Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015893.1

Orthogroup ID

OG0002343

Physical Location & Seq

Genomic Coordinates Reverse (-)

20287 .. 22025

Gene Structure 1739 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015893.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

atggttgttgttcgctggtttcacaaagttgatgaggttggtatggtcttgcctctcaattttaatgatagagagattttcttctctctctgtcaccaacatctcagtattgaatggattgatggattggctactgtcctcagccccgtgcattttgagaaatttctgaaagaggcgaagcaaacacagccggaaccctttgtatgccataaacagtttgaaaatgatgatgtaaagacctttgacattactcaagttgaaggttattggaaacaggagatacttagatacatgcacacagttatcccttcaaaggttcatgtcagttctcaacaatctgttaatgagttgaaagtggaagaaattgctcatgccagtgatatcagacctaaaaagagaggtgaaaaacaaaccctgccgcagtatctagcagaaggttcccaggaagtcctgtcccaagatagtggcattagagggtgttggtttagagcattgattatcaagaagcataaagataaagttaaggtgcagtatcaagatattcaggatgcagctgatgaagctaacaaacttgagaggcatgatggttggtgggaaggcatagtacttcaaaaggaatatgaagacagacttcatgtatacttcccagttttgaaacaacttctgttctcgtattctatagtgacaatgatgccaagttcgacttattctgttattggagagaatcaggttttgattgcggggcgtagtgaagtgcgacattctcaagagtggctggggaaagattgggcttatatgaaggacaggccagaccttgtggtctcaatatcaagtactttagaaaccaagaaaactgttggaaactcatttgatggcatgttaggactgtctgaaatcagtgatagcagagagttgaagaaacttgaaacatctgctctttcctctgataatgacaaggatgaaaaagtcaatgaagtcaataaggttccagatcttttgaaggatgatctctttgcccagccgaagtggaagtctttgaggaagagaagacatggtaatggaagctctgcccgaaagctgcattttggtagtgatggtaaaagcacctctggcctcatgggatcaaaatcttgtggaagatatttgattccatcatctctcatggttgaccacgagaactgcaaatattttggggattctcttttcagtttgtcagttgtgccgccgtctttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Agenet BAH

Protein Analysis

411

Amino Acids

47.13

Weight (kDa)

6.58

Isoelectric Point (pI)

45.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002343)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68580 AT1G68580 AT1G68580 AT1G68580 AT1G68580
fragaria_vesca	FvH4_4g27610 FvH4_4g27610 FvH4_4g27610 FvH4_4g27610 FvH4_4g27610 FvH4_4g27610 FvH4_4g27610 FvH4_4g27610
malus_domestica	MD13G1043500.v1.1 MD16G1044300.v1.1
prunus_persica	Prupe.1G309000_v2.0.a1 Prupe.1G309000_v2.0.a1 Prupe.1G309000_v2.0.a1
pyrus_communis	pycom13g03830 pycom16g03850
rosa_chinensis	RchiOBHm_Chr3g0482621 RchiOBHm_Chr3g0482631 RchiOBHm_Chr3g0482641 RchiOBHm_Chr4g0435461
rosa_laevigata	RLG00000006591
rosa_multiflora	Rmu_sc0006069.1_g000002 Rmu_sc0015893.1_g000006 Rmu_sc0015893.1_g000007
rosa_roxburghii	Rroxscaffold_3G00234330 Rroxscaffold_5G00376690
rosa_rugosa	Rorug04G0285200
rosa_samantha	Rh3AG248900 Rh3CG281900 Rh3CG282000 Rh3CG282100 Rh3DG278100 Rh4AG340900 Rh4BG349200 Rh4CG363700 Rh4DG343400
rosa_wichuraiana	Rw3G022470 Rw4G029730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	818
AccI	GTMKAC	1 cut(s)	639
AciI	CCGC	3 cut(s)	419, 740, 1223
AclWI	GGATC	1 cut(s)	1129
AcsI	RAATTY	1 cut(s)	161
AfaI	GTAC	2 cut(s)	606, 835
AfiI	CCNNNNNNNGG	1 cut(s)	313
AjnI	CCWGG	1 cut(s)	441
AluBI	AGCT	4 cut(s)	554, 563, 1065, 1078
AluI	AGCT	4 cut(s)	554, 563, 1065, 1078
Alw26I	GTCTC	1 cut(s)	826
AlwI	GGATC	1 cut(s)	1129
AoxI	GGCC	2 cut(s)	806, 1111
ApeKI	GCWGC	2 cut(s)	551, 1078
ApoI	RAATTY	1 cut(s)	161
ArsI	GACNNNNNNTTYG	2 cut(s)	1016, 1048
AsuHPI	GGTGA	2 cut(s)	86, 413
BarI	GAAGNNNNNNTAC	2 cut(s)	588, 620
BauI	CACGAG	1 cut(s)	1172
BbsI	GAAGAC	2 cut(s)	630, 1054
BbvCI	CCTCAGC	1 cut(s)	140
BbvI	GCAGC	2 cut(s)	563, 1065
BccI	CCATC	5 cut(s)	116, 578, 866, 1088, 1159
BceAI	ACGGC	1 cut(s)	1210
BciT130I	CCWGG	1 cut(s)	443
BcoDI	GTCTC	1 cut(s)	826
BfaI	CTAG	2 cut(s)	428, 1234
BfmI	CTRYAG	1 cut(s)	678
BglII	AGATCT	1 cut(s)	991
BisI	GCNGC	4 cut(s)	419, 552, 1079, 1223
BlsI	GCNGC	4 cut(s)	420, 553, 1080, 1224
BmcAI	AGTACT	2 cut(s)	606, 835
Bme1390I	CCNGG	1 cut(s)	443
BmiI	GGNNCC	3 cut(s)	195, 439, 987
BmrFI	CCNGG	1 cut(s)	443
BmrI	ACTGGG	1 cut(s)	641
BmsI	GCATC	2 cut(s)	538, 681
BmuI	ACTGGG	1 cut(s)	641
BpiI	GAAGAC	2 cut(s)	630, 1054
Bpu10I	CCTNAGC	1 cut(s)	140
BpuEI	CTTGAG	3 cut(s)	237, 593, 750
BsaBI	GATNNNNATC	1 cut(s)	1126
BsaI	GGTCTC	1 cut(s)	826
BsaJI	CCNNGG	1 cut(s)	441
Bsc4I	CCNNNNNNNGG	1 cut(s)	313
Bse1I	ACTGG	2 cut(s)	375, 647
Bse8I	GATNNNNATC	1 cut(s)	1126
BseBI	CCWGG	1 cut(s)	443
BseDI	CCNNGG	1 cut(s)	441
BseGI	GGATG	3 cut(s)	553, 964, 1009
BseJI	GATNNNNATC	1 cut(s)	1126
BseLI	CCNNNNNNNGG	1 cut(s)	313
BseMII	CTCAG	2 cut(s)	118, 154
BseNI	ACTGG	2 cut(s)	375, 647
BseXI	GCAGC	2 cut(s)	563, 1065
BseYI	CCCAGC	2 cut(s)	775, 1017
BsgI	GTGCAG	1 cut(s)	548
BshFI	GGCC	2 cut(s)	808, 1113
BsiSI	CCGG	1 cut(s)	191
BslFI	GGGAC	1 cut(s)	439
BslI	CCNNNNNNNGG	1 cut(s)	313
BsmAI	GTCTC	1 cut(s)	826
BsmFI	GGGAC	1 cut(s)	439
BsnI	GGCC	2 cut(s)	808, 1113
Bso31I	GGTCTC	1 cut(s)	826
Bsp143I	GATC	3 cut(s)	991, 1006, 1121
BspACI	CCGC	3 cut(s)	419, 740, 1223
BspANI	GGCC	2 cut(s)	808, 1113
BspCNI	CTCAG	2 cut(s)	117, 153
BspLI	GGNNCC	3 cut(s)	195, 439, 987
BspPI	GGATC	1 cut(s)	1129
BspTNI	GGTCTC	1 cut(s)	826
BsrI	ACTGG	2 cut(s)	375, 647
BssECI	CCNNGG	1 cut(s)	441
BssMI	GATC	3 cut(s)	991, 1006, 1121
BssNAI	GTATAC	1 cut(s)	640
BssSI	CACGAG	1 cut(s)	1172
Bst1107I	GTATAC	1 cut(s)	640
Bst2BI	CACGAG	1 cut(s)	1172
Bst2UI	CCWGG	1 cut(s)	443
Bst4CI	ACNGT	5 cut(s)	136, 216, 301, 856, 888
Bst6I	CTCTTC	1 cut(s)	1037
BstDEI	CTNAG	3 cut(s)	104, 140, 284
BstF5I	GGATG	3 cut(s)	553, 964, 1009
BstKTI	GATC	3 cut(s)	994, 1009, 1124
BstMAI	GTCTC	1 cut(s)	826
BstMBI	GATC	3 cut(s)	991, 1006, 1121
BstMWI	GCNNNNNNNGC	3 cut(s)	187, 560, 1110
BstNI	CCWGG	1 cut(s)	443
BstNSI	RCATGY	2 cut(s)	295, 880
BstSCI	CCNGG	1 cut(s)	441
BstSFI	CTRYAG	1 cut(s)	678
BstV1I	GCAGC	2 cut(s)	563, 1065
BstV2I	GAAGAC	2 cut(s)	630, 1054
BstX2I	RGATCY	1 cut(s)	991
BstXI	CCANNNNNNTGG	1 cut(s)	464
BstYI	RGATCY	1 cut(s)	991
BstZ17I	GTATAC	1 cut(s)	640
BsuRI	GGCC	2 cut(s)	808, 1113
BtsCI	GGATG	3 cut(s)	553, 964, 1009
BtsIMutI	CAGTG	2 cut(s)	382, 904
Csp6I	GTAC	2 cut(s)	605, 834
CviAII	CATG	9 cut(s)	292, 320, 371, 581, 635, 877, 1052, 1117, 1162
CviQI	GTAC	2 cut(s)	605, 834
DdeI	CTNAG	3 cut(s)	104, 140, 284
DpnI	GATC	3 cut(s)	993, 1008, 1123
DpnII	GATC	3 cut(s)	991, 1006, 1121
DrdI	GACNNNNNNGTC	1 cut(s)	818
DseDI	GACNNNNNNGTC	1 cut(s)	818
Eam1104I	CTCTTC	1 cut(s)	1037
EarI	CTCTTC	1 cut(s)	1037
Eco31I	GGTCTC	1 cut(s)	826
Eco32I	GATATC	1 cut(s)	382
EcoRII	CCWGG	1 cut(s)	441
EcoRV	GATATC	1 cut(s)	382
FaeI	CATG	9 cut(s)	295, 323, 374, 584, 638, 880, 1055, 1120, 1165
FalI	AAGNNNNNCTT	4 cut(s)	615, 647, 688, 720
FaqI	GGGAC	1 cut(s)	439
FatI	CATG	9 cut(s)	291, 319, 370, 580, 634, 876, 1051, 1116, 1161
FauI	CCCGC	1 cut(s)	733
FblI	GTMKAC	1 cut(s)	639
Fnu4HI	GCNGC	4 cut(s)	419, 552, 1079, 1223
FokI	GGATG	3 cut(s)	560, 971, 1016
Fsp4HI	GCNGC	4 cut(s)	419, 552, 1079, 1223
FspBI	CTAG	2 cut(s)	428, 1234
GluI	GCNGC	4 cut(s)	419, 552, 1079, 1223
GsaI	CCCAGC	2 cut(s)	779, 1021
HaeIII	GGCC	2 cut(s)	808, 1113
HapII	CCGG	1 cut(s)	191
Hin1II	CATG	9 cut(s)	295, 323, 374, 584, 638, 880, 1055, 1120, 1165
HincII	GTYRAC	1 cut(s)	1168
HindII	GTYRAC	1 cut(s)	1168
HinfI	GANTC	3 cut(s)	724, 1147, 1196
HpaII	CCGG	1 cut(s)	191
HphI	GGTGA	2 cut(s)	86, 413
Hpy166II	GTNNAC	2 cut(s)	640, 1168
Hpy188I	TCNGA	4 cut(s)	168, 386, 892, 946
Hpy188III	TCNNGA	5 cut(s)	502, 536, 545, 767, 989
Hpy8I	GTNNAC	2 cut(s)	640, 1168
HpyAV	CCTTC	6 cut(s)	254, 318, 428, 590, 793, 994
HpyCH4III	ACNGT	5 cut(s)	136, 216, 301, 856, 888
HpyCH4V	TGCA	6 cut(s)	151, 295, 529, 551, 1081, 1182
HpyF10VI	GCNNNNNNNGC	3 cut(s)	187, 560, 1110
HpyF3I	CTNAG	3 cut(s)	104, 140, 284
Hsp92II	CATG	9 cut(s)	295, 323, 374, 584, 638, 880, 1055, 1120, 1165
Kzo9I	GATC	3 cut(s)	991, 1006, 1121
Lsp1109I	GCAGC	2 cut(s)	563, 1065
LweI	GCATC	2 cut(s)	538, 681
MaeI	CTAG	2 cut(s)	428, 1234
MaeIII	GTNAC	2 cut(s)	92, 682
MalI	GATC	3 cut(s)	993, 1008, 1123
MboI	GATC	3 cut(s)	991, 1006, 1121
MboII	GAAGA	7 cut(s)	73, 371, 635, 928, 1054, 1059, 1149
MflI	RGATCY	1 cut(s)	991
MluCI	AATT	3 cut(s)	58, 161, 363
MmeI	TCCRAC	1 cut(s)	838
MseI	TTAA	3 cut(s)	63, 342, 522
MslI	CAYNNNNRTG	2 cut(s)	375, 1056
MspA1I	CMGCKG	1 cut(s)	554
MspI	CCGG	1 cut(s)	191
MspR9I	CCNGG	1 cut(s)	443
MvaI	CCWGG	1 cut(s)	443
MwoI	GCNNNNNNNGC	3 cut(s)	187, 560, 1110
NdeII	GATC	3 cut(s)	991, 1006, 1121
NlaIII	CATG	9 cut(s)	295, 323, 374, 584, 638, 880, 1055, 1120, 1165
NlaIV	GGNNCC	3 cut(s)	195, 439, 987
NmuCI	GTSAC	2 cut(s)	92, 682
NspI	RCATGY	2 cut(s)	295, 880
PfeI	GAWTC	3 cut(s)	724, 1147, 1196
PkrI	GCNGC	4 cut(s)	420, 553, 1080, 1224
Psp6I	CCWGG	1 cut(s)	441
PspFI	CCCAGC	2 cut(s)	775, 1017
PspGI	CCWGG	1 cut(s)	441
PspN4I	GGNNCC	3 cut(s)	195, 439, 987
PsuI	RGATCY	1 cut(s)	991
PvuII	CAGCTG	1 cut(s)	554
RsaI	GTAC	2 cut(s)	606, 835
RsaNI	GTAC	2 cut(s)	605, 834
RseI	CAYNNNNRTG	2 cut(s)	375, 1056
SaqAI	TTAA	3 cut(s)	63, 342, 522
SatI	GCNGC	4 cut(s)	419, 552, 1079, 1223
Sau3AI	GATC	3 cut(s)	991, 1006, 1121
ScaI	AGTACT	2 cut(s)	606, 835
ScrFI	CCNGG	1 cut(s)	443
SfaNI	GCATC	2 cut(s)	538, 681
SfcI	CTRYAG	1 cut(s)	678
SmiMI	CAYNNNNRTG	2 cut(s)	375, 1056
SmlI	CTYRAG	3 cut(s)	252, 572, 765
SmoI	CTYRAG	3 cut(s)	252, 572, 765
Sse9I	AATT	3 cut(s)	58, 161, 363
SsiI	CCGC	3 cut(s)	419, 740, 1223
SspI	AATATT	1 cut(s)	1187
SspMI	CTAG	2 cut(s)	428, 1234
StyD4I	CCNGG	1 cut(s)	441
TaaI	ACNGT	5 cut(s)	136, 216, 301, 856, 888
TaqI	TCGA	1 cut(s)	701
TasI	AATT	3 cut(s)	58, 161, 363
TatI	WGTACW	2 cut(s)	604, 833
TauI	GCSGC	2 cut(s)	421, 1225
TfiI	GAWTC	3 cut(s)	724, 1147, 1196
Tru1I	TTAA	3 cut(s)	63, 342, 522
Tru9I	TTAA	3 cut(s)	63, 342, 522
TscAI	CASTG	2 cut(s)	382, 904
TseFI	GTSAC	2 cut(s)	92, 682
TseI	GCWGC	2 cut(s)	551, 1078
Tsp45I	GTSAC	2 cut(s)	92, 682
TspDTI	ATGAA	7 cut(s)	308, 573, 623, 636, 812, 975, 987
TspRI	CASTG	2 cut(s)	382, 904
XapI	RAATTY	1 cut(s)	161
XceI	RCATGY	2 cut(s)	295, 880
XmiI	GTMKAC	1 cut(s)	639
XspI	CTAG	2 cut(s)	428, 1234
ZrmI	AGTACT	2 cut(s)	606, 835

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.