Agenet domain
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G68580 AT1G68580 AT1G68580 AT1G68580 AT1G68580 |
| fragaria_vesca | FvH4_4g27610 FvH4_4g27610 FvH4_4g27610 FvH4_4g27610 FvH4_4g27610 FvH4_4g27610 FvH4_4g27610 FvH4_4g27610 |
| malus_domestica | MD13G1043500.v1.1 MD16G1044300.v1.1 |
| prunus_persica | Prupe.1G309000_v2.0.a1 Prupe.1G309000_v2.0.a1 Prupe.1G309000_v2.0.a1 |
| pyrus_communis | pycom13g03830 pycom16g03850 |
| rosa_chinensis | RchiOBHm_Chr3g0482621 RchiOBHm_Chr3g0482631 RchiOBHm_Chr3g0482641 RchiOBHm_Chr4g0435461 |
| rosa_laevigata | RLG00000006591 |
| rosa_multiflora | Rmu_sc0006069.1_g000002 Rmu_sc0015893.1_g000006 Rmu_sc0015893.1_g000007 |
| rosa_roxburghii | Rroxscaffold_3G00234330 Rroxscaffold_5G00376690 |
| rosa_rugosa | Rorug04G0285200 |
| rosa_samantha | Rh3AG248900 Rh3CG281900 Rh3CG282000 Rh3CG282100 Rh3DG278100 Rh4AG340900 Rh4BG349200 Rh4CG363700 Rh4DG343400 |
| rosa_wichuraiana | Rw3G022470 Rw4G029730 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 2 cut(s) | 1221, 1491 |
| AciI | CCGC | 4 cut(s) | 73, 617, 854, 1253 |
| AclWI | GGATC | 2 cut(s) | 1629, 1642 |
| AcoI | YGGCCR | 1 cut(s) | 1088 |
| AcsI | RAATTY | 1 cut(s) | 422 |
| AcuI | CTGAAG | 2 cut(s) | 775, 1556 |
| AdeI | CACNNNGTG | 1 cut(s) | 722 |
| AfaI | GTAC | 4 cut(s) | 224, 239, 399, 1188 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 113, 574, 883 |
| AjiI | CACGTC | 1 cut(s) | 1565 |
| AjnI | CCWGG | 2 cut(s) | 876, 1228 |
| AluBI | AGCT | 8 cut(s) | 451, 698, 992, 1001, 1043, 1534, 1578, 1749 |
| AluI | AGCT | 8 cut(s) | 451, 698, 992, 1001, 1043, 1534, 1578, 1749 |
| Alw21I | GWGCWC | 1 cut(s) | 414 |
| Alw26I | GTCTC | 1 cut(s) | 1674 |
| Alw44I | GTGCAC | 1 cut(s) | 410 |
| AlwI | GGATC | 2 cut(s) | 1629, 1642 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1046 |
| AoxI | GGCC | 6 cut(s) | 70, 1076, 1088, 1319, 1332, 1624 |
| ApaLI | GTGCAC | 1 cut(s) | 410 |
| ApeKI | GCWGC | 4 cut(s) | 661, 725, 989, 1040 |
| ApoI | RAATTY | 1 cut(s) | 422 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 170, 202 |
| AspLEI | GCGC | 1 cut(s) | 1735 |
| AspS9I | GGNCC | 2 cut(s) | 70, 886 |
| AsuHPI | GGTGA | 3 cut(s) | 347, 850, 1274 |
| AvaII | GGWCC | 1 cut(s) | 886 |
| BaeGI | GKGCMC | 1 cut(s) | 414 |
| BamHI | GGATCC | 1 cut(s) | 1634 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1170, 1202 |
| BauI | CACGAG | 2 cut(s) | 1673, 1685 |
| BbsI | GAAGAC | 2 cut(s) | 1539, 1567 |
| Bbv12I | GWGCWC | 1 cut(s) | 414 |
| BbvI | GCAGC | 4 cut(s) | 673, 737, 1001, 1052 |
| BccI | CCATC | 8 cut(s) | 2, 61, 256, 377, 1160, 1379, 1601, 1672 |
| BceAI | ACGGC | 1 cut(s) | 135 |
| BciT130I | CCWGG | 2 cut(s) | 878, 1230 |
| BclI | TGATCA | 1 cut(s) | 1048 |
| BcoDI | GTCTC | 1 cut(s) | 1674 |
| BfaI | CTAG | 1 cut(s) | 863 |
| BfmI | CTRYAG | 1 cut(s) | 81 |
| BglII | AGATCT | 1 cut(s) | 1504 |
| BisI | GCNGC | 6 cut(s) | 73, 662, 726, 854, 990, 1041 |
| BlsI | GCNGC | 6 cut(s) | 74, 663, 727, 855, 991, 1042 |
| BmcAI | AGTACT | 1 cut(s) | 1188 |
| Bme1390I | CCNGG | 2 cut(s) | 878, 1230 |
| Bme18I | GGWCC | 1 cut(s) | 886 |
| BmgBI | CACGTC | 1 cut(s) | 1565 |
| BmgT120I | GGNCC | 2 cut(s) | 70, 886 |
| BmiI | GGNNCC | 4 cut(s) | 456, 579, 874, 1636 |
| BmrFI | CCNGG | 2 cut(s) | 878, 1230 |
| BmrI | ACTGGG | 1 cut(s) | 728 |
| BmsI | GCATC | 2 cut(s) | 7, 976 |
| BmuI | ACTGGG | 1 cut(s) | 728 |
| BpiI | GAAGAC | 2 cut(s) | 1539, 1567 |
| BpmI | CTGGAG | 1 cut(s) | 1177 |
| BpuEI | CTTGAG | 3 cut(s) | 498, 1031, 1263 |
| BsaAI | YACGTR | 1 cut(s) | 1219 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1639 |
| BsaJI | CCNNGG | 3 cut(s) | 796, 876, 1228 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 150, 180 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 113, 574, 883 |
| Bse1I | ACTGG | 2 cut(s) | 636, 723 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1639 |
| BseBI | CCWGG | 2 cut(s) | 878, 1230 |
| BseDI | CCNNGG | 3 cut(s) | 796, 876, 1228 |
| BseGI | GGATG | 4 cut(s) | 13, 991, 1477, 1522 |
| BseJI | GATNNNNATC | 1 cut(s) | 1639 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 113, 574, 883 |
| BseMII | CTCAG | 2 cut(s) | 379, 415 |
| BseNI | ACTGG | 2 cut(s) | 636, 723 |
| BseRI | GAGGAG | 1 cut(s) | 215 |
| BseSI | GKGCMC | 1 cut(s) | 414 |
| BseXI | GCAGC | 4 cut(s) | 673, 737, 1001, 1052 |
| BseYI | CCCAGC | 1 cut(s) | 1288 |
| BsgI | GTGCAG | 1 cut(s) | 744 |
| BshFI | GGCC | 6 cut(s) | 72, 1078, 1090, 1321, 1334, 1626 |
| BsiHKAI | GWGCWC | 1 cut(s) | 414 |
| BslFI | GGGAC | 3 cut(s) | 775, 877, 1071 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 113, 574, 883 |
| BsmAI | GTCTC | 1 cut(s) | 1674 |
| BsmBI | CGTCTC | 1 cut(s) | 1674 |
| BsmFI | GGGAC | 3 cut(s) | 775, 877, 1071 |
| BsmI | GAATGC | 1 cut(s) | 380 |
| BsnI | GGCC | 6 cut(s) | 72, 1078, 1090, 1321, 1334, 1626 |
| Bsp1286I | GDGCHC | 1 cut(s) | 414 |
| Bsp143I | GATC | 4 cut(s) | 1048, 1504, 1519, 1634 |
| BspACI | CCGC | 4 cut(s) | 73, 617, 854, 1253 |
| BspANI | GGCC | 6 cut(s) | 72, 1078, 1090, 1321, 1334, 1626 |
| BspCNI | CTCAG | 2 cut(s) | 378, 414 |
| BspHI | TCATGA | 1 cut(s) | 175 |
| BspLI | GGNNCC | 4 cut(s) | 456, 579, 874, 1636 |
| BspPI | GGATC | 2 cut(s) | 1629, 1642 |
| BsrI | ACTGG | 2 cut(s) | 636, 723 |
| BssECI | CCNNGG | 3 cut(s) | 796, 876, 1228 |
| BssMI | GATC | 4 cut(s) | 1048, 1504, 1519, 1634 |
| BssNAI | GTATAC | 1 cut(s) | 1222 |
| BssSI | CACGAG | 2 cut(s) | 1673, 1685 |
| BssT1I | CCWWGG | 1 cut(s) | 796 |
| Bst1107I | GTATAC | 1 cut(s) | 1222 |
| Bst2BI | CACGAG | 2 cut(s) | 1673, 1685 |
| Bst2UI | CCWGG | 2 cut(s) | 878, 1230 |
| Bst4CI | ACNGT | 4 cut(s) | 397, 477, 562, 1369 |
| Bst6I | CTCTTC | 1 cut(s) | 1550 |
| BstBAI | YACGTR | 1 cut(s) | 1219 |
| BstC8I | GCNNGC | 2 cut(s) | 22, 742 |
| BstDEI | CTNAG | 7 cut(s) | 226, 249, 365, 401, 545, 1359, 1750 |
| BstF5I | GGATG | 4 cut(s) | 13, 991, 1477, 1522 |
| BstHHI | GCGC | 1 cut(s) | 1735 |
| BstKTI | GATC | 4 cut(s) | 1051, 1507, 1522, 1637 |
| BstMAI | GTCTC | 1 cut(s) | 1674 |
| BstMBI | GATC | 4 cut(s) | 1048, 1504, 1519, 1634 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 448, 998, 1623 |
| BstNI | CCWGG | 2 cut(s) | 878, 1230 |
| BstNSI | RCATGY | 4 cut(s) | 556, 692, 732, 1393 |
| BstSCI | CCNGG | 2 cut(s) | 876, 1228 |
| BstSFI | CTRYAG | 1 cut(s) | 81 |
| BstSLI | GKGCMC | 1 cut(s) | 414 |
| BstV1I | GCAGC | 4 cut(s) | 673, 737, 1001, 1052 |
| BstV2I | GAAGAC | 2 cut(s) | 1539, 1567 |
| BstX2I | RGATCY | 2 cut(s) | 1504, 1634 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 902 |
| BstYI | RGATCY | 2 cut(s) | 1504, 1634 |
| BstZ17I | GTATAC | 1 cut(s) | 1222 |
| BsuRI | GGCC | 6 cut(s) | 72, 1078, 1090, 1321, 1334, 1626 |
| BtrI | CACGTC | 1 cut(s) | 1565 |
| BtsCI | GGATG | 4 cut(s) | 13, 991, 1477, 1522 |
| BtsIMutI | CAGTG | 2 cut(s) | 643, 716 |
| Cac8I | GCNNGC | 2 cut(s) | 22, 742 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1046 |
| CciI | TCATGA | 1 cut(s) | 175 |
| CfoI | GCGC | 1 cut(s) | 1735 |
| Cfr13I | GGNCC | 2 cut(s) | 70, 886 |
| CseI | GACGC | 2 cut(s) | 200, 1017 |
| Csp6I | GTAC | 4 cut(s) | 223, 238, 398, 1187 |
| CviQI | GTAC | 4 cut(s) | 223, 238, 398, 1187 |
| DdeI | CTNAG | 7 cut(s) | 226, 249, 365, 401, 545, 1359, 1750 |
| DpnI | GATC | 4 cut(s) | 1050, 1506, 1521, 1636 |
| DpnII | GATC | 4 cut(s) | 1048, 1504, 1519, 1634 |
| DraI | TTTAAA | 2 cut(s) | 111, 672 |
| DraIII | CACNNNGTG | 1 cut(s) | 722 |
| EaeI | YGGCCR | 1 cut(s) | 1088 |
| Eam1104I | CTCTTC | 1 cut(s) | 1550 |
| EarI | CTCTTC | 1 cut(s) | 1550 |
| Eco130I | CCWWGG | 1 cut(s) | 796 |
| Eco32I | GATATC | 1 cut(s) | 643 |
| Eco47I | GGWCC | 1 cut(s) | 886 |
| Eco57I | CTGAAG | 2 cut(s) | 775, 1556 |
| EcoO109I | RGGNCCY | 1 cut(s) | 886 |
| EcoRII | CCWGG | 2 cut(s) | 876, 1228 |
| EcoRV | GATATC | 1 cut(s) | 643 |
| EcoT14I | CCWWGG | 1 cut(s) | 796 |
| EcoT22I | ATGCAT | 2 cut(s) | 380, 690 |
| ErhI | CCWWGG | 1 cut(s) | 796 |
| Esp3I | CGTCTC | 1 cut(s) | 1674 |
| FaqI | GGGAC | 3 cut(s) | 775, 877, 1071 |
| FauI | CCCGC | 1 cut(s) | 1246 |
| FbaI | TGATCA | 1 cut(s) | 1048 |
| FblI | GTMKAC | 2 cut(s) | 1221, 1491 |
| Fnu4HI | GCNGC | 6 cut(s) | 73, 662, 726, 854, 990, 1041 |
| FokI | GGATG | 4 cut(s) | 20, 998, 1484, 1529 |
| Fsp4HI | GCNGC | 6 cut(s) | 73, 662, 726, 854, 990, 1041 |
| FspBI | CTAG | 1 cut(s) | 863 |
| GlaI | GCGC | 1 cut(s) | 1734 |
| GluI | GCNGC | 6 cut(s) | 73, 662, 726, 854, 990, 1041 |
| GsaI | CCCAGC | 1 cut(s) | 1292 |
| GsuI | CTGGAG | 1 cut(s) | 1177 |
| HaeIII | GGCC | 6 cut(s) | 72, 1078, 1090, 1321, 1334, 1626 |
| HgaI | GACGC | 2 cut(s) | 200, 1017 |
| HhaI | GCGC | 1 cut(s) | 1735 |
| Hin6I | GCGC | 1 cut(s) | 1733 |
| HinP1I | GCGC | 1 cut(s) | 1733 |
| HincII | GTYRAC | 2 cut(s) | 1492, 1681 |
| HindII | GTYRAC | 2 cut(s) | 1492, 1681 |
| HindIII | AAGCTT | 1 cut(s) | 1747 |
| HinfI | GANTC | 4 cut(s) | 245, 1237, 1660, 1709 |
| HphI | GGTGA | 3 cut(s) | 347, 850, 1274 |
| Hpy166II | GTNNAC | 4 cut(s) | 412, 1222, 1492, 1681 |
| Hpy188I | TCNGA | 6 cut(s) | 429, 647, 1048, 1072, 1405, 1459 |
| Hpy188III | TCNNGA | 8 cut(s) | 176, 833, 940, 974, 983, 1156, 1280, 1502 |
| Hpy8I | GTNNAC | 4 cut(s) | 412, 1222, 1492, 1681 |
| HpyCH4III | ACNGT | 4 cut(s) | 397, 477, 562, 1369 |
| HpyCH4IV | ACGT | 2 cut(s) | 1218, 1564 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 448, 998, 1623 |
| HpyF3I | CTNAG | 7 cut(s) | 226, 249, 365, 401, 545, 1359, 1750 |
| HpySE526I | ACGT | 2 cut(s) | 1218, 1564 |
| HspAI | GCGC | 1 cut(s) | 1733 |
| Ksp22I | TGATCA | 1 cut(s) | 1048 |
| Kzo9I | GATC | 4 cut(s) | 1048, 1504, 1519, 1634 |
| Lsp1109I | GCAGC | 4 cut(s) | 673, 737, 1001, 1052 |
| LweI | GCATC | 2 cut(s) | 7, 976 |
| MaeI | CTAG | 1 cut(s) | 863 |
| MaeII | ACGT | 2 cut(s) | 1218, 1564 |
| MaeIII | GTNAC | 5 cut(s) | 49, 254, 353, 562, 714 |
| MalI | GATC | 4 cut(s) | 1050, 1506, 1521, 1636 |
| MboI | GATC | 4 cut(s) | 1048, 1504, 1519, 1634 |
| MboII | GAAGA | 7 cut(s) | 76, 242, 632, 1441, 1539, 1567, 1572 |
| MfeI | CAATTG | 1 cut(s) | 1052 |
| MflI | RGATCY | 2 cut(s) | 1504, 1634 |
| MhlI | GDGCHC | 1 cut(s) | 414 |
| MluCI | AATT | 4 cut(s) | 319, 422, 1052, 1348 |
| MlyI | GAGTC | 1 cut(s) | 239 |
| MmeI | TCCRAC | 1 cut(s) | 1351 |
| Mph1103I | ATGCAT | 2 cut(s) | 380, 690 |
| MseI | TTAA | 4 cut(s) | 110, 324, 671, 960 |
| MslI | CAYNNNNRTG | 1 cut(s) | 636 |
| MspA1I | CMGCKG | 3 cut(s) | 451, 992, 1534 |
| MspR9I | CCNGG | 2 cut(s) | 878, 1230 |
| MunI | CAATTG | 1 cut(s) | 1052 |
| Mva1269I | GAATGC | 1 cut(s) | 380 |
| MvaI | CCWGG | 2 cut(s) | 878, 1230 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 448, 998, 1623 |
| NdeII | GATC | 4 cut(s) | 1048, 1504, 1519, 1634 |
| NlaIV | GGNNCC | 4 cut(s) | 456, 579, 874, 1636 |
| NmuCI | GTSAC | 2 cut(s) | 353, 714 |
| NsiI | ATGCAT | 2 cut(s) | 380, 690 |
| NspI | RCATGY | 4 cut(s) | 556, 692, 732, 1393 |
| PagI | TCATGA | 1 cut(s) | 175 |
| PctI | GAATGC | 1 cut(s) | 380 |
| PfeI | GAWTC | 3 cut(s) | 1237, 1660, 1709 |
| PkrI | GCNGC | 6 cut(s) | 74, 663, 727, 855, 991, 1042 |
| PleI | GAGTC | 1 cut(s) | 239 |
| PpsI | GAGTC | 1 cut(s) | 239 |
| Ppu21I | YACGTR | 1 cut(s) | 1219 |
| PpuMI | RGGWCCY | 1 cut(s) | 886 |
| Psp5II | RGGWCCY | 1 cut(s) | 886 |
| Psp6I | CCWGG | 2 cut(s) | 876, 1228 |
| PspFI | CCCAGC | 1 cut(s) | 1288 |
| PspGI | CCWGG | 2 cut(s) | 876, 1228 |
| PspN4I | GGNNCC | 4 cut(s) | 456, 579, 874, 1636 |
| PspPI | GGNCC | 2 cut(s) | 70, 886 |
| PspPPI | RGGWCCY | 1 cut(s) | 886 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 793, 825 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1046 |
| PsuI | RGATCY | 2 cut(s) | 1504, 1634 |
| PvuII | CAGCTG | 3 cut(s) | 451, 992, 1534 |
| RsaI | GTAC | 4 cut(s) | 224, 239, 399, 1188 |
| RsaNI | GTAC | 4 cut(s) | 223, 238, 398, 1187 |
| RseI | CAYNNNNRTG | 1 cut(s) | 636 |
| SalI | GTCGAC | 1 cut(s) | 1490 |
| SaqAI | TTAA | 4 cut(s) | 110, 324, 671, 960 |
| SatI | GCNGC | 6 cut(s) | 73, 662, 726, 854, 990, 1041 |
| Sau3AI | GATC | 4 cut(s) | 1048, 1504, 1519, 1634 |
| Sau96I | GGNCC | 2 cut(s) | 70, 886 |
| ScaI | AGTACT | 1 cut(s) | 1188 |
| SchI | GAGTC | 1 cut(s) | 239 |
| ScrFI | CCNGG | 2 cut(s) | 878, 1230 |
| SduI | GDGCHC | 1 cut(s) | 414 |
| SfaNI | GCATC | 2 cut(s) | 7, 976 |
| SfcI | CTRYAG | 1 cut(s) | 81 |
| SinI | GGWCC | 1 cut(s) | 886 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 636 |
| SmlI | CTYRAG | 3 cut(s) | 513, 1010, 1278 |
| SmoI | CTYRAG | 3 cut(s) | 513, 1010, 1278 |
| Sse9I | AATT | 4 cut(s) | 319, 422, 1052, 1348 |
| SsiI | CCGC | 4 cut(s) | 73, 617, 854, 1253 |
| SspI | AATATT | 1 cut(s) | 1700 |
| SspMI | CTAG | 1 cut(s) | 863 |
| StyD4I | CCNGG | 2 cut(s) | 876, 1228 |
| StyI | CCWWGG | 1 cut(s) | 796 |
| TaaI | ACNGT | 4 cut(s) | 397, 477, 562, 1369 |
| TaiI | ACGT | 2 cut(s) | 1221, 1567 |
| TaqI | TCGA | 3 cut(s) | 504, 1491, 1550 |
| TasI | AATT | 4 cut(s) | 319, 422, 1052, 1348 |
| TatI | WGTACW | 2 cut(s) | 397, 1186 |
| TauI | GCSGC | 2 cut(s) | 75, 856 |
| TfiI | GAWTC | 3 cut(s) | 1237, 1660, 1709 |
| Tru1I | TTAA | 4 cut(s) | 110, 324, 671, 960 |
| Tru9I | TTAA | 4 cut(s) | 110, 324, 671, 960 |
| TscAI | CASTG | 2 cut(s) | 643, 723 |
| TseFI | GTSAC | 2 cut(s) | 353, 714 |
| TseI | GCWGC | 4 cut(s) | 661, 725, 989, 1040 |
| Tsp45I | GTSAC | 2 cut(s) | 353, 714 |
| TspDTI | ATGAA | 7 cut(s) | 164, 1011, 1110, 1452, 1488, 1500, 1713 |
| TspGWI | ACGGA | 2 cut(s) | 76, 142 |
| TspRI | CASTG | 2 cut(s) | 643, 723 |
| VneI | GTGCAC | 1 cut(s) | 410 |
| VpaK11BI | GGWCC | 1 cut(s) | 886 |
| XapI | RAATTY | 1 cut(s) | 422 |
| XceI | RCATGY | 4 cut(s) | 556, 692, 732, 1393 |
| XmiI | GTMKAC | 2 cut(s) | 1221, 1491 |
| XspI | CTAG | 1 cut(s) | 863 |
| ZrmI | AGTACT | 1 cut(s) | 1188 |
| Zsp2I | ATGCAT | 2 cut(s) | 380, 690 |