Rw4G029730

Agenet domain

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Forward (+)
56454611 .. 56459016
4406 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G029730.1

Sequence Viewer

Length: 1761 bp
ATGTTGGATGGTAAAGATGCTGGCGAGGTGGATATTGAACTTTTGAAGGTTACTCACTTACGGAAGATGGGCCGCTATACTACAGAGTTTATGTGGTTGGGTTCTCCTTTAAAGGGAAGGAAAAAACGGAGGCATTACCAATCGTTCAGCCGTAATGGAGTCATAGTTTCTGTTCATGACTTTGTATTTGTTTTAGCAGAGGAGGATAAGCGTCTTGTTGCGTACTTAGAAGATATGTACGAGGACTCTAAGGGTAACAAGATGGTTGTTGTTCGCTGGTTTCACAAAGTTGATGAGGTTGGTATGGTCTTGCCTCTCAATTTTAATGACAGAGAGATTTTCTTTTCCCTCTGTCACCAACATCTCAGTATTGAATGCATTGATGGATTGGCTACTGTCCTCAGCCCTGTGCACTTTGAGAAATTTCTGAAAGAGGCGAAGCAAACACAGCTGGAACCCTTTGTATGTCATAAACAGTTTGAAAATGATGATGTAAAGCCCTTCGACATTACTCAAGTTGAAGGTTATTGGAAACAGGAGATACTTAGATACATGCACACAGTTACCCCTTCAAAGGTTCCTGTCAGTTCTCAACAATCTGTTGATGAGTTGAAAGCGGAAGAAGTTGCTCATGCCAGTGATATCAGACCTAAAAAGAGGCAGCGTTCTTTAAAAGATGATGATATGCATGTTGAAGGTATTGAAAGAAGGGTGTCACTGGGTGCAGCATGTGGGGAAGCAGGCTATATAAGTGAAAATGGGACTGATTGTAAAAGTAAAAGTGAAGCCTTCACCCTTGGTAAGAGAGGTTCTGCTGTTATTTTACCTTGTCCAGAGGTGAAACAAATCCTGCCGCAGTATCTAGCAGTAGGTTCCCAGGTTGAGGTCCTGTCCCAAGATAGTGGCATTAGAGGGTGTTGGTTTAGAGCATTGATTATCAAGAAGCATAAAGATAAAGTTAAGGTGCAATATCAAGATATTCAGGATGCAGCTGATGAAGCTAACAAACTTGAGGAATGGATTTTAGCGTCAAAGATTGCAGCTCCTGATCAATTGGGGCTTCGGCTTTCTGATAGGCCAAGTATTCGGCCATGTATAAAGTCAAATAAAGGTAGAGTTTCATGGTCTGTTGGTGTTGCGAGTGTTGTTGATGTCTGGAGGCATGATGGTTGGTGGGAAGGCATAGTACTTCAGAAGGAATGTGATGACAGACTTCACGTATACTTCCCAGGAGAGAATCAGGTTTTGATTGCGGGGCGTAGTGAAGTGCGACATTCTCAAGAGTGGCTGGGGAGAGAGTGGGCTTATATAAAGGACAGGCCAGACCTTGTGGCCTCAATATCAAGTAATTTAGAAACTAAGAAAACTGTTGGAAACTCATTTGATGGCATGTCAGGGCTGTCTGAAATCATTGATAGCAGAGAGTTGAAGAAACATGAAACATCTGCTCTTTCCTCTGATAATGACAAGGATGAAAAAGTAAATGAAGTCGACAAAGTTCCAGATCTTTTGAAGGATGATCTCTTTGCCCAGCTGAAGTGGAAGTCTTCGAGGAAGAGAAGACGTGGTAATGGAAGCTCTGCCCAAAAGTTGCATTTTGGTAGTGATGGTAAAAGCACCTCTGGCCTCATGGGATCCAAATCTTGTGAAAGATATTTGATTCCATCGTCTCTCATGGTTGACCACGAGAACTGCAAATATTTAGGGGATTCTCTTTTCAGTTCATCAGTTGCGCCTTCTCTAACAAGCTTAGTTATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

586

Amino Acids

66.37

Weight (kDa)

6.82

Isoelectric Point (pI)

49.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BAH PF01426 56 - 164 4.3e-10 BAH domain
Agenet PF05641 291 - 365 5.5e-18 Agenet domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 1221, 1491
AciI CCGC 4 cut(s) 73, 617, 854, 1253
AclWI GGATC 2 cut(s) 1629, 1642
AcoI YGGCCR 1 cut(s) 1088
AcsI RAATTY 1 cut(s) 422
AcuI CTGAAG 2 cut(s) 1175, 1556
AdeI CACNNNGTG 1 cut(s) 722
AfaI GTAC 3 cut(s) 224, 239, 1188
AfiI CCNNNNNNNGG 3 cut(s) 113, 574, 883
AjiI CACGTC 1 cut(s) 1565
AjnI CCWGG 2 cut(s) 876, 1228
AluBI AGCT 7 cut(s) 451, 992, 1001, 1043, 1534, 1578, 1749
AluI AGCT 7 cut(s) 451, 992, 1001, 1043, 1534, 1578, 1749
Alw21I GWGCWC 1 cut(s) 414
Alw26I GTCTC 1 cut(s) 1674
Alw44I GTGCAC 1 cut(s) 410
AlwI GGATC 2 cut(s) 1629, 1642
AlwNI CAGNNNCTG 1 cut(s) 1046
AoxI GGCC 6 cut(s) 70, 1076, 1088, 1319, 1332, 1624
ApaLI GTGCAC 1 cut(s) 410
ApeKI GCWGC 4 cut(s) 661, 725, 989, 1040
ApoI RAATTY 1 cut(s) 422
ArsI GACNNNNNNTTYG 2 cut(s) 170, 202
AspLEI GCGC 1 cut(s) 1735
AspS9I GGNCC 2 cut(s) 70, 886
AsuHPI GGTGA 3 cut(s) 347, 784, 850
AvaII GGWCC 1 cut(s) 886
BaeGI GKGCMC 1 cut(s) 414
BamHI GGATCC 1 cut(s) 1634
BarI GAAGNNNNNNTAC 2 cut(s) 1170, 1202
BauI CACGAG 1 cut(s) 1685
BbsI GAAGAC 2 cut(s) 1539, 1567
Bbv12I GWGCWC 1 cut(s) 414
BbvCI CCTCAGC 1 cut(s) 401
BbvI GCAGC 4 cut(s) 673, 737, 1001, 1052
BccI CCATC 8 cut(s) 2, 61, 256, 377, 1160, 1379, 1601, 1672
BceAI ACGGC 1 cut(s) 135
BciT130I CCWGG 2 cut(s) 878, 1230
BclI TGATCA 1 cut(s) 1048
BcoDI GTCTC 1 cut(s) 1674
BfaI CTAG 1 cut(s) 863
BfmI CTRYAG 1 cut(s) 81
BglII AGATCT 1 cut(s) 1504
BisI GCNGC 6 cut(s) 73, 662, 726, 854, 990, 1041
BlsI GCNGC 6 cut(s) 74, 663, 727, 855, 991, 1042
BmcAI AGTACT 1 cut(s) 1188
Bme1390I CCNGG 2 cut(s) 878, 1230
Bme18I GGWCC 1 cut(s) 886
BmgBI CACGTC 1 cut(s) 1565
BmgT120I GGNCC 2 cut(s) 70, 886
BmiI GGNNCC 4 cut(s) 456, 579, 874, 1636
BmrFI CCNGG 2 cut(s) 878, 1230
BmrI ACTGGG 1 cut(s) 728
BmsI GCATC 2 cut(s) 7, 976
BmuI ACTGGG 1 cut(s) 728
BpiI GAAGAC 2 cut(s) 1539, 1567
BpmI CTGGAG 1 cut(s) 1177
Bpu10I CCTNAGC 1 cut(s) 401
BpuEI CTTGAG 3 cut(s) 498, 1031, 1263
BsaAI YACGTR 1 cut(s) 1219
BsaBI GATNNNNATC 1 cut(s) 1639
BsaJI CCNNGG 3 cut(s) 796, 876, 1228
BsaXI ACNNNNNCTCC 2 cut(s) 150, 180
Bsc4I CCNNNNNNNGG 3 cut(s) 113, 574, 883
Bse1I ACTGG 2 cut(s) 636, 723
Bse8I GATNNNNATC 1 cut(s) 1639
BseBI CCWGG 2 cut(s) 878, 1230
BseDI CCNNGG 3 cut(s) 796, 876, 1228
BseGI GGATG 4 cut(s) 13, 991, 1477, 1522
BseJI GATNNNNATC 1 cut(s) 1639
BseLI CCNNNNNNNGG 3 cut(s) 113, 574, 883
BseMII CTCAG 2 cut(s) 379, 415
BseNI ACTGG 2 cut(s) 636, 723
BseRI GAGGAG 1 cut(s) 215
BseSI GKGCMC 1 cut(s) 414
BseXI GCAGC 4 cut(s) 673, 737, 1001, 1052
BseYI CCCAGC 2 cut(s) 1288, 1530
BsgI GTGCAG 1 cut(s) 744
BshFI GGCC 6 cut(s) 72, 1078, 1090, 1321, 1334, 1626
BsiHKAI GWGCWC 1 cut(s) 414
BslFI GGGAC 2 cut(s) 775, 877
BslI CCNNNNNNNGG 3 cut(s) 113, 574, 883
BsmAI GTCTC 1 cut(s) 1674
BsmBI CGTCTC 1 cut(s) 1674
BsmFI GGGAC 2 cut(s) 775, 877
BsmI GAATGC 1 cut(s) 380
BsnI GGCC 6 cut(s) 72, 1078, 1090, 1321, 1334, 1626
Bsp1286I GDGCHC 1 cut(s) 414
Bsp143I GATC 4 cut(s) 1048, 1504, 1519, 1634
BspACI CCGC 4 cut(s) 73, 617, 854, 1253
BspANI GGCC 6 cut(s) 72, 1078, 1090, 1321, 1334, 1626
BspCNI CTCAG 2 cut(s) 378, 414
BspHI TCATGA 1 cut(s) 175
BspLI GGNNCC 4 cut(s) 456, 579, 874, 1636
BspPI GGATC 2 cut(s) 1629, 1642
BsrI ACTGG 2 cut(s) 636, 723
BssECI CCNNGG 3 cut(s) 796, 876, 1228
BssMI GATC 4 cut(s) 1048, 1504, 1519, 1634
BssNAI GTATAC 1 cut(s) 1222
BssSI CACGAG 1 cut(s) 1685
BssT1I CCWWGG 1 cut(s) 796
Bst1107I GTATAC 1 cut(s) 1222
Bst2BI CACGAG 1 cut(s) 1685
Bst2UI CCWGG 2 cut(s) 878, 1230
Bst4CI ACNGT 4 cut(s) 397, 477, 562, 1369
Bst6I CTCTTC 1 cut(s) 1550
BstBAI YACGTR 1 cut(s) 1219
BstC8I GCNNGC 2 cut(s) 22, 742
BstDEI CTNAG 7 cut(s) 226, 249, 365, 401, 545, 1359, 1750
BstF5I GGATG 4 cut(s) 13, 991, 1477, 1522
BstHHI GCGC 1 cut(s) 1735
BstKTI GATC 4 cut(s) 1051, 1507, 1522, 1637
BstMAI GTCTC 1 cut(s) 1674
BstMBI GATC 4 cut(s) 1048, 1504, 1519, 1634
BstMWI GCNNNNNNNGC 3 cut(s) 448, 998, 1623
BstNI CCWGG 2 cut(s) 878, 1230
BstNSI RCATGY 4 cut(s) 556, 692, 732, 1393
BstSCI CCNGG 2 cut(s) 876, 1228
BstSFI CTRYAG 1 cut(s) 81
BstSLI GKGCMC 1 cut(s) 414
BstV1I GCAGC 4 cut(s) 673, 737, 1001, 1052
BstV2I GAAGAC 2 cut(s) 1539, 1567
BstX2I RGATCY 2 cut(s) 1504, 1634
BstXI CCANNNNNNTGG 1 cut(s) 902
BstYI RGATCY 2 cut(s) 1504, 1634
BstZ17I GTATAC 1 cut(s) 1222
BsuRI GGCC 6 cut(s) 72, 1078, 1090, 1321, 1334, 1626
BtrI CACGTC 1 cut(s) 1565
BtsCI GGATG 4 cut(s) 13, 991, 1477, 1522
BtsIMutI CAGTG 2 cut(s) 643, 716
Cac8I GCNNGC 2 cut(s) 22, 742
CaiI CAGNNNCTG 1 cut(s) 1046
CciI TCATGA 1 cut(s) 175
CfoI GCGC 1 cut(s) 1735
Cfr13I GGNCC 2 cut(s) 70, 886
CseI GACGC 2 cut(s) 200, 1017
Csp6I GTAC 3 cut(s) 223, 238, 1187
CviQI GTAC 3 cut(s) 223, 238, 1187
DdeI CTNAG 7 cut(s) 226, 249, 365, 401, 545, 1359, 1750
DpnI GATC 4 cut(s) 1050, 1506, 1521, 1636
DpnII GATC 4 cut(s) 1048, 1504, 1519, 1634
DraI TTTAAA 2 cut(s) 111, 672
DraIII CACNNNGTG 1 cut(s) 722
EaeI YGGCCR 1 cut(s) 1088
Eam1104I CTCTTC 1 cut(s) 1550
EarI CTCTTC 1 cut(s) 1550
Eco130I CCWWGG 1 cut(s) 796
Eco32I GATATC 1 cut(s) 643
Eco47I GGWCC 1 cut(s) 886
Eco57I CTGAAG 2 cut(s) 1175, 1556
EcoO109I RGGNCCY 1 cut(s) 886
EcoRII CCWGG 2 cut(s) 876, 1228
EcoRV GATATC 1 cut(s) 643
EcoT14I CCWWGG 1 cut(s) 796
EcoT22I ATGCAT 2 cut(s) 380, 690
ErhI CCWWGG 1 cut(s) 796
Esp3I CGTCTC 1 cut(s) 1674
FaqI GGGAC 2 cut(s) 775, 877
FauI CCCGC 1 cut(s) 1246
FbaI TGATCA 1 cut(s) 1048
FblI GTMKAC 2 cut(s) 1221, 1491
Fnu4HI GCNGC 6 cut(s) 73, 662, 726, 854, 990, 1041
FokI GGATG 4 cut(s) 20, 998, 1484, 1529
Fsp4HI GCNGC 6 cut(s) 73, 662, 726, 854, 990, 1041
FspBI CTAG 1 cut(s) 863
GlaI GCGC 1 cut(s) 1734
GluI GCNGC 6 cut(s) 73, 662, 726, 854, 990, 1041
GsaI CCCAGC 2 cut(s) 1292, 1534
GsuI CTGGAG 1 cut(s) 1177
HaeIII GGCC 6 cut(s) 72, 1078, 1090, 1321, 1334, 1626
HgaI GACGC 2 cut(s) 200, 1017
HhaI GCGC 1 cut(s) 1735
Hin6I GCGC 1 cut(s) 1733
HinP1I GCGC 1 cut(s) 1733
HincII GTYRAC 2 cut(s) 1492, 1681
HindII GTYRAC 2 cut(s) 1492, 1681
HindIII AAGCTT 1 cut(s) 1747
HinfI GANTC 5 cut(s) 159, 245, 1237, 1660, 1709
HphI GGTGA 3 cut(s) 347, 784, 850
Hpy166II GTNNAC 4 cut(s) 412, 1222, 1492, 1681
Hpy188I TCNGA 6 cut(s) 429, 647, 1072, 1194, 1405, 1459
Hpy188III TCNNGA 9 cut(s) 176, 833, 940, 974, 983, 1046, 1156, 1280, 1502
Hpy8I GTNNAC 4 cut(s) 412, 1222, 1492, 1681
HpyCH4III ACNGT 4 cut(s) 397, 477, 562, 1369
HpyCH4IV ACGT 2 cut(s) 1218, 1564
HpyF10VI GCNNNNNNNGC 3 cut(s) 448, 998, 1623
HpyF3I CTNAG 7 cut(s) 226, 249, 365, 401, 545, 1359, 1750
HpySE526I ACGT 2 cut(s) 1218, 1564
HspAI GCGC 1 cut(s) 1733
Ksp22I TGATCA 1 cut(s) 1048
Kzo9I GATC 4 cut(s) 1048, 1504, 1519, 1634
LmnI GCTCC 1 cut(s) 1048
Lsp1109I GCAGC 4 cut(s) 673, 737, 1001, 1052
LweI GCATC 2 cut(s) 7, 976
MaeI CTAG 1 cut(s) 863
MaeII ACGT 2 cut(s) 1218, 1564
MaeIII GTNAC 5 cut(s) 49, 254, 353, 562, 714
MalI GATC 4 cut(s) 1050, 1506, 1521, 1636
MboI GATC 4 cut(s) 1048, 1504, 1519, 1634
MboII GAAGA 7 cut(s) 76, 242, 632, 1441, 1539, 1567, 1572
MfeI CAATTG 1 cut(s) 1052
MflI RGATCY 2 cut(s) 1504, 1634
MhlI GDGCHC 1 cut(s) 414
MluCI AATT 4 cut(s) 319, 422, 1052, 1348
MlyI GAGTC 2 cut(s) 168, 239
MmeI TCCRAC 1 cut(s) 1351
Mph1103I ATGCAT 2 cut(s) 380, 690
MseI TTAA 4 cut(s) 110, 324, 671, 960
MslI CAYNNNNRTG 1 cut(s) 636
MspA1I CMGCKG 3 cut(s) 451, 992, 1534
MspR9I CCNGG 2 cut(s) 878, 1230
MunI CAATTG 1 cut(s) 1052
Mva1269I GAATGC 1 cut(s) 380
MvaI CCWGG 2 cut(s) 878, 1230
MwoI GCNNNNNNNGC 3 cut(s) 448, 998, 1623
NdeII GATC 4 cut(s) 1048, 1504, 1519, 1634
NlaIV GGNNCC 4 cut(s) 456, 579, 874, 1636
NmuCI GTSAC 2 cut(s) 353, 714
NsiI ATGCAT 2 cut(s) 380, 690
NspI RCATGY 4 cut(s) 556, 692, 732, 1393
PagI TCATGA 1 cut(s) 175
PctI GAATGC 1 cut(s) 380
PfeI GAWTC 3 cut(s) 1237, 1660, 1709
PkrI GCNGC 6 cut(s) 74, 663, 727, 855, 991, 1042
PleI GAGTC 2 cut(s) 167, 239
PpsI GAGTC 2 cut(s) 167, 239
Ppu21I YACGTR 1 cut(s) 1219
PpuMI RGGWCCY 1 cut(s) 886
Psp5II RGGWCCY 1 cut(s) 886
Psp6I CCWGG 2 cut(s) 876, 1228
PspFI CCCAGC 2 cut(s) 1288, 1530
PspGI CCWGG 2 cut(s) 876, 1228
PspN4I GGNNCC 4 cut(s) 456, 579, 874, 1636
PspPI GGNCC 2 cut(s) 70, 886
PspPPI RGGWCCY 1 cut(s) 886
PsrI GAACNNNNNNTAC 2 cut(s) 793, 825
PstNI CAGNNNCTG 1 cut(s) 1046
PsuI RGATCY 2 cut(s) 1504, 1634
PvuII CAGCTG 3 cut(s) 451, 992, 1534
RsaI GTAC 3 cut(s) 224, 239, 1188
RsaNI GTAC 3 cut(s) 223, 238, 1187
RseI CAYNNNNRTG 1 cut(s) 636
SalI GTCGAC 1 cut(s) 1490
SaqAI TTAA 4 cut(s) 110, 324, 671, 960
SatI GCNGC 6 cut(s) 73, 662, 726, 854, 990, 1041
Sau3AI GATC 4 cut(s) 1048, 1504, 1519, 1634
Sau96I GGNCC 2 cut(s) 70, 886
ScaI AGTACT 1 cut(s) 1188
SchI GAGTC 2 cut(s) 168, 239
ScrFI CCNGG 2 cut(s) 878, 1230
SduI GDGCHC 1 cut(s) 414
SfaNI GCATC 2 cut(s) 7, 976
SfcI CTRYAG 1 cut(s) 81
SinI GGWCC 1 cut(s) 886
SmiMI CAYNNNNRTG 1 cut(s) 636
SmlI CTYRAG 3 cut(s) 513, 1010, 1278
SmoI CTYRAG 3 cut(s) 513, 1010, 1278
Sse9I AATT 4 cut(s) 319, 422, 1052, 1348
SsiI CCGC 4 cut(s) 73, 617, 854, 1253
SspI AATATT 1 cut(s) 1700
SspMI CTAG 1 cut(s) 863
StyD4I CCNGG 2 cut(s) 876, 1228
StyI CCWWGG 1 cut(s) 796
TaaI ACNGT 4 cut(s) 397, 477, 562, 1369
TaiI ACGT 2 cut(s) 1221, 1567
TaqI TCGA 3 cut(s) 504, 1491, 1550
TasI AATT 4 cut(s) 319, 422, 1052, 1348
TatI WGTACW 1 cut(s) 1186
TauI GCSGC 2 cut(s) 75, 856
TfiI GAWTC 3 cut(s) 1237, 1660, 1709
Tru1I TTAA 4 cut(s) 110, 324, 671, 960
Tru9I TTAA 4 cut(s) 110, 324, 671, 960
TscAI CASTG 2 cut(s) 643, 723
TseFI GTSAC 2 cut(s) 353, 714
TseI GCWGC 4 cut(s) 661, 725, 989, 1040
Tsp45I GTSAC 2 cut(s) 353, 714
TspDTI ATGAA 7 cut(s) 164, 1011, 1110, 1452, 1488, 1500, 1713
TspGWI ACGGA 2 cut(s) 76, 142
TspRI CASTG 2 cut(s) 643, 723
VneI GTGCAC 1 cut(s) 410
VpaK11BI GGWCC 1 cut(s) 886
XapI RAATTY 1 cut(s) 422
XceI RCATGY 4 cut(s) 556, 692, 732, 1393
XmiI GTMKAC 2 cut(s) 1221, 1491
XspI CTAG 1 cut(s) 863
ZrmI AGTACT 1 cut(s) 1188
Zsp2I ATGCAT 2 cut(s) 380, 690
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.