RchiOBHm_Chr3g0482631

Agenet domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0002343
Physical Location & Seq
Reverse (-)
28676740 .. 28677641
902 bp
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UTR
Exon/CDS
Intron
PRQ44747

Sequence Viewer

Length: 489 bp
ATGAGCCCCGTGCATTTTGAGAAATTTCGGAAAGAGGCGAAGCAAACACAGCTAGAACCCTTTGTATGCCATAAACAGTTTGAAAATGATGATGTAAAGACCTTTGACATTACTCAAGTTGAAGGTTATTGGAAACAGGAGATACTTAGATACATGCACACAGTTATCCCTTCAAAGGTTCATGTCAGTTCTCAACAATCTGTTAATGAGTTGAAAGTGGAAGAAATTGCTCATGCCAGTGATATGGATGTTGTGAAACAAACCCTGCCGCAGTATCTAGCAGAAGGTTCCCAGGAAGTCCTGTCCCAAGATAGTGGCATTAGAGGGTGTTGGTTTAGAGCATTGATTATCAAGAAGCATAAAGATAAAGTTAAGGTGCGGTATCAAGATATTCAGGATGCAGCTGATGAAGCTAACAAACTTGAGGAATGGATTTTAGCATCAAAGATTTCAGCTCCTGATCAATTGGGTGTTCGGCTTTCTGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet BAH

Protein Analysis

162

Amino Acids

18.69

Weight (kDa)

6.07

Isoelectric Point (pI)

56.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agenet PF05641 99 - 150 1e-15 Agenet domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 269, 379
AcsI RAATTY 1 cut(s) 23
AfiI CCNNNNNNNGG 1 cut(s) 175
AgsI TTSAA 4 cut(s) 83, 122, 174, 214
AjnI CCWGG 1 cut(s) 291
AluBI AGCT 4 cut(s) 52, 404, 413, 455
AluI AGCT 4 cut(s) 52, 404, 413, 455
AlwNI CAGNNNCTG 1 cut(s) 458
ApeKI GCWGC 1 cut(s) 401
ApoI RAATTY 1 cut(s) 23
BanII GRGCYC 1 cut(s) 8
BbvI GCAGC 1 cut(s) 413
BciT130I CCWGG 1 cut(s) 293
BclI TGATCA 1 cut(s) 460
BfaI CTAG 2 cut(s) 53, 278
BisI GCNGC 2 cut(s) 269, 402
BlsI GCNGC 2 cut(s) 270, 403
Bme1390I CCNGG 1 cut(s) 293
BmiI GGNNCC 1 cut(s) 289
BmrFI CCNGG 1 cut(s) 293
BmsI GCATC 2 cut(s) 388, 449
BpuEI CTTGAG 2 cut(s) 99, 443
BsaJI CCNNGG 1 cut(s) 291
Bsc4I CCNNNNNNNGG 1 cut(s) 175
Bse1I ACTGG 1 cut(s) 237
BseBI CCWGG 1 cut(s) 293
BseDI CCNNGG 1 cut(s) 291
BseGI GGATG 2 cut(s) 253, 403
BseLI CCNNNNNNNGG 1 cut(s) 175
BseNI ACTGG 1 cut(s) 237
BseXI GCAGC 1 cut(s) 413
BslFI GGGAC 1 cut(s) 289
BslI CCNNNNNNNGG 1 cut(s) 175
BsmFI GGGAC 1 cut(s) 289
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 1 cut(s) 460
BspACI CCGC 2 cut(s) 269, 379
BspLI GGNNCC 1 cut(s) 289
BsrI ACTGG 1 cut(s) 237
BssECI CCNNGG 1 cut(s) 291
BssMI GATC 1 cut(s) 460
Bst2UI CCWGG 1 cut(s) 293
Bst4CI ACNGT 2 cut(s) 78, 163
BstDEI CTNAG 1 cut(s) 146
BstF5I GGATG 2 cut(s) 253, 403
BstKTI GATC 1 cut(s) 463
BstMBI GATC 1 cut(s) 460
BstMWI GCNNNNNNNGC 2 cut(s) 49, 410
BstNI CCWGG 1 cut(s) 293
BstNSI RCATGY 1 cut(s) 157
BstSCI CCNGG 1 cut(s) 291
BstV1I GCAGC 1 cut(s) 413
BstXI CCANNNNNNTGG 2 cut(s) 244, 314
BtsCI GGATG 2 cut(s) 253, 403
BtsIMutI CAGTG 1 cut(s) 244
CaiI CAGNNNCTG 1 cut(s) 458
CviAII CATG 3 cut(s) 154, 182, 233
CviJI RGCY 6 cut(s) 6, 52, 404, 413, 455, 478
CviKI_1 RGCY 6 cut(s) 6, 52, 404, 413, 455, 478
DdeI CTNAG 1 cut(s) 146
DpnI GATC 1 cut(s) 462
DpnII GATC 1 cut(s) 460
Eco24I GRGCYC 1 cut(s) 8
EcoRII CCWGG 1 cut(s) 291
EcoT38I GRGCYC 1 cut(s) 8
FaeI CATG 3 cut(s) 157, 185, 236
FaiI YATR 7 cut(s) 67, 72, 155, 183, 234, 245, 360
FaqI GGGAC 1 cut(s) 289
FatI CATG 3 cut(s) 153, 181, 232
FbaI TGATCA 1 cut(s) 460
Fnu4HI GCNGC 2 cut(s) 269, 402
FokI GGATG 2 cut(s) 260, 410
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 2 cut(s) 269, 402
FspBI CTAG 2 cut(s) 53, 278
GluI GCNGC 2 cut(s) 269, 402
Hin1II CATG 3 cut(s) 157, 185, 236
Hpy188I TCNGA 1 cut(s) 30
Hpy188III TCNNGA 5 cut(s) 352, 386, 395, 458, 483
HpyAV CCTTC 3 cut(s) 116, 180, 278
HpyCH4III ACNGT 2 cut(s) 78, 163
HpyCH4V TGCA 3 cut(s) 13, 157, 401
HpyF10VI GCNNNNNNNGC 2 cut(s) 49, 410
HpyF3I CTNAG 1 cut(s) 146
Hsp92II CATG 3 cut(s) 157, 185, 236
Ksp22I TGATCA 1 cut(s) 460
Kzo9I GATC 1 cut(s) 460
LmnI GCTCC 1 cut(s) 460
LpnPI CCDG 9 cut(s) 122, 250, 278, 278, 305, 314, 380, 468, 471
Lsp1109I GCAGC 1 cut(s) 413
LweI GCATC 2 cut(s) 388, 449
MaeI CTAG 2 cut(s) 53, 278
MalI GATC 1 cut(s) 462
MboI GATC 1 cut(s) 460
MboII GAAGA 1 cut(s) 233
MfeI CAATTG 1 cut(s) 464
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 3 cut(s) 23, 225, 464
MnlI CCTC 3 cut(s) 28, 317, 418
MseI TTAA 2 cut(s) 204, 372
MslI CAYNNNNRTG 1 cut(s) 237
MspA1I CMGCKG 1 cut(s) 404
MspR9I CCNGG 1 cut(s) 293
MunI CAATTG 1 cut(s) 464
MvaI CCWGG 1 cut(s) 293
MwoI GCNNNNNNNGC 2 cut(s) 49, 410
NdeII GATC 1 cut(s) 460
NlaIII CATG 3 cut(s) 157, 185, 236
NlaIV GGNNCC 1 cut(s) 289
NspI RCATGY 1 cut(s) 157
PkrI GCNGC 2 cut(s) 270, 403
Psp6I CCWGG 1 cut(s) 291
PspGI CCWGG 1 cut(s) 291
PspN4I GGNNCC 1 cut(s) 289
PstNI CAGNNNCTG 1 cut(s) 458
PvuII CAGCTG 1 cut(s) 404
RseI CAYNNNNRTG 1 cut(s) 237
SaqAI TTAA 2 cut(s) 204, 372
SatI GCNGC 2 cut(s) 269, 402
Sau3AI GATC 1 cut(s) 460
ScrFI CCNGG 1 cut(s) 293
SduI GDGCHC 1 cut(s) 8
SetI ASST 9 cut(s) 54, 104, 127, 180, 289, 378, 406, 415, 457
SfaNI GCATC 2 cut(s) 388, 449
SmiMI CAYNNNNRTG 1 cut(s) 237
SmlI CTYRAG 2 cut(s) 114, 422
SmoI CTYRAG 2 cut(s) 114, 422
Sse9I AATT 3 cut(s) 23, 225, 464
SsiI CCGC 2 cut(s) 269, 379
SspMI CTAG 2 cut(s) 53, 278
StyD4I CCNGG 1 cut(s) 291
TaaI ACNGT 2 cut(s) 78, 163
TasI AATT 3 cut(s) 23, 225, 464
TauI GCSGC 1 cut(s) 271
Tru1I TTAA 2 cut(s) 204, 372
Tru9I TTAA 2 cut(s) 204, 372
TscAI CASTG 1 cut(s) 244
TseI GCWGC 1 cut(s) 401
TspDTI ATGAA 2 cut(s) 170, 423
TspRI CASTG 1 cut(s) 244
XapI RAATTY 1 cut(s) 23
XceI RCATGY 1 cut(s) 157
XspI CTAG 2 cut(s) 53, 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.