGCTCTTTCCTCTGATAGTGACAAGGATGAAAAAGTAAATGAAGTCGATAAGGTTCCAGATCTTTTGAAGGATGATCTCTTTGCCAAGCTGAAGTGGAAGTCTTCGAGGAAGAGAAGACGTGGTAATGGAAGCTCTGCCCAAAAGTTGCATTTTGGTAGTGATGGTAAAAGCACCTCTGGCCTCATGGGATCCAAATCTTGTGAAAGATATTTGATTCCATCGTCTCTCATGGTTGACCACGAGAACTGCAAATATTTAGGGGATTCTCTGTTCAGTTCATCAGTTGCGCCTTCTCTAACAAGCTTAGTTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Agenet BAH

Protein Analysis

690

Amino Acids

78.07

Weight (kDa)

8.41

Isoelectric Point (pI)

51.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BAH	PF01426	161 - 269	5.5e-10	BAH domain
Agenet	PF05641	394 - 468	6.9e-18	Agenet domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002343)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68580 AT1G68580 AT1G68580 AT1G68580 AT1G68580
fragaria_vesca	FvH4_4g27610 FvH4_4g27610 FvH4_4g27610 FvH4_4g27610 FvH4_4g27610 FvH4_4g27610 FvH4_4g27610 FvH4_4g27610
malus_domestica	MD13G1043500.v1.1 MD16G1044300.v1.1
prunus_persica	Prupe.1G309000_v2.0.a1 Prupe.1G309000_v2.0.a1 Prupe.1G309000_v2.0.a1
pyrus_communis	pycom13g03830 pycom16g03850
rosa_chinensis	RchiOBHm_Chr3g0482621 RchiOBHm_Chr3g0482631 RchiOBHm_Chr3g0482641 RchiOBHm_Chr4g0435461
rosa_laevigata	RLG00000006591
rosa_multiflora	Rmu_sc0006069.1_g000002 Rmu_sc0015893.1_g000006 Rmu_sc0015893.1_g000007
rosa_roxburghii	Rroxscaffold_3G00234330 Rroxscaffold_5G00376690
rosa_rugosa	Rorug04G0285200
rosa_samantha	Rh3AG248900 Rh3CG281900 Rh3CG282000 Rh3CG282100 Rh3DG278100 Rh4AG340900 Rh4BG349200 Rh4CG363700 Rh4DG343400
rosa_wichuraiana	Rw3G022470 Rw4G029730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1530
AccII	CGCG	1 cut(s)	238
AciI	CCGC	9 cut(s)	14, 20, 32, 85, 112, 388, 932, 1163, 1562
AclWI	GGATC	2 cut(s)	1938, 1951
AcoI	YGGCCR	2 cut(s)	21, 1397
AcsI	RAATTY	1 cut(s)	737
AcuI	CTGAAG	4 cut(s)	128, 1084, 1484, 1865
AcyI	GRCGYC	1 cut(s)	212
AdeI	CACNNNGTG	1 cut(s)	1037
AfaI	GTAC	4 cut(s)	294, 539, 554, 1497
AfiI	CCNNNNNNNGG	3 cut(s)	428, 889, 1192
AflIII	ACRYGT	1 cut(s)	168
AgeI	ACCGGT	1 cut(s)	195
AjiI	CACGTC	1 cut(s)	1874
AjnI	CCWGG	2 cut(s)	1185, 1537
AloI	GAACNNNNNNTCC	2 cut(s)	2009, 2041
Alw21I	GWGCWC	1 cut(s)	128
Alw26I	GTCTC	1 cut(s)	1983
AlwI	GGATC	2 cut(s)	1938, 1951
AlwNI	CAGNNNCTG	1 cut(s)	1355
Ama87I	CYCGRG	1 cut(s)	288
AoxI	GGCC	7 cut(s)	21, 385, 1385, 1397, 1628, 1641, 1933
ApeKI	GCWGC	5 cut(s)	283, 976, 1040, 1298, 1349
ApoI	RAATTY	1 cut(s)	737
ArsI	GACNNNNNNTTYG	2 cut(s)	485, 517
AsiGI	ACCGGT	1 cut(s)	195
AspLEI	GCGC	2 cut(s)	37, 2044
AspS9I	GGNCC	2 cut(s)	385, 1195
AsuC2I	CCSGG	1 cut(s)	209
AsuHPI	GGTGA	2 cut(s)	662, 1019
AsuII	TTCGAA	1 cut(s)	190
AvaI	CYCGRG	1 cut(s)	288
AvaII	GGWCC	1 cut(s)	1195
BamHI	GGATCC	1 cut(s)	1943
BanII	GRGCYC	1 cut(s)	128
BarI	GAAGNNNNNNTAC	2 cut(s)	1479, 1511
BauI	CACGAG	1 cut(s)	1994
BbsI	GAAGAC	4 cut(s)	207, 1361, 1848, 1876
Bbv12I	GWGCWC	1 cut(s)	128
BbvCI	CCTCAGC	1 cut(s)	716
BbvI	GCAGC	5 cut(s)	270, 988, 1052, 1310, 1361
BceAI	ACGGC	2 cut(s)	45, 450
BciT130I	CCWGG	2 cut(s)	1187, 1539
BclI	TGATCA	1 cut(s)	1357
BcnI	CCSGG	1 cut(s)	209
BcoDI	GTCTC	1 cut(s)	1983
BfaI	CTAG	1 cut(s)	1172
BfmI	CTRYAG	1 cut(s)	396
BfoI	RGCGCY	1 cut(s)	38
BglI	GCCNNNNNGGC	1 cut(s)	29
BglII	AGATCT	2 cut(s)	130, 1813
BisI	GCNGC	9 cut(s)	21, 33, 284, 388, 977, 1041, 1163, 1299, 1350
BlsI	GCNGC	9 cut(s)	22, 34, 285, 389, 978, 1042, 1164, 1300, 1351
BmcAI	AGTACT	1 cut(s)	1497
Bme1390I	CCNGG	3 cut(s)	209, 1187, 1539
Bme18I	GGWCC	1 cut(s)	1195
BmeT110I	CYCGRG	1 cut(s)	288
BmgBI	CACGTC	1 cut(s)	1874
BmgT120I	GGNCC	2 cut(s)	385, 1195
BmiI	GGNNCC	5 cut(s)	771, 894, 1183, 1809, 1945
BmrFI	CCNGG	3 cut(s)	209, 1187, 1539
BmrI	ACTGGG	1 cut(s)	1043
BmsI	GCATC	2 cut(s)	322, 1285
BmuI	ACTGGG	1 cut(s)	1043
BpiI	GAAGAC	4 cut(s)	207, 1361, 1848, 1876
BpmI	CTGGAG	1 cut(s)	1486
Bpu10I	CCTNAGC	1 cut(s)	716
Bpu14I	TTCGAA	1 cut(s)	190
BpuEI	CTTGAG	6 cut(s)	181, 215, 245, 813, 1340, 1572
BpuMI	CCSGG	1 cut(s)	209
BsaAI	YACGTR	1 cut(s)	1528
BsaBI	GATNNNNATC	1 cut(s)	1948
BsaHI	GRCGYC	1 cut(s)	212
BsaJI	CCNNGG	4 cut(s)	27, 1105, 1185, 1537
BsaWI	WCCGGW	1 cut(s)	195
BsaXI	ACNNNNNCTCC	4 cut(s)	47, 77, 465, 495
Bsc4I	CCNNNNNNNGG	3 cut(s)	428, 889, 1192
Bse118I	RCCGGY	1 cut(s)	195
Bse1I	ACTGG	2 cut(s)	951, 1038
Bse8I	GATNNNNATC	1 cut(s)	1948
BseBI	CCWGG	2 cut(s)	1187, 1539
BseDI	CCNNGG	4 cut(s)	27, 1105, 1185, 1537
BseGI	GGATG	4 cut(s)	328, 1300, 1786, 1831
BseJI	GATNNNNATC	1 cut(s)	1948
BseLI	CCNNNNNNNGG	3 cut(s)	428, 889, 1192
BseMII	CTCAG	4 cut(s)	141, 694, 730, 1371
BseNI	ACTGG	2 cut(s)	951, 1038
BseRI	GAGGAG	2 cut(s)	71, 530
BseXI	GCAGC	5 cut(s)	270, 988, 1052, 1310, 1361
BseYI	CCCAGC	2 cut(s)	37, 1597
BsgI	GTGCAG	1 cut(s)	1059
Bsh1236I	CGCG	1 cut(s)	238
BshFI	GGCC	7 cut(s)	23, 387, 1387, 1399, 1630, 1643, 1935
BshTI	ACCGGT	1 cut(s)	195
BsiHKAI	GWGCWC	1 cut(s)	128
BsiHKCI	CYCGRG	1 cut(s)	288
BsiSI	CCGG	2 cut(s)	196, 209
BslFI	GGGAC	1 cut(s)	1186
BslI	CCNNNNNNNGG	3 cut(s)	428, 889, 1192
BsmAI	GTCTC	1 cut(s)	1983
BsmBI	CGTCTC	1 cut(s)	1983
BsmFI	GGGAC	1 cut(s)	1186
BsmI	GAATGC	1 cut(s)	695
BsnI	GGCC	7 cut(s)	23, 387, 1387, 1399, 1630, 1643, 1935
BsoBI	CYCGRG	1 cut(s)	288
Bsp119I	TTCGAA	1 cut(s)	190
Bsp1286I	GDGCHC	1 cut(s)	128
Bsp143I	GATC	5 cut(s)	130, 1357, 1813, 1828, 1943
BspACI	CCGC	9 cut(s)	14, 20, 32, 85, 112, 388, 932, 1163, 1562
BspANI	GGCC	7 cut(s)	23, 387, 1387, 1399, 1630, 1643, 1935
BspCNI	CTCAG	4 cut(s)	140, 693, 729, 1372
BspFNI	CGCG	1 cut(s)	238
BspHI	TCATGA	1 cut(s)	490
BspLI	GGNNCC	5 cut(s)	771, 894, 1183, 1809, 1945
BspPI	GGATC	2 cut(s)	1938, 1951
BspQI	GCTCTTC	1 cut(s)	149
BspT104I	TTCGAA	1 cut(s)	190
BsrFI	RCCGGY	1 cut(s)	195
BsrI	ACTGG	2 cut(s)	951, 1038
BssAI	RCCGGY	1 cut(s)	195
BssECI	CCNNGG	4 cut(s)	27, 1105, 1185, 1537
BssMI	GATC	5 cut(s)	130, 1357, 1813, 1828, 1943
BssNAI	GTATAC	1 cut(s)	1531
BssNI	GRCGYC	1 cut(s)	212
BssSI	CACGAG	1 cut(s)	1994
BssT1I	CCWWGG	1 cut(s)	1105
Bst1107I	GTATAC	1 cut(s)	1531
Bst2BI	CACGAG	1 cut(s)	1994
Bst2UI	CCWGG	2 cut(s)	1187, 1539
Bst4CI	ACNGT	5 cut(s)	712, 792, 877, 1511, 1678
Bst6I	CTCTTC	2 cut(s)	149, 1859
BstACI	GRCGYC	1 cut(s)	212
BstBAI	YACGTR	1 cut(s)	1528
BstBI	TTCGAA	1 cut(s)	190
BstC8I	GCNNGC	2 cut(s)	337, 1057
BstDEI	CTNAG	9 cut(s)	127, 541, 564, 680, 716, 860, 1380, 1668, 2059
BstDSI	CCRYGG	1 cut(s)	27
BstF5I	GGATG	4 cut(s)	328, 1300, 1786, 1831
BstFNI	CGCG	1 cut(s)	238
BstH2I	RGCGCY	1 cut(s)	38
BstHHI	GCGC	2 cut(s)	37, 2044
BstKTI	GATC	5 cut(s)	133, 1360, 1816, 1831, 1946
BstMAI	GTCTC	1 cut(s)	1983
BstMBI	GATC	5 cut(s)	130, 1357, 1813, 1828, 1943
BstMWI	GCNNNNNNNGC	8 cut(s)	20, 29, 123, 226, 235, 763, 1307, 1932
BstNI	CCWGG	2 cut(s)	1187, 1539
BstNSI	RCATGY	4 cut(s)	172, 319, 871, 1047
BstSCI	CCNGG	3 cut(s)	207, 1185, 1537
BstSFI	CTRYAG	1 cut(s)	396
BstUI	CGCG	1 cut(s)	238
BstV1I	GCAGC	5 cut(s)	270, 988, 1052, 1310, 1361
BstV2I	GAAGAC	4 cut(s)	207, 1361, 1848, 1876
BstX2I	RGATCY	3 cut(s)	130, 1813, 1943
BstXI	CCANNNNNNTGG	1 cut(s)	1211
BstYI	RGATCY	3 cut(s)	130, 1813, 1943
BstZ17I	GTATAC	1 cut(s)	1531
BsuRI	GGCC	7 cut(s)	23, 387, 1387, 1399, 1630, 1643, 1935
BtgI	CCRYGG	1 cut(s)	27
BtrI	CACGTC	1 cut(s)	1874
BtsCI	GGATG	4 cut(s)	328, 1300, 1786, 1831
BtsIMutI	CAGTG	2 cut(s)	958, 1031
Cac8I	GCNNGC	2 cut(s)	337, 1057
CaiI	CAGNNNCTG	1 cut(s)	1355
CciI	TCATGA	1 cut(s)	490
CfoI	GCGC	2 cut(s)	37, 2044
Cfr10I	RCCGGY	1 cut(s)	195
Cfr13I	GGNCC	2 cut(s)	385, 1195
CseI	GACGC	3 cut(s)	201, 515, 1326
Csp6I	GTAC	4 cut(s)	293, 538, 553, 1496
CspAI	ACCGGT	1 cut(s)	195
CviQI	GTAC	4 cut(s)	293, 538, 553, 1496
DdeI	CTNAG	9 cut(s)	127, 541, 564, 680, 716, 860, 1380, 1668, 2059
DpnI	GATC	5 cut(s)	132, 1359, 1815, 1830, 1945
DpnII	GATC	5 cut(s)	130, 1357, 1813, 1828, 1943
DraI	TTTAAA	2 cut(s)	426, 987
DraIII	CACNNNGTG	1 cut(s)	1037
EaeI	YGGCCR	2 cut(s)	21, 1397
Eam1104I	CTCTTC	2 cut(s)	149, 1859
EarI	CTCTTC	2 cut(s)	149, 1859
EciI	GGCGGA	2 cut(s)	29, 100
Ecl136II	GAGCTC	1 cut(s)	126
Eco130I	CCWWGG	1 cut(s)	1105
Eco24I	GRGCYC	1 cut(s)	128
Eco32I	GATATC	1 cut(s)	958
Eco47I	GGWCC	1 cut(s)	1195
Eco53kI	GAGCTC	1 cut(s)	126
Eco57I	CTGAAG	4 cut(s)	128, 1084, 1484, 1865
Eco88I	CYCGRG	1 cut(s)	288
EcoICRI	GAGCTC	1 cut(s)	126
EcoO109I	RGGNCCY	1 cut(s)	1195
EcoRII	CCWGG	2 cut(s)	1185, 1537
EcoRV	GATATC	1 cut(s)	958
EcoT14I	CCWWGG	1 cut(s)	1105
EcoT22I	ATGCAT	2 cut(s)	695, 1005
EcoT38I	GRGCYC	1 cut(s)	128
ErhI	CCWWGG	1 cut(s)	1105
Esp3I	CGTCTC	1 cut(s)	1983
FaqI	GGGAC	1 cut(s)	1186
FauI	CCCGC	1 cut(s)	1555
FbaI	TGATCA	1 cut(s)	1357
FblI	GTMKAC	1 cut(s)	1530
Fnu4HI	GCNGC	9 cut(s)	21, 33, 284, 388, 977, 1041, 1163, 1299, 1350
FokI	GGATG	4 cut(s)	335, 1307, 1793, 1838
FriOI	GRGCYC	1 cut(s)	128
Fsp4HI	GCNGC	9 cut(s)	21, 33, 284, 388, 977, 1041, 1163, 1299, 1350
FspBI	CTAG	1 cut(s)	1172
GlaI	GCGC	2 cut(s)	36, 2043
GluI	GCNGC	9 cut(s)	21, 33, 284, 388, 977, 1041, 1163, 1299, 1350
GsaI	CCCAGC	2 cut(s)	41, 1601
GsuI	CTGGAG	1 cut(s)	1486
HaeII	RGCGCY	1 cut(s)	38
HaeIII	GGCC	7 cut(s)	23, 387, 1387, 1399, 1630, 1643, 1935
HapII	CCGG	2 cut(s)	196, 209
HgaI	GACGC	3 cut(s)	201, 515, 1326
HhaI	GCGC	2 cut(s)	37, 2044
Hin1I	GRCGYC	1 cut(s)	212
Hin6I	GCGC	2 cut(s)	35, 2042
HinP1I	GCGC	2 cut(s)	35, 2042
HincII	GTYRAC	1 cut(s)	1990
HindII	GTYRAC	1 cut(s)	1990
HindIII	AAGCTT	1 cut(s)	2056
HinfI	GANTC	4 cut(s)	560, 1546, 1969, 2018
HpaII	CCGG	2 cut(s)	196, 209
HphI	GGTGA	2 cut(s)	662, 1019
Hpy166II	GTNNAC	2 cut(s)	1531, 1990
Hpy8I	GTNNAC	2 cut(s)	1531, 1990
Hpy99I	CGWCG	2 cut(s)	122, 254
HpyCH4III	ACNGT	5 cut(s)	712, 792, 877, 1511, 1678
HpyCH4IV	ACGT	2 cut(s)	1527, 1873
HpyF10VI	GCNNNNNNNGC	8 cut(s)	20, 29, 123, 226, 235, 763, 1307, 1932
HpyF3I	CTNAG	9 cut(s)	127, 541, 564, 680, 716, 860, 1380, 1668, 2059
HpySE526I	ACGT	2 cut(s)	1527, 1873
Hsp92I	GRCGYC	1 cut(s)	212
HspAI	GCGC	2 cut(s)	35, 2042
Ksp22I	TGATCA	1 cut(s)	1357
Kzo9I	GATC	5 cut(s)	130, 1357, 1813, 1828, 1943
LguI	GCTCTTC	1 cut(s)	149
LmnI	GCTCC	3 cut(s)	114, 123, 1357
Lsp1109I	GCAGC	5 cut(s)	270, 988, 1052, 1310, 1361
LweI	GCATC	2 cut(s)	322, 1285
MaeI	CTAG	1 cut(s)	1172
MaeII	ACGT	2 cut(s)	1527, 1873
MaeIII	GTNAC	7 cut(s)	364, 569, 668, 877, 1029, 1075, 1772
MalI	GATC	5 cut(s)	132, 1359, 1815, 1830, 1945
MboI	GATC	5 cut(s)	130, 1357, 1813, 1828, 1943
MfeI	CAATTG	1 cut(s)	1361
MflI	RGATCY	3 cut(s)	130, 1813, 1943
MhlI	GDGCHC	1 cut(s)	128
MluCI	AATT	4 cut(s)	634, 737, 1361, 1657
MlyI	GAGTC	1 cut(s)	554
MmeI	TCCRAC	2 cut(s)	300, 1660
Mph1103I	ATGCAT	2 cut(s)	695, 1005
MseI	TTAA	5 cut(s)	225, 425, 639, 986, 1269
MslI	CAYNNNNRTG	1 cut(s)	951
MspA1I	CMGCKG	2 cut(s)	766, 1301
MspI	CCGG	2 cut(s)	196, 209
MspR9I	CCNGG	3 cut(s)	209, 1187, 1539
MunI	CAATTG	1 cut(s)	1361
Mva1269I	GAATGC	1 cut(s)	695
MvaI	CCWGG	2 cut(s)	1187, 1539
MvnI	CGCG	1 cut(s)	238
MwoI	GCNNNNNNNGC	8 cut(s)	20, 29, 123, 226, 235, 763, 1307, 1932
NciI	CCSGG	1 cut(s)	209
NdeII	GATC	5 cut(s)	130, 1357, 1813, 1828, 1943
NlaIV	GGNNCC	5 cut(s)	771, 894, 1183, 1809, 1945
NmuCI	GTSAC	4 cut(s)	668, 1029, 1075, 1772
NsiI	ATGCAT	2 cut(s)	695, 1005
NspI	RCATGY	4 cut(s)	172, 319, 871, 1047
NspV	TTCGAA	1 cut(s)	190
PaeR7I	CTCGAG	1 cut(s)	288
PagI	TCATGA	1 cut(s)	490
PciI	ACATGT	1 cut(s)	168
PciSI	GCTCTTC	1 cut(s)	149
PctI	GAATGC	1 cut(s)	695
PfeI	GAWTC	3 cut(s)	1546, 1969, 2018
PinAI	ACCGGT	1 cut(s)	195
PkrI	GCNGC	9 cut(s)	22, 34, 285, 389, 978, 1042, 1164, 1300, 1351
PleI	GAGTC	1 cut(s)	554
PpsI	GAGTC	1 cut(s)	554
Ppu21I	YACGTR	1 cut(s)	1528
PpuMI	RGGWCCY	1 cut(s)	1195
PscI	ACATGT	1 cut(s)	168
Psp124BI	GAGCTC	1 cut(s)	128
Psp5II	RGGWCCY	1 cut(s)	1195
Psp6I	CCWGG	2 cut(s)	1185, 1537
PspFI	CCCAGC	2 cut(s)	37, 1597
PspGI	CCWGG	2 cut(s)	1185, 1537
PspN4I	GGNNCC	5 cut(s)	771, 894, 1183, 1809, 1945
PspPI	GGNCC	2 cut(s)	385, 1195
PspPPI	RGGWCCY	1 cut(s)	1195
PspXI	VCTCGAGB	1 cut(s)	288
PsrI	GAACNNNNNNTAC	2 cut(s)	1102, 1134
PstNI	CAGNNNCTG	1 cut(s)	1355
PsuI	RGATCY	3 cut(s)	130, 1813, 1943
PvuII	CAGCTG	2 cut(s)	766, 1301
RsaI	GTAC	4 cut(s)	294, 539, 554, 1497
RsaNI	GTAC	4 cut(s)	293, 538, 553, 1496
RseI	CAYNNNNRTG	1 cut(s)	951
SacI	GAGCTC	1 cut(s)	128
SapI	GCTCTTC	1 cut(s)	149
SaqAI	TTAA	5 cut(s)	225, 425, 639, 986, 1269
SatI	GCNGC	9 cut(s)	21, 33, 284, 388, 977, 1041, 1163, 1299, 1350
Sau3AI	GATC	5 cut(s)	130, 1357, 1813, 1828, 1943
Sau96I	GGNCC	2 cut(s)	385, 1195
ScaI	AGTACT	1 cut(s)	1497
SchI	GAGTC	1 cut(s)	554
ScrFI	CCNGG	3 cut(s)	209, 1187, 1539
SduI	GDGCHC	1 cut(s)	128
SfaNI	GCATC	2 cut(s)	322, 1285
SfcI	CTRYAG	1 cut(s)	396
Sfr274I	CTCGAG	1 cut(s)	288
SfuI	TTCGAA	1 cut(s)	190
SinI	GGWCC	1 cut(s)	1195
SlaI	CTCGAG	1 cut(s)	288
SmiMI	CAYNNNNRTG	1 cut(s)	951
SmlI	CTYRAG	7 cut(s)	160, 230, 260, 288, 828, 1319, 1587
SmoI	CTYRAG	7 cut(s)	160, 230, 260, 288, 828, 1319, 1587
Sse9I	AATT	4 cut(s)	634, 737, 1361, 1657
SsiI	CCGC	9 cut(s)	14, 20, 32, 85, 112, 388, 932, 1163, 1562
SspI	AATATT	1 cut(s)	2009
SspMI	CTAG	1 cut(s)	1172
SstI	GAGCTC	1 cut(s)	128
StyD4I	CCNGG	3 cut(s)	207, 1185, 1537
StyI	CCWWGG	1 cut(s)	1105
TaaI	ACNGT	5 cut(s)	712, 792, 877, 1511, 1678
TaiI	ACGT	2 cut(s)	1530, 1876
TaqI	TCGA	6 cut(s)	190, 252, 289, 819, 1800, 1859
TasI	AATT	4 cut(s)	634, 737, 1361, 1657
TatI	WGTACW	1 cut(s)	1495
TauI	GCSGC	4 cut(s)	23, 35, 390, 1165
TfiI	GAWTC	3 cut(s)	1546, 1969, 2018
Tru1I	TTAA	5 cut(s)	225, 425, 639, 986, 1269
Tru9I	TTAA	5 cut(s)	225, 425, 639, 986, 1269
TscAI	CASTG	2 cut(s)	958, 1038
TseFI	GTSAC	4 cut(s)	668, 1029, 1075, 1772
TseI	GCWGC	5 cut(s)	283, 976, 1040, 1298, 1349
Tsp45I	GTSAC	4 cut(s)	668, 1029, 1075, 1772
TspDTI	ATGAA	9 cut(s)	86, 479, 1320, 1419, 1634, 1761, 1797, 1809, 2022
TspGWI	ACGGA	2 cut(s)	391, 457
TspRI	CASTG	2 cut(s)	958, 1038
VpaK11BI	GGWCC	1 cut(s)	1195
XapI	RAATTY	1 cut(s)	737
XceI	RCATGY	4 cut(s)	172, 319, 871, 1047
XcmI	CCANNNNNNNNNTGG	1 cut(s)	34
XhoI	CTCGAG	1 cut(s)	288
XmiI	GTMKAC	1 cut(s)	1530
XspI	CTAG	1 cut(s)	1172
ZrmI	AGTACT	1 cut(s)	1497
Zsp2I	ATGCAT	2 cut(s)	695, 1005

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.