Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006069.1

Orthogroup ID

OG0002343

Physical Location & Seq

Genomic Coordinates Reverse (-)

3884 .. 5614

Gene Structure 1731 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006069.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1296 bp

atggttgttgttcgctggtttcacaaagttgatgaggttggtatggtcttgcctctcaattttaatcatagagagattttcttctctctctgtcaccaacatctcagtattgaatggattgatggattggctactgtcctcagccccgtgcattttgagaaatttctgaaagaggcgaagcaaacacagctggaaccctttgtatgtcataaacagtttgaaaatgatgatgtaaagcccttcgacattactcaagttgaaggttattggaaacaggagaacttagatacatgcacacagttatcccttcaaagaggtgaaaaacaaaccctgccgcagtatctagcagaaggttcccaggaagtcctgtcccaagatagtggcattagagggtgttggtttagagcattgattatcaagaagcataaagataaagttaaggtgcaatatcaagatattcaggatgcagctgatgaagctaacaaacttgaggaatggattttagcgtcaaagattgcagctcctgatcaattggggcttcggctttctgataggccaagtattcggccatgtataaagtcaaataaaggtagagtttcatggtctgttggtgttgcgagtgttgttgatgtctggaggcatgatggttggtgggaaggcatagtacttcaaaaggaatatgaagacagacttcatgtatacttcccagttttgaaacaacttctgttctcgtattctatagtgacaatgatgccaagttcgacttattctgttattggagagaatcaggttttgattgcggggcgtagtgaagtgcgacattctcaagagtggctggggaaagattgggcttatatgaaggacaggtcagaccttgtggtctcaatatcaagtactttagaaaccaagaaaactgttggaaactcatttgatggcatgttaggactgtctgaaatcagtgatagcagagagttgaagaaacttgaaacatctgctctttcctctgataatgacaaggatgaaaaagtcaatgaagtcaataaggttccagatcttttgaaggatgatctctttgcccagccaaagtggaagtctttgaggaagagaagacatggtaatggaagctctgcccgaaagctgcattttggtagtgatggtaaaagcacctctggcctcatgggatcaaaatcttgtggaagatatttgattccatcatctctcatggttgaccacgagaactgcaaatattttggggattctcttttcagtttgtcagttgtgccgccgtctttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Agenet BAH

Protein Analysis

431

Amino Acids

49.16

Weight (kDa)

6.68

Isoelectric Point (pI)

39.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002343)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68580 AT1G68580 AT1G68580 AT1G68580 AT1G68580
fragaria_vesca	FvH4_4g27610 FvH4_4g27610 FvH4_4g27610 FvH4_4g27610 FvH4_4g27610 FvH4_4g27610 FvH4_4g27610 FvH4_4g27610
malus_domestica	MD13G1043500.v1.1 MD16G1044300.v1.1
prunus_persica	Prupe.1G309000_v2.0.a1 Prupe.1G309000_v2.0.a1 Prupe.1G309000_v2.0.a1
pyrus_communis	pycom13g03830 pycom16g03850
rosa_chinensis	RchiOBHm_Chr3g0482621 RchiOBHm_Chr3g0482631 RchiOBHm_Chr3g0482641 RchiOBHm_Chr4g0435461
rosa_laevigata	RLG00000006591
rosa_multiflora	Rmu_sc0006069.1_g000002 Rmu_sc0015893.1_g000006 Rmu_sc0015893.1_g000007
rosa_roxburghii	Rroxscaffold_3G00234330 Rroxscaffold_5G00376690
rosa_rugosa	Rorug04G0285200
rosa_samantha	Rh3AG248900 Rh3CG281900 Rh3CG282000 Rh3CG282100 Rh3DG278100 Rh4AG340900 Rh4BG349200 Rh4CG363700 Rh4DG343400
rosa_wichuraiana	Rw3G022470 Rw4G029730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	878
AccI	GTMKAC	1 cut(s)	699
AciI	CCGC	3 cut(s)	335, 800, 1283
AclWI	GGATC	1 cut(s)	1189
AcoI	YGGCCR	1 cut(s)	566
AcsI	RAATTY	1 cut(s)	161
AfaI	GTAC	2 cut(s)	666, 895
AgsI	TTSAA	9 cut(s)	113, 221, 260, 311, 671, 715, 976, 986, 1060
AjnI	CCWGG	1 cut(s)	357
AluBI	AGCT	6 cut(s)	190, 470, 479, 521, 1125, 1138
AluI	AGCT	6 cut(s)	190, 470, 479, 521, 1125, 1138
Alw26I	GTCTC	1 cut(s)	886
AlwI	GGATC	1 cut(s)	1189
AlwNI	CAGNNNCTG	1 cut(s)	524
AoxI	GGCC	3 cut(s)	554, 566, 1171
ApeKI	GCWGC	3 cut(s)	467, 518, 1138
ApoI	RAATTY	1 cut(s)	161
ArsI	GACNNNNNNTTYG	2 cut(s)	1076, 1108
AsuHPI	GGTGA	2 cut(s)	86, 329
BarI	GAAGNNNNNNTAC	2 cut(s)	648, 680
BauI	CACGAG	1 cut(s)	1232
BbsI	GAAGAC	2 cut(s)	690, 1114
BbvCI	CCTCAGC	1 cut(s)	140
BbvI	GCAGC	3 cut(s)	479, 530, 1125
BccI	CCATC	5 cut(s)	116, 638, 926, 1148, 1219
BceAI	ACGGC	1 cut(s)	1270
BciT130I	CCWGG	1 cut(s)	359
BclI	TGATCA	1 cut(s)	526
BcoDI	GTCTC	1 cut(s)	886
BfaI	CTAG	2 cut(s)	344, 1294
BfmI	CTRYAG	1 cut(s)	738
BglII	AGATCT	1 cut(s)	1051
BisI	GCNGC	5 cut(s)	335, 468, 519, 1139, 1283
BlsI	GCNGC	5 cut(s)	336, 469, 520, 1140, 1284
BmcAI	AGTACT	2 cut(s)	666, 895
Bme1390I	CCNGG	1 cut(s)	359
BmiI	GGNNCC	3 cut(s)	195, 355, 1047
BmrFI	CCNGG	1 cut(s)	359
BmrI	ACTGGG	1 cut(s)	701
BmsI	GCATC	2 cut(s)	454, 741
BmuI	ACTGGG	1 cut(s)	701
BpiI	GAAGAC	2 cut(s)	690, 1114
BpmI	CTGGAG	1 cut(s)	655
Bpu10I	CCTNAGC	1 cut(s)	140
BpuEI	CTTGAG	3 cut(s)	237, 509, 810
BsaBI	GATNNNNATC	1 cut(s)	1186
BsaI	GGTCTC	1 cut(s)	886
BsaJI	CCNNGG	1 cut(s)	357
Bse1I	ACTGG	1 cut(s)	707
Bse8I	GATNNNNATC	1 cut(s)	1186
BseBI	CCWGG	1 cut(s)	359
BseDI	CCNNGG	1 cut(s)	357
BseGI	GGATG	3 cut(s)	469, 1024, 1069
BseJI	GATNNNNATC	1 cut(s)	1186
BseMII	CTCAG	2 cut(s)	118, 154
BseNI	ACTGG	1 cut(s)	707
BseXI	GCAGC	3 cut(s)	479, 530, 1125
BseYI	CCCAGC	2 cut(s)	835, 1077
BshFI	GGCC	3 cut(s)	556, 568, 1173
BslFI	GGGAC	1 cut(s)	355
BsmAI	GTCTC	1 cut(s)	886
BsmFI	GGGAC	1 cut(s)	355
BsnI	GGCC	3 cut(s)	556, 568, 1173
Bso31I	GGTCTC	1 cut(s)	886
Bsp143I	GATC	4 cut(s)	526, 1051, 1066, 1181
BspACI	CCGC	3 cut(s)	335, 800, 1283
BspANI	GGCC	3 cut(s)	556, 568, 1173
BspCNI	CTCAG	2 cut(s)	117, 153
BspLI	GGNNCC	3 cut(s)	195, 355, 1047
BspPI	GGATC	1 cut(s)	1189
BspTNI	GGTCTC	1 cut(s)	886
BsrI	ACTGG	1 cut(s)	707
BssECI	CCNNGG	1 cut(s)	357
BssMI	GATC	4 cut(s)	526, 1051, 1066, 1181
BssNAI	GTATAC	1 cut(s)	700
BssSI	CACGAG	1 cut(s)	1232
Bst1107I	GTATAC	1 cut(s)	700
Bst2BI	CACGAG	1 cut(s)	1232
Bst2UI	CCWGG	1 cut(s)	359
Bst4CI	ACNGT	5 cut(s)	136, 216, 300, 916, 948
Bst6I	CTCTTC	1 cut(s)	1097
BstDEI	CTNAG	3 cut(s)	104, 140, 283
BstF5I	GGATG	3 cut(s)	469, 1024, 1069
BstKTI	GATC	4 cut(s)	529, 1054, 1069, 1184
BstMAI	GTCTC	1 cut(s)	886
BstMBI	GATC	4 cut(s)	526, 1051, 1066, 1181
BstMWI	GCNNNNNNNGC	3 cut(s)	187, 476, 1170
BstNI	CCWGG	1 cut(s)	359
BstNSI	RCATGY	2 cut(s)	294, 940
BstSCI	CCNGG	1 cut(s)	357
BstSFI	CTRYAG	1 cut(s)	738
BstV1I	GCAGC	3 cut(s)	479, 530, 1125
BstV2I	GAAGAC	2 cut(s)	690, 1114
BstX2I	RGATCY	1 cut(s)	1051
BstXI	CCANNNNNNTGG	1 cut(s)	380
BstYI	RGATCY	1 cut(s)	1051
BstZ17I	GTATAC	1 cut(s)	700
BsuRI	GGCC	3 cut(s)	556, 568, 1173
BtsCI	GGATG	3 cut(s)	469, 1024, 1069
BtsIMutI	CAGTG	1 cut(s)	964
CaiI	CAGNNNCTG	1 cut(s)	524
CseI	GACGC	1 cut(s)	495
Csp6I	GTAC	2 cut(s)	665, 894
CviAII	CATG	9 cut(s)	291, 570, 600, 641, 695, 937, 1112, 1177, 1222
CviQI	GTAC	2 cut(s)	665, 894
DdeI	CTNAG	3 cut(s)	104, 140, 283
DpnI	GATC	4 cut(s)	528, 1053, 1068, 1183
DpnII	GATC	4 cut(s)	526, 1051, 1066, 1181
DrdI	GACNNNNNNGTC	1 cut(s)	878
DseDI	GACNNNNNNGTC	1 cut(s)	878
EaeI	YGGCCR	1 cut(s)	566
Eam1104I	CTCTTC	1 cut(s)	1097
EarI	CTCTTC	1 cut(s)	1097
Eco31I	GGTCTC	1 cut(s)	886
EcoRII	CCWGG	1 cut(s)	357
FaeI	CATG	9 cut(s)	294, 573, 603, 644, 698, 940, 1115, 1180, 1225
FalI	AAGNNNNNCTT	4 cut(s)	675, 707, 748, 780
FaqI	GGGAC	1 cut(s)	355
FatI	CATG	9 cut(s)	290, 569, 599, 640, 694, 936, 1111, 1176, 1221
FauI	CCCGC	1 cut(s)	793
FbaI	TGATCA	1 cut(s)	526
FblI	GTMKAC	1 cut(s)	699
Fnu4HI	GCNGC	5 cut(s)	335, 468, 519, 1139, 1283
FokI	GGATG	3 cut(s)	476, 1031, 1076
Fsp4HI	GCNGC	5 cut(s)	335, 468, 519, 1139, 1283
FspBI	CTAG	2 cut(s)	344, 1294
GluI	GCNGC	5 cut(s)	335, 468, 519, 1139, 1283
GsaI	CCCAGC	2 cut(s)	839, 1081
GsuI	CTGGAG	1 cut(s)	655
HaeIII	GGCC	3 cut(s)	556, 568, 1173
HgaI	GACGC	1 cut(s)	495
Hin1II	CATG	9 cut(s)	294, 573, 603, 644, 698, 940, 1115, 1180, 1225
HincII	GTYRAC	1 cut(s)	1228
HindII	GTYRAC	1 cut(s)	1228
HinfI	GANTC	3 cut(s)	784, 1207, 1256
HphI	GGTGA	2 cut(s)	86, 329
Hpy166II	GTNNAC	2 cut(s)	700, 1228
Hpy188I	TCNGA	5 cut(s)	168, 550, 871, 952, 1006
Hpy188III	TCNNGA	7 cut(s)	418, 452, 461, 524, 634, 827, 1049
Hpy8I	GTNNAC	2 cut(s)	700, 1228
HpyAV	CCTTC	7 cut(s)	250, 254, 317, 344, 650, 853, 1054
HpyCH4III	ACNGT	5 cut(s)	136, 216, 300, 916, 948
HpyCH4V	TGCA	7 cut(s)	151, 294, 445, 467, 518, 1141, 1242
HpyF10VI	GCNNNNNNNGC	3 cut(s)	187, 476, 1170
HpyF3I	CTNAG	3 cut(s)	104, 140, 283
Hsp92II	CATG	9 cut(s)	294, 573, 603, 644, 698, 940, 1115, 1180, 1225
Ksp22I	TGATCA	1 cut(s)	526
Kzo9I	GATC	4 cut(s)	526, 1051, 1066, 1181
LmnI	GCTCC	1 cut(s)	526
Lsp1109I	GCAGC	3 cut(s)	479, 530, 1125
LweI	GCATC	2 cut(s)	454, 741
MaeI	CTAG	2 cut(s)	344, 1294
MaeIII	GTNAC	2 cut(s)	92, 742
MalI	GATC	4 cut(s)	528, 1053, 1068, 1183
MboI	GATC	4 cut(s)	526, 1051, 1066, 1181
MboII	GAAGA	6 cut(s)	73, 695, 988, 1114, 1119, 1209
MfeI	CAATTG	1 cut(s)	530
MflI	RGATCY	1 cut(s)	1051
MluCI	AATT	3 cut(s)	58, 161, 530
MmeI	TCCRAC	1 cut(s)	898
MseI	TTAA	2 cut(s)	63, 438
MslI	CAYNNNNRTG	1 cut(s)	1116
MspA1I	CMGCKG	2 cut(s)	190, 470
MspR9I	CCNGG	1 cut(s)	359
MunI	CAATTG	1 cut(s)	530
MvaI	CCWGG	1 cut(s)	359
MwoI	GCNNNNNNNGC	3 cut(s)	187, 476, 1170
NdeII	GATC	4 cut(s)	526, 1051, 1066, 1181
NlaIII	CATG	9 cut(s)	294, 573, 603, 644, 698, 940, 1115, 1180, 1225
NlaIV	GGNNCC	3 cut(s)	195, 355, 1047
NmuCI	GTSAC	2 cut(s)	92, 742
NspI	RCATGY	2 cut(s)	294, 940
PfeI	GAWTC	3 cut(s)	784, 1207, 1256
PkrI	GCNGC	5 cut(s)	336, 469, 520, 1140, 1284
Psp6I	CCWGG	1 cut(s)	357
PspFI	CCCAGC	2 cut(s)	835, 1077
PspGI	CCWGG	1 cut(s)	357
PspN4I	GGNNCC	3 cut(s)	195, 355, 1047
PstNI	CAGNNNCTG	1 cut(s)	524
PsuI	RGATCY	1 cut(s)	1051
PvuII	CAGCTG	2 cut(s)	190, 470
RsaI	GTAC	2 cut(s)	666, 895
RsaNI	GTAC	2 cut(s)	665, 894
RseI	CAYNNNNRTG	1 cut(s)	1116
SaqAI	TTAA	2 cut(s)	63, 438
SatI	GCNGC	5 cut(s)	335, 468, 519, 1139, 1283
Sau3AI	GATC	4 cut(s)	526, 1051, 1066, 1181
ScaI	AGTACT	2 cut(s)	666, 895
ScrFI	CCNGG	1 cut(s)	359
SfaNI	GCATC	2 cut(s)	454, 741
SfcI	CTRYAG	1 cut(s)	738
SmiMI	CAYNNNNRTG	1 cut(s)	1116
SmlI	CTYRAG	3 cut(s)	252, 488, 825
SmoI	CTYRAG	3 cut(s)	252, 488, 825
Sse9I	AATT	3 cut(s)	58, 161, 530
SsiI	CCGC	3 cut(s)	335, 800, 1283
SspI	AATATT	1 cut(s)	1247
SspMI	CTAG	2 cut(s)	344, 1294
StyD4I	CCNGG	1 cut(s)	357
TaaI	ACNGT	5 cut(s)	136, 216, 300, 916, 948
TaqI	TCGA	2 cut(s)	243, 761
TasI	AATT	3 cut(s)	58, 161, 530
TatI	WGTACW	2 cut(s)	664, 893
TauI	GCSGC	2 cut(s)	337, 1285
TfiI	GAWTC	3 cut(s)	784, 1207, 1256
Tru1I	TTAA	2 cut(s)	63, 438
Tru9I	TTAA	2 cut(s)	63, 438
TscAI	CASTG	1 cut(s)	964
TseFI	GTSAC	2 cut(s)	92, 742
TseI	GCWGC	3 cut(s)	467, 518, 1138
Tsp45I	GTSAC	2 cut(s)	92, 742
TspDTI	ATGAA	7 cut(s)	489, 588, 683, 696, 872, 1035, 1047
TspRI	CASTG	1 cut(s)	964
XapI	RAATTY	1 cut(s)	161
XceI	RCATGY	2 cut(s)	294, 940
XmiI	GTMKAC	1 cut(s)	699
XspI	CTAG	2 cut(s)	344, 1294
ZrmI	AGTACT	2 cut(s)	666, 895

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.