Rh3AG248900

Agenet domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0002343
Physical Location & Seq
Reverse (-)
26724159 .. 26731262
7104 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG248900.1

Sequence Viewer

Length: 777 bp
ATGTTCAGGCGCGTCAAGATTGGAGACGGATGCGGAGATTGGAGACGGTCGGAATTTGCAGATGTGCTGCCTTGCGTACCATCTGGTCTAGGAAGCATGTTGGATGGTAAAGATACTGGCGAGGTCACTCACTTACGGAAGATGGGCCCCTATACTACAGGGTTAATGTTGTTAGGTTCTTCTTCAAAGCGAAGGAAGAAACGGAGGCATTATCAATCGTTCAGCCGTAATGGAGTTATAGTTTCTGTTCATGACTTTGTATTTGTTTTAGCAGAGGAGGAGGTGAAACAAACCCTGCCGCAGTATCTAGCAGAAGGTTCCCAGGAAGTCCTGTCCCAAGATAGTGGCATTAGAGGGTGTTGGTTTAGAGCATTGATTATCAAGAAGCATAAAGATAAAGTTAAGGTGCGGTATCAAGATATTCAGGATGCAGCTGATGAAGCTAACAAACTTGAGGAATGGATTTTAGCATCAAAGATTTCAGCTCCTGATCAATTGGGAGAGAATCAGGTTTTGATTGCGGGGCGTAGTGAAGTGCGACATTCTCAAGAGTGGCTGGGGAAATATTGGGCTTATATAAAGGTCAGGCCAGACCTTGTGGCCTCAATATCAAGTAATTTAGAAACCAAGAAAACTGTTGGAAACTCATTTGATGGCATGTTAGGGCTGTCTGAAATCAGTGATAGCAGAGAGTTGAAGAAACATGAAACTTCTGCTCTTTCCTCTGATAATGACAAGGATGAAAAAGTGAATGAAGTCAATAAGGTTCCCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet BAH

Protein Analysis

258

Amino Acids

29.08

Weight (kDa)

8.62

Isoelectric Point (pI)

48.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agenet PF05641 109 - 160 1.7e-15 Agenet domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 12
AciI CCGC 4 cut(s) 33, 299, 409, 521
AcsI RAATTY 1 cut(s) 53
AfaI GTAC 1 cut(s) 78
AgsI TTSAA 2 cut(s) 186, 697
AjnI CCWGG 1 cut(s) 321
AluBI AGCT 3 cut(s) 434, 443, 485
AluI AGCT 3 cut(s) 434, 443, 485
Alw26I GTCTC 2 cut(s) 18, 37
AlwNI CAGNNNCTG 1 cut(s) 488
AoxI GGCC 3 cut(s) 145, 587, 600
ApaI GGGCCC 1 cut(s) 149
ApeKI GCWGC 2 cut(s) 67, 431
ApoI RAATTY 1 cut(s) 53
ArsI GACNNNNNNTTYG 2 cut(s) 245, 277
AspLEI GCGC 1 cut(s) 12
AspS9I GGNCC 2 cut(s) 145, 146
AsuHPI GGTGA 1 cut(s) 295
BaeGI GKGCMC 1 cut(s) 149
BanII GRGCYC 1 cut(s) 149
BbvI GCAGC 2 cut(s) 54, 443
BccI CCATC 4 cut(s) 88, 98, 136, 647
BceAI ACGGC 1 cut(s) 210
BciT130I CCWGG 1 cut(s) 323
BclI TGATCA 1 cut(s) 490
BcoDI GTCTC 2 cut(s) 18, 37
BfaI CTAG 2 cut(s) 89, 308
BfmI CTRYAG 1 cut(s) 156
BisI GCNGC 3 cut(s) 68, 299, 432
BlsI GCNGC 3 cut(s) 69, 300, 433
Bme1390I CCNGG 1 cut(s) 323
BmgT120I GGNCC 2 cut(s) 145, 146
BmiI GGNNCC 4 cut(s) 147, 148, 319, 768
BmrFI CCNGG 1 cut(s) 323
BmsI GCATC 3 cut(s) 20, 418, 479
BpuEI CTTGAG 2 cut(s) 473, 531
BsaJI CCNNGG 1 cut(s) 321
BsaXI ACNNNNNCTCC 2 cut(s) 225, 255
Bse1I ACTGG 1 cut(s) 121
BseBI CCWGG 1 cut(s) 323
BseDI CCNNGG 1 cut(s) 321
BseGI GGATG 4 cut(s) 35, 109, 433, 745
BseNI ACTGG 1 cut(s) 121
BseRI GAGGAG 2 cut(s) 290, 293
BseSI GKGCMC 1 cut(s) 149
BseXI GCAGC 2 cut(s) 54, 443
BseYI CCCAGC 1 cut(s) 556
Bsh1236I CGCG 1 cut(s) 12
Bsh1285I CGRYCG 1 cut(s) 50
BshFI GGCC 3 cut(s) 147, 589, 602
BsiEI CGRYCG 1 cut(s) 50
BslFI GGGAC 1 cut(s) 319
BsmAI GTCTC 2 cut(s) 18, 37
BsmBI CGTCTC 2 cut(s) 18, 37
BsmFI GGGAC 1 cut(s) 319
BsnI GGCC 3 cut(s) 147, 589, 602
Bsp120I GGGCCC 1 cut(s) 145
Bsp1286I GDGCHC 1 cut(s) 149
Bsp143I GATC 1 cut(s) 490
BspACI CCGC 4 cut(s) 33, 299, 409, 521
BspANI GGCC 3 cut(s) 147, 589, 602
BspFNI CGCG 1 cut(s) 12
BspHI TCATGA 1 cut(s) 250
BspLI GGNNCC 4 cut(s) 147, 148, 319, 768
BsrI ACTGG 1 cut(s) 121
BssECI CCNNGG 1 cut(s) 321
BssMI GATC 1 cut(s) 490
Bst2UI CCWGG 1 cut(s) 323
Bst4CI ACNGT 2 cut(s) 48, 637
BstF5I GGATG 4 cut(s) 35, 109, 433, 745
BstFNI CGCG 1 cut(s) 12
BstHHI GCGC 1 cut(s) 12
BstKTI GATC 1 cut(s) 493
BstMAI GTCTC 2 cut(s) 18, 37
BstMBI GATC 1 cut(s) 490
BstMCI CGRYCG 1 cut(s) 50
BstMWI GCNNNNNNNGC 1 cut(s) 440
BstNI CCWGG 1 cut(s) 323
BstNSI RCATGY 2 cut(s) 100, 661
BstSCI CCNGG 1 cut(s) 321
BstSFI CTRYAG 1 cut(s) 156
BstSLI GKGCMC 1 cut(s) 149
BstUI CGCG 1 cut(s) 12
BstV1I GCAGC 2 cut(s) 54, 443
BstXI CCANNNNNNTGG 1 cut(s) 344
BsuRI GGCC 3 cut(s) 147, 589, 602
BtsCI GGATG 4 cut(s) 35, 109, 433, 745
BtsIMutI CAGTG 1 cut(s) 685
CaiI CAGNNNCTG 1 cut(s) 488
CciI TCATGA 1 cut(s) 250
CfoI GCGC 1 cut(s) 12
Cfr13I GGNCC 2 cut(s) 145, 146
Csp6I GTAC 1 cut(s) 77
CviAII CATG 4 cut(s) 97, 251, 658, 704
CviQI GTAC 1 cut(s) 77
DpnI GATC 1 cut(s) 492
DpnII GATC 1 cut(s) 490
Eco24I GRGCYC 1 cut(s) 149
EcoO109I RGGNCCY 1 cut(s) 146
EcoRII CCWGG 1 cut(s) 321
EcoT38I GRGCYC 1 cut(s) 149
Esp3I CGTCTC 2 cut(s) 18, 37
FaeI CATG 4 cut(s) 100, 254, 661, 707
FaiI YATR 9 cut(s) 98, 153, 239, 252, 390, 576, 578, 659, 705
FalI AAGNNNNNCTT 1 cut(s) 755
FaqI GGGAC 1 cut(s) 319
FatI CATG 4 cut(s) 96, 250, 657, 703
FauI CCCGC 1 cut(s) 514
FbaI TGATCA 1 cut(s) 490
Fnu4HI GCNGC 3 cut(s) 68, 299, 432
FokI GGATG 4 cut(s) 42, 116, 440, 752
FriOI GRGCYC 1 cut(s) 149
Fsp4HI GCNGC 3 cut(s) 68, 299, 432
FspBI CTAG 2 cut(s) 89, 308
GlaI GCGC 1 cut(s) 11
GluI GCNGC 3 cut(s) 68, 299, 432
GsaI CCCAGC 1 cut(s) 560
HaeIII GGCC 3 cut(s) 147, 589, 602
HhaI GCGC 1 cut(s) 12
Hin1II CATG 4 cut(s) 100, 254, 661, 707
Hin6I GCGC 1 cut(s) 10
HinP1I GCGC 1 cut(s) 10
HinfI GANTC 1 cut(s) 505
HphI GGTGA 1 cut(s) 295
Hpy188I TCNGA 3 cut(s) 52, 673, 727
Hpy188III TCNNGA 7 cut(s) 16, 251, 382, 416, 425, 488, 548
HpyAV CCTTC 2 cut(s) 186, 308
HpyCH4III ACNGT 2 cut(s) 48, 637
HpyCH4V TGCA 2 cut(s) 59, 431
HpyF10VI GCNNNNNNNGC 1 cut(s) 440
Hsp92II CATG 4 cut(s) 100, 254, 661, 707
HspAI GCGC 1 cut(s) 10
Ksp22I TGATCA 1 cut(s) 490
Kzo9I GATC 1 cut(s) 490
LmnI GCTCC 1 cut(s) 490
Lsp1109I GCAGC 2 cut(s) 54, 443
LweI GCATC 3 cut(s) 20, 418, 479
MaeI CTAG 2 cut(s) 89, 308
MaeIII GTNAC 1 cut(s) 124
MalI GATC 1 cut(s) 492
MboI GATC 1 cut(s) 490
MboII GAAGA 5 cut(s) 151, 171, 174, 208, 709
MfeI CAATTG 1 cut(s) 494
MhlI GDGCHC 1 cut(s) 149
MluCI AATT 3 cut(s) 53, 494, 616
MmeI TCCRAC 3 cut(s) 30, 81, 619
MnlI CCTC 9 cut(s) 115, 198, 268, 271, 274, 347, 448, 613, 733
MseI TTAA 2 cut(s) 164, 402
MspA1I CMGCKG 1 cut(s) 434
MspR9I CCNGG 1 cut(s) 323
MunI CAATTG 1 cut(s) 494
MvaI CCWGG 1 cut(s) 323
MvnI CGCG 1 cut(s) 12
MwoI GCNNNNNNNGC 1 cut(s) 440
NdeII GATC 1 cut(s) 490
NlaIII CATG 4 cut(s) 100, 254, 661, 707
NlaIV GGNNCC 4 cut(s) 147, 148, 319, 768
NmuCI GTSAC 1 cut(s) 124
NspI RCATGY 2 cut(s) 100, 661
PagI TCATGA 1 cut(s) 250
PfeI GAWTC 1 cut(s) 505
PkrI GCNGC 3 cut(s) 69, 300, 433
Psp6I CCWGG 1 cut(s) 321
PspFI CCCAGC 1 cut(s) 556
PspGI CCWGG 1 cut(s) 321
PspN4I GGNNCC 4 cut(s) 147, 148, 319, 768
PspOMI GGGCCC 1 cut(s) 145
PspPI GGNCC 2 cut(s) 145, 146
PstNI CAGNNNCTG 1 cut(s) 488
PvuII CAGCTG 1 cut(s) 434
RsaI GTAC 1 cut(s) 78
RsaNI GTAC 1 cut(s) 77
SaqAI TTAA 2 cut(s) 164, 402
SatI GCNGC 3 cut(s) 68, 299, 432
Sau3AI GATC 1 cut(s) 490
Sau96I GGNCC 2 cut(s) 145, 146
ScrFI CCNGG 1 cut(s) 323
SduI GDGCHC 1 cut(s) 149
SfaNI GCATC 3 cut(s) 20, 418, 479
SfcI CTRYAG 1 cut(s) 156
SmlI CTYRAG 2 cut(s) 452, 546
SmoI CTYRAG 2 cut(s) 452, 546
Sse9I AATT 3 cut(s) 53, 494, 616
SsiI CCGC 4 cut(s) 33, 299, 409, 521
SspI AATATT 1 cut(s) 566
SspMI CTAG 2 cut(s) 89, 308
StyD4I CCNGG 1 cut(s) 321
TaaI ACNGT 2 cut(s) 48, 637
TasI AATT 3 cut(s) 53, 494, 616
TauI GCSGC 1 cut(s) 301
TfiI GAWTC 1 cut(s) 505
Tru1I TTAA 2 cut(s) 164, 402
Tru9I TTAA 2 cut(s) 164, 402
TscAI CASTG 1 cut(s) 685
TseFI GTSAC 1 cut(s) 124
TseI GCWGC 2 cut(s) 67, 431
Tsp45I GTSAC 1 cut(s) 124
TspDTI ATGAA 5 cut(s) 239, 453, 720, 756, 768
TspGWI ACGGA 3 cut(s) 42, 151, 217
TspRI CASTG 1 cut(s) 685
XapI RAATTY 1 cut(s) 53
XceI RCATGY 2 cut(s) 100, 661
XspI CTAG 2 cut(s) 89, 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.