Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0002343

Physical Location & Seq

Genomic Coordinates Forward (+)

2554049 .. 2555513

Gene Structure 1465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g03830.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGCACACACTTGCTTCTTCAAAGGTTCAAGGGAGTTCTCAACAGCCAGATGAAGGGTTGGAACTGGAAGAAAATGATGGTGCCAATGATATCAGACCTAAAAAGAGGCATCATTCTTCAAGAAATGATGACATGCGCTTGCAATACTGTGACCGAAAGGAGTCTCCGGATGCTGTATATGGGAGTGTGGTGAATCTAAGTAAAGATGGGACTAATTGCAGAAGTAAAAGTGAAGCCTTTTGCCTTGGAAGAGGAGGTTCTTCTGTTTTACCTCGTAAAGACGTGAAGAAAATTCCGCAGCACCATTTAGTGATTGGCTCCCAGGTTGAAGTCCTCTCACAAGACAGTGGCATTAGAGGGTGTTGGTTCAAAGCTTTGATTATCAAAACGTACAAAGATAAAGTGAAGGTGCAATATCAAGATATTCAGGATGCAGCTGATGAAGCTAAAAAACTGGAGGAATGGATTTTGGCCTCTAAGCTTGCAGCTTCTGATCAACTTGGTCTTTGGACTTGTGGTAGGCCAATTGTTCGGCCATCTCCACCGTCTAACAAAGGCAGAGTTTCATGGGCTGTTGATGTTGGGACTGTTGTGGATGTCTGGTGGCACGATGGATGGTGGGAAGGGATTGTAGTGCAGAAGGATTCTGATGGCAGACTGCATGTGTATTCCCCAGGAGAGAAGCAGGTGTTGATTGTTGGTCGTGGTGAATTAAGACATTCTCAAGAGTGGTTGGGTAAAGGATGGGCTCAAATTAATGACAGGCCGGAACTTGTGAGCTTAATCTCATGTAGTTTAGAAACAAAGCAAGTTGTGGGAAAGTGTTCAGATGACATGTCAGCACAATCTGCAGTCTGCGATAGTGAGCCGCTAGAGAAAGAAGAAACCAGATGGAATAATTCTGTTCCGCTCGCTGAAGATGATAAAGATGAAAGGGTTAAAGAACTGGGCAAGGTTCCAGATCTTTTGAAGGATGATCTACTTGCCCAGCTGAAGTGGAGGTCCTCAAGGAAGAGAAGACGTGGTAACGGAAAATCTGTCCAGAAGCTGCATTGCGTTGTTTCGGATGGTAAAAGCACCCGTGGCCTTGTGGGATCCGGTGCTTGTGAAAGTTTTATGATTTCATCGTCGCTGAAAGTTGACCATGAGAACTGCAAATATTTAGGGGATTCTCTTTTCAGTTCTTCAGTCGCGCCTCCGCTAACAAGTTTAGTGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Agenet BAH

Protein Analysis

407

Amino Acids

45.1

Weight (kDa)

7.55

Isoelectric Point (pI)

43.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002343)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68580 AT1G68580 AT1G68580 AT1G68580 AT1G68580
fragaria_vesca	FvH4_4g27610 FvH4_4g27610 FvH4_4g27610 FvH4_4g27610 FvH4_4g27610 FvH4_4g27610 FvH4_4g27610 FvH4_4g27610
malus_domestica	MD13G1043500.v1.1 MD16G1044300.v1.1
prunus_persica	Prupe.1G309000_v2.0.a1 Prupe.1G309000_v2.0.a1 Prupe.1G309000_v2.0.a1
pyrus_communis	pycom13g03830 pycom16g03850
rosa_chinensis	RchiOBHm_Chr3g0482621 RchiOBHm_Chr3g0482631 RchiOBHm_Chr3g0482641 RchiOBHm_Chr4g0435461
rosa_laevigata	RLG00000006591
rosa_multiflora	Rmu_sc0006069.1_g000002 Rmu_sc0015893.1_g000006 Rmu_sc0015893.1_g000007
rosa_roxburghii	Rroxscaffold_3G00234330 Rroxscaffold_5G00376690
rosa_rugosa	Rorug04G0285200
rosa_samantha	Rh3AG248900 Rh3CG281900 Rh3CG282000 Rh3CG282100 Rh3DG278100 Rh4AG340900 Rh4BG349200 Rh4CG363700 Rh4DG343400
rosa_wichuraiana	Rw3G022470 Rw4G029730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	676
Acc36I	ACCTGC	1 cut(s)	676
AccB1I	GGYRCC	1 cut(s)	80
AccBSI	CCGCTC	1 cut(s)	910
AccII	CGCG	1 cut(s)	1193
AccIII	TCCGGA	1 cut(s)	166
AciI	CCGC	4 cut(s)	296, 869, 908, 1199
AclWI	GGATC	2 cut(s)	1089, 1102
AcoI	YGGCCR	1 cut(s)	533
AcsI	RAATTY	1 cut(s)	291
AcuI	CTGAAG	3 cut(s)	936, 1013, 1170
AfaI	GTAC	1 cut(s)	392
AfiI	CCNNNNNNNGG	1 cut(s)	53
AflIII	ACRYGT	1 cut(s)	834
AgsI	TTSAA	6 cut(s)	21, 29, 120, 329, 370, 970
AjiI	CACGTC	2 cut(s)	283, 1022
AjnI	CCWGG	2 cut(s)	321, 673
AluBI	AGCT	8 cut(s)	374, 437, 446, 481, 488, 780, 991, 1048
AluI	AGCT	8 cut(s)	374, 437, 446, 481, 488, 780, 991, 1048
Alw26I	GTCTC	1 cut(s)	168
AlwI	GGATC	2 cut(s)	1089, 1102
AlwNI	CAGNNNCTG	2 cut(s)	491, 1048
Aor13HI	TCCGGA	1 cut(s)	166
AoxI	GGCC	5 cut(s)	471, 521, 533, 764, 1084
ApeKI	GCWGC	4 cut(s)	298, 434, 485, 1048
ApoI	RAATTY	1 cut(s)	291
AseI	ATTAAT	1 cut(s)	756
Asp700I	GAANNNNTTC	1 cut(s)	823
AspLEI	GCGC	2 cut(s)	138, 1195
AspS9I	GGNCC	1 cut(s)	1002
AsuHPI	GGTGA	2 cut(s)	202, 719
AvaII	GGWCC	1 cut(s)	1002
BamHI	GGATCC	1 cut(s)	1094
BanI	GGYRCC	1 cut(s)	80
BanII	GRGCYC	1 cut(s)	751
BbsI	GAAGAC	1 cut(s)	1024
BbvI	GCAGC	4 cut(s)	310, 446, 497, 1035
BccI	CCATC	9 cut(s)	71, 200, 544, 605, 609, 644, 738, 885, 1061
BciT130I	CCWGG	2 cut(s)	323, 675
BclI	TGATCA	1 cut(s)	493
BcoDI	GTCTC	1 cut(s)	168
BfaI	CTAG	1 cut(s)	872
BfmI	CTRYAG	1 cut(s)	849
BfuAI	ACCTGC	1 cut(s)	676
BglII	AGATCT	1 cut(s)	961
BisI	GCNGC	5 cut(s)	299, 435, 486, 869, 1049
BlsI	GCNGC	5 cut(s)	300, 436, 487, 870, 1050
Bme1390I	CCNGG	2 cut(s)	323, 675
Bme18I	GGWCC	1 cut(s)	1002
BmgBI	CACGTC	2 cut(s)	283, 1022
BmgT120I	GGNCC	1 cut(s)	1002
BmiI	GGNNCC	4 cut(s)	82, 319, 957, 1096
BmrFI	CCNGG	2 cut(s)	323, 675
BmrI	ACTGGG	1 cut(s)	956
BmsI	GCATC	3 cut(s)	118, 160, 421
BmuI	ACTGGG	1 cut(s)	956
BpiI	GAAGAC	1 cut(s)	1024
BpmI	CTGGAG	1 cut(s)	476
BpuEI	CTTGAG	2 cut(s)	708, 991
BsaJI	CCNNGG	4 cut(s)	244, 321, 673, 1081
BsaWI	WCCGGW	2 cut(s)	166, 1097
Bsc4I	CCNNNNNNNGG	1 cut(s)	53
Bse1I	ACTGG	3 cut(s)	69, 459, 951
Bse3DI	GCAATG	1 cut(s)	1051
BseAI	TCCGGA	1 cut(s)	166
BseBI	CCWGG	2 cut(s)	323, 675
BseDI	CCNNGG	4 cut(s)	244, 321, 673, 1081
BseGI	GGATG	7 cut(s)	175, 436, 601, 620, 749, 979, 1072
BseLI	CCNNNNNNNGG	1 cut(s)	53
BseMI	GCAATG	1 cut(s)	1051
BseNI	ACTGG	3 cut(s)	69, 459, 951
BseRI	GAGGAG	1 cut(s)	267
BseXI	GCAGC	4 cut(s)	310, 446, 497, 1035
BseYI	CCCAGC	1 cut(s)	987
BsgI	GTGCAG	1 cut(s)	656
Bsh1236I	CGCG	1 cut(s)	1193
BshFI	GGCC	5 cut(s)	473, 523, 535, 766, 1086
BshNI	GGYRCC	1 cut(s)	80
BsiSI	CCGG	3 cut(s)	167, 767, 1098
BslFI	GGGAC	2 cut(s)	223, 598
BslI	CCNNNNNNNGG	1 cut(s)	53
BsmAI	GTCTC	1 cut(s)	168
BsmFI	GGGAC	2 cut(s)	223, 598
BsnI	GGCC	5 cut(s)	473, 523, 535, 766, 1086
Bsp1286I	GDGCHC	1 cut(s)	751
Bsp13I	TCCGGA	1 cut(s)	166
Bsp143I	GATC	4 cut(s)	493, 961, 976, 1094
BspACI	CCGC	4 cut(s)	296, 869, 908, 1199
BspANI	GGCC	5 cut(s)	473, 523, 535, 766, 1086
BspEI	TCCGGA	1 cut(s)	166
BspFNI	CGCG	1 cut(s)	1193
BspLI	GGNNCC	4 cut(s)	82, 319, 957, 1096
BspMAI	CTGCAG	1 cut(s)	853
BspMI	ACCTGC	1 cut(s)	676
BspPI	GGATC	2 cut(s)	1089, 1102
BspT107I	GGYRCC	1 cut(s)	80
BsrBI	CCGCTC	1 cut(s)	910
BsrDI	GCAATG	1 cut(s)	1051
BsrI	ACTGG	3 cut(s)	69, 459, 951
BssECI	CCNNGG	4 cut(s)	244, 321, 673, 1081
BssMI	GATC	4 cut(s)	493, 961, 976, 1094
BssT1I	CCWWGG	1 cut(s)	244
Bst2UI	CCWGG	2 cut(s)	323, 675
Bst4CI	ACNGT	4 cut(s)	149, 347, 546, 589
Bst6I	CTCTTC	2 cut(s)	244, 1007
BstAPI	GCANNNNNTGC	1 cut(s)	848
BstC8I	GCNNGC	3 cut(s)	140, 483, 912
BstDEI	CTNAG	2 cut(s)	197, 477
BstDSI	CCRYGG	1 cut(s)	1081
BstF5I	GGATG	7 cut(s)	175, 436, 601, 620, 749, 979, 1072
BstFNI	CGCG	1 cut(s)	1193
BstHHI	GCGC	2 cut(s)	138, 1195
BstKTI	GATC	4 cut(s)	496, 964, 979, 1097
BstMAI	GTCTC	1 cut(s)	168
BstMBI	GATC	4 cut(s)	493, 961, 976, 1094
BstMWI	GCNNNNNNNGC	3 cut(s)	443, 848, 1083
BstNI	CCWGG	2 cut(s)	323, 675
BstNSI	RCATGY	3 cut(s)	136, 665, 838
BstSCI	CCNGG	2 cut(s)	321, 673
BstSFI	CTRYAG	1 cut(s)	849
BstUI	CGCG	1 cut(s)	1193
BstV1I	GCAGC	4 cut(s)	310, 446, 497, 1035
BstV2I	GAAGAC	1 cut(s)	1024
BstX2I	RGATCY	2 cut(s)	961, 1094
BstYI	RGATCY	2 cut(s)	961, 1094
BsuRI	GGCC	5 cut(s)	473, 523, 535, 766, 1086
BtgI	CCRYGG	1 cut(s)	1081
BtrI	CACGTC	2 cut(s)	283, 1022
BtsCI	GGATG	7 cut(s)	175, 436, 601, 620, 749, 979, 1072
BtsIMutI	CAGTG	1 cut(s)	352
BveI	ACCTGC	1 cut(s)	676
Cac8I	GCNNGC	3 cut(s)	140, 483, 912
CaiI	CAGNNNCTG	2 cut(s)	491, 1048
CfoI	GCGC	2 cut(s)	138, 1195
Cfr13I	GGNCC	1 cut(s)	1002
Csp6I	GTAC	1 cut(s)	391
CviAII	CATG	6 cut(s)	133, 567, 662, 789, 835, 1145
CviQI	GTAC	1 cut(s)	391
DdeI	CTNAG	2 cut(s)	197, 477
DpnI	GATC	4 cut(s)	495, 963, 978, 1096
DpnII	GATC	4 cut(s)	493, 961, 976, 1094
EaeI	YGGCCR	1 cut(s)	533
Eam1104I	CTCTTC	2 cut(s)	244, 1007
EarI	CTCTTC	2 cut(s)	244, 1007
Eco130I	CCWWGG	1 cut(s)	244
Eco24I	GRGCYC	1 cut(s)	751
Eco32I	GATATC	1 cut(s)	91
Eco47I	GGWCC	1 cut(s)	1002
Eco57I	CTGAAG	3 cut(s)	936, 1013, 1170
EcoO109I	RGGNCCY	1 cut(s)	1002
EcoRII	CCWGG	2 cut(s)	321, 673
EcoRV	GATATC	1 cut(s)	91
EcoT14I	CCWWGG	1 cut(s)	244
EcoT38I	GRGCYC	1 cut(s)	751
ErhI	CCWWGG	1 cut(s)	244
FaeI	CATG	6 cut(s)	136, 570, 665, 792, 838, 1148
FaiI	YATR	9 cut(s)	134, 178, 180, 568, 663, 790, 836, 1118, 1146
FaqI	GGGAC	2 cut(s)	223, 598
FatI	CATG	6 cut(s)	132, 566, 661, 788, 834, 1144
FbaI	TGATCA	1 cut(s)	493
Fnu4HI	GCNGC	5 cut(s)	299, 435, 486, 869, 1049
FokI	GGATG	7 cut(s)	182, 443, 608, 627, 756, 986, 1079
FriOI	GRGCYC	1 cut(s)	751
Fsp4HI	GCNGC	5 cut(s)	299, 435, 486, 869, 1049
FspBI	CTAG	1 cut(s)	872
GlaI	GCGC	2 cut(s)	137, 1194
GluI	GCNGC	5 cut(s)	299, 435, 486, 869, 1049
GsaI	CCCAGC	1 cut(s)	991
GsuI	CTGGAG	1 cut(s)	476
HaeIII	GGCC	5 cut(s)	473, 523, 535, 766, 1086
HapII	CCGG	3 cut(s)	167, 767, 1098
HhaI	GCGC	2 cut(s)	138, 1195
Hin1II	CATG	6 cut(s)	136, 570, 665, 792, 838, 1148
Hin6I	GCGC	2 cut(s)	136, 1193
HinP1I	GCGC	2 cut(s)	136, 1193
HincII	GTYRAC	1 cut(s)	1141
HindII	GTYRAC	1 cut(s)	1141
HindIII	AAGCTT	2 cut(s)	372, 479
HinfI	GANTC	4 cut(s)	161, 193, 644, 1169
HpaII	CCGG	3 cut(s)	167, 767, 1098
HphI	GGTGA	2 cut(s)	202, 719
Hpy166II	GTNNAC	1 cut(s)	1141
Hpy188I	TCNGA	5 cut(s)	95, 493, 649, 829, 1066
Hpy188III	TCNNGA	7 cut(s)	120, 167, 419, 428, 725, 959, 1042
Hpy8I	GTNNAC	1 cut(s)	1141
Hpy99I	CGWCG	1 cut(s)	1132
HpyAV	CCTTC	5 cut(s)	47, 400, 617, 634, 964
HpyCH4III	ACNGT	4 cut(s)	149, 347, 546, 589
HpyCH4IV	ACGT	3 cut(s)	282, 389, 1021
HpyF10VI	GCNNNNNNNGC	3 cut(s)	443, 848, 1083
HpyF3I	CTNAG	2 cut(s)	197, 477
HpySE526I	ACGT	3 cut(s)	282, 389, 1021
Hsp92II	CATG	6 cut(s)	136, 570, 665, 792, 838, 1148
HspAI	GCGC	2 cut(s)	136, 1193
Kpn2I	TCCGGA	1 cut(s)	166
Ksp22I	TGATCA	1 cut(s)	493
Kzo9I	GATC	4 cut(s)	493, 961, 976, 1094
LmnI	GCTCC	1 cut(s)	323
Lsp1109I	GCAGC	4 cut(s)	310, 446, 497, 1035
LweI	GCATC	3 cut(s)	118, 160, 421
MaeI	CTAG	1 cut(s)	872
MaeII	ACGT	3 cut(s)	282, 389, 1021
MaeIII	GTNAC	2 cut(s)	149, 1025
MalI	GATC	4 cut(s)	495, 963, 978, 1096
MbiI	CCGCTC	1 cut(s)	910
MboI	GATC	4 cut(s)	493, 961, 976, 1094
MfeI	CAATTG	1 cut(s)	525
MflI	RGATCY	2 cut(s)	961, 1094
MhlI	GDGCHC	1 cut(s)	751
MluCI	AATT	6 cut(s)	214, 291, 525, 710, 753, 898
MlyI	GAGTC	1 cut(s)	170
MmeI	TCCRAC	1 cut(s)	39
MroI	TCCGGA	1 cut(s)	166
MroXI	GAANNNNTTC	1 cut(s)	823
MseI	TTAA	4 cut(s)	713, 756, 782, 939
MspA1I	CMGCKG	2 cut(s)	437, 991
MspI	CCGG	3 cut(s)	167, 767, 1098
MspR9I	CCNGG	2 cut(s)	323, 675
MunI	CAATTG	1 cut(s)	525
MvaI	CCWGG	2 cut(s)	323, 675
MvnI	CGCG	1 cut(s)	1193
MwoI	GCNNNNNNNGC	3 cut(s)	443, 848, 1083
NdeII	GATC	4 cut(s)	493, 961, 976, 1094
NlaIII	CATG	6 cut(s)	136, 570, 665, 792, 838, 1148
NlaIV	GGNNCC	4 cut(s)	82, 319, 957, 1096
NmuCI	GTSAC	1 cut(s)	149
NspI	RCATGY	3 cut(s)	136, 665, 838
PaqCI	CACCTGC	1 cut(s)	676
PciI	ACATGT	1 cut(s)	834
PdmI	GAANNNNTTC	1 cut(s)	823
PfeI	GAWTC	3 cut(s)	193, 644, 1169
PkrI	GCNGC	5 cut(s)	300, 436, 487, 870, 1050
PleI	GAGTC	1 cut(s)	169
PpsI	GAGTC	1 cut(s)	169
PpuMI	RGGWCCY	1 cut(s)	1002
PscI	ACATGT	1 cut(s)	834
PshBI	ATTAAT	1 cut(s)	756
Psp5II	RGGWCCY	1 cut(s)	1002
Psp6I	CCWGG	2 cut(s)	321, 673
PspFI	CCCAGC	1 cut(s)	987
PspGI	CCWGG	2 cut(s)	321, 673
PspN4I	GGNNCC	4 cut(s)	82, 319, 957, 1096
PspPI	GGNCC	1 cut(s)	1002
PspPPI	RGGWCCY	1 cut(s)	1002
PstI	CTGCAG	1 cut(s)	853
PstNI	CAGNNNCTG	2 cut(s)	491, 1048
PsuI	RGATCY	2 cut(s)	961, 1094
PvuII	CAGCTG	2 cut(s)	437, 991
RsaI	GTAC	1 cut(s)	392
RsaNI	GTAC	1 cut(s)	391
SaqAI	TTAA	4 cut(s)	713, 756, 782, 939
SatI	GCNGC	5 cut(s)	299, 435, 486, 869, 1049
Sau3AI	GATC	4 cut(s)	493, 961, 976, 1094
Sau96I	GGNCC	1 cut(s)	1002
SchI	GAGTC	1 cut(s)	170
ScrFI	CCNGG	2 cut(s)	323, 675
SduI	GDGCHC	1 cut(s)	751
SfaNI	GCATC	3 cut(s)	118, 160, 421
SfcI	CTRYAG	1 cut(s)	849
SinI	GGWCC	1 cut(s)	1002
SmlI	CTYRAG	2 cut(s)	723, 1006
SmoI	CTYRAG	2 cut(s)	723, 1006
Sse9I	AATT	6 cut(s)	214, 291, 525, 710, 753, 898
SsiI	CCGC	4 cut(s)	296, 869, 908, 1199
SspI	AATATT	1 cut(s)	1160
SspMI	CTAG	1 cut(s)	872
StyD4I	CCNGG	2 cut(s)	321, 673
StyI	CCWWGG	1 cut(s)	244
TaaI	ACNGT	4 cut(s)	149, 347, 546, 589
TaiI	ACGT	3 cut(s)	285, 392, 1024
TaqII	GACCGA	1 cut(s)	168
TasI	AATT	6 cut(s)	214, 291, 525, 710, 753, 898
TauI	GCSGC	1 cut(s)	871
TfiI	GAWTC	3 cut(s)	193, 644, 1169
Tru1I	TTAA	4 cut(s)	713, 756, 782, 939
Tru9I	TTAA	4 cut(s)	713, 756, 782, 939
TscAI	CASTG	1 cut(s)	352
TseFI	GTSAC	1 cut(s)	149
TseI	GCWGC	4 cut(s)	298, 434, 485, 1048
Tsp45I	GTSAC	1 cut(s)	149
TspDTI	ATGAA	5 cut(s)	66, 456, 555, 945, 1113
TspGWI	ACGGA	1 cut(s)	1044
TspRI	CASTG	1 cut(s)	352
VpaK11BI	GGWCC	1 cut(s)	1002
VspI	ATTAAT	1 cut(s)	756
XapI	RAATTY	1 cut(s)	291
XceI	RCATGY	3 cut(s)	136, 665, 838
XcmI	CCANNNNNNNNNTGG	1 cut(s)	311
XmnI	GAANNNNTTC	1 cut(s)	823
XspI	CTAG	1 cut(s)	872

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.