Rh3CG281900

Agenet domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0002343
Physical Location & Seq
Reverse (-)
28391316 .. 28392183
868 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG281900.1

Sequence Viewer

Length: 453 bp
ATGAAGGACAGGCCAGACCTTGTGGTCTCAATATCAAGTACTTTAGAAACCAAGAAAACTGTTGGAAACTCATTTGATGGCATGTTAGGACTGTCTGAAATCAGTGATAGCAGAGAGTTGAAGAAACTTGAAACATCTGCTCTTTCCTCTCATAATGACAAGGATGAAAAAGTCAATGAAGTCAATAAGGTTCCAGATCTTTTGCAGGATGATCTCTTTGCCCAGCCGAAGTGGAAGTCTTTGAGGAAGAGAAGACATGGTAATGGAAGCTCTGCCCGAAAGCTGCATTTTGGTAGTGATGGTAAAAGCACCTCTGGCCTCATGGGATCAAAATCTTGTGGAAGATATTTGATTCCATCATCTCTCATGGTTGACCACGAGAACTGCAAATATTTTGGGGATTCTCTTTTCAGTTCGTCAGTTGTGCCGCCTCTAACAAGCATAGTTATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet BAH

Protein Analysis

150

Amino Acids

16.49

Weight (kDa)

8.87

Isoelectric Point (pI)

37.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 23
AciI CCGC 1 cut(s) 428
AclWI GGATC 1 cut(s) 334
AfaI GTAC 1 cut(s) 40
AgsI TTSAA 2 cut(s) 121, 131
AluBI AGCT 2 cut(s) 270, 283
AluI AGCT 2 cut(s) 270, 283
Alw26I GTCTC 1 cut(s) 31
AlwI GGATC 1 cut(s) 334
AoxI GGCC 2 cut(s) 11, 316
ApeKI GCWGC 1 cut(s) 283
ArsI GACNNNNNNTTYG 2 cut(s) 221, 253
BauI CACGAG 1 cut(s) 377
BbsI GAAGAC 1 cut(s) 259
BbvI GCAGC 1 cut(s) 270
BccI CCATC 3 cut(s) 71, 293, 364
BcoDI GTCTC 1 cut(s) 31
BglII AGATCT 1 cut(s) 196
BisI GCNGC 2 cut(s) 284, 428
BlsI GCNGC 2 cut(s) 285, 429
BmcAI AGTACT 1 cut(s) 40
BmiI GGNNCC 1 cut(s) 192
BpiI GAAGAC 1 cut(s) 259
BsaBI GATNNNNATC 1 cut(s) 331
BsaI GGTCTC 1 cut(s) 31
Bse8I GATNNNNATC 1 cut(s) 331
BseGI GGATG 2 cut(s) 169, 214
BseJI GATNNNNATC 1 cut(s) 331
BseXI GCAGC 1 cut(s) 270
BseYI CCCAGC 1 cut(s) 222
BshFI GGCC 2 cut(s) 13, 318
BsmAI GTCTC 1 cut(s) 31
BsnI GGCC 2 cut(s) 13, 318
Bso31I GGTCTC 1 cut(s) 31
Bsp143I GATC 3 cut(s) 196, 211, 326
BspACI CCGC 1 cut(s) 428
BspANI GGCC 2 cut(s) 13, 318
BspLI GGNNCC 1 cut(s) 192
BspPI GGATC 1 cut(s) 334
BspTNI GGTCTC 1 cut(s) 31
BssMI GATC 3 cut(s) 196, 211, 326
BssSI CACGAG 1 cut(s) 377
Bst2BI CACGAG 1 cut(s) 377
Bst4CI ACNGT 2 cut(s) 61, 93
Bst6I CTCTTC 1 cut(s) 242
BstF5I GGATG 2 cut(s) 169, 214
BstKTI GATC 3 cut(s) 199, 214, 329
BstMAI GTCTC 1 cut(s) 31
BstMBI GATC 3 cut(s) 196, 211, 326
BstMWI GCNNNNNNNGC 1 cut(s) 315
BstNSI RCATGY 1 cut(s) 85
BstV1I GCAGC 1 cut(s) 270
BstV2I GAAGAC 1 cut(s) 259
BstX2I RGATCY 1 cut(s) 196
BstYI RGATCY 1 cut(s) 196
BsuRI GGCC 2 cut(s) 13, 318
BtsCI GGATG 2 cut(s) 169, 214
BtsIMutI CAGTG 1 cut(s) 109
Csp6I GTAC 1 cut(s) 39
CviAII CATG 4 cut(s) 82, 257, 322, 367
CviJI RGCY 5 cut(s) 13, 226, 270, 283, 318
CviKI_1 RGCY 5 cut(s) 13, 226, 270, 283, 318
CviQI GTAC 1 cut(s) 39
DpnI GATC 3 cut(s) 198, 213, 328
DpnII GATC 3 cut(s) 196, 211, 326
DrdI GACNNNNNNGTC 1 cut(s) 23
DseDI GACNNNNNNGTC 1 cut(s) 23
Eam1104I CTCTTC 1 cut(s) 242
EarI CTCTTC 1 cut(s) 242
Eco31I GGTCTC 1 cut(s) 31
FaeI CATG 4 cut(s) 85, 260, 325, 370
FaiI YATR 7 cut(s) 83, 153, 258, 323, 368, 443, 449
FatI CATG 4 cut(s) 81, 256, 321, 366
Fnu4HI GCNGC 2 cut(s) 284, 428
FokI GGATG 2 cut(s) 176, 221
Fsp4HI GCNGC 2 cut(s) 284, 428
GluI GCNGC 2 cut(s) 284, 428
GsaI CCCAGC 1 cut(s) 226
HaeIII GGCC 2 cut(s) 13, 318
Hin1II CATG 4 cut(s) 85, 260, 325, 370
HincII GTYRAC 1 cut(s) 373
HindII GTYRAC 1 cut(s) 373
HinfI GANTC 2 cut(s) 352, 401
Hpy166II GTNNAC 1 cut(s) 373
Hpy188I TCNGA 1 cut(s) 97
Hpy188III TCNNGA 1 cut(s) 194
Hpy8I GTNNAC 1 cut(s) 373
HpyCH4III ACNGT 2 cut(s) 61, 93
HpyCH4V TGCA 3 cut(s) 205, 286, 387
HpyF10VI GCNNNNNNNGC 1 cut(s) 315
Hsp92II CATG 4 cut(s) 85, 260, 325, 370
Kzo9I GATC 3 cut(s) 196, 211, 326
LpnPI CCDG 5 cut(s) 27, 191, 207, 236, 300
Lsp1109I GCAGC 1 cut(s) 270
MalI GATC 3 cut(s) 198, 213, 328
MboI GATC 3 cut(s) 196, 211, 326
MboII GAAGA 4 cut(s) 133, 259, 264, 354
MflI RGATCY 1 cut(s) 196
MmeI TCCRAC 1 cut(s) 43
MnlI CCTC 5 cut(s) 157, 237, 322, 329, 441
MslI CAYNNNNRTG 2 cut(s) 261, 446
MwoI GCNNNNNNNGC 1 cut(s) 315
NdeII GATC 3 cut(s) 196, 211, 326
NlaIII CATG 4 cut(s) 85, 260, 325, 370
NlaIV GGNNCC 1 cut(s) 192
NspI RCATGY 1 cut(s) 85
PfeI GAWTC 2 cut(s) 352, 401
PkrI GCNGC 2 cut(s) 285, 429
PspFI CCCAGC 1 cut(s) 222
PspN4I GGNNCC 1 cut(s) 192
PsuI RGATCY 1 cut(s) 196
RsaI GTAC 1 cut(s) 40
RsaNI GTAC 1 cut(s) 39
RseI CAYNNNNRTG 2 cut(s) 261, 446
SatI GCNGC 2 cut(s) 284, 428
Sau3AI GATC 3 cut(s) 196, 211, 326
ScaI AGTACT 1 cut(s) 40
SetI ASST 5 cut(s) 21, 192, 272, 285, 314
SmiMI CAYNNNNRTG 2 cut(s) 261, 446
SsiI CCGC 1 cut(s) 428
SspI AATATT 1 cut(s) 392
TaaI ACNGT 2 cut(s) 61, 93
TatI WGTACW 1 cut(s) 38
TauI GCSGC 1 cut(s) 430
TfiI GAWTC 2 cut(s) 352, 401
TscAI CASTG 1 cut(s) 109
TseI GCWGC 1 cut(s) 283
TspDTI ATGAA 3 cut(s) 17, 180, 192
TspRI CASTG 1 cut(s) 109
XceI RCATGY 1 cut(s) 85
ZrmI AGTACT 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.