Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0002343

Physical Location & Seq

Genomic Coordinates Forward (+)

51129088 .. 51135441

Gene Structure 6354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG349200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1755 bp

ATGTTGGATGGTAAAGATGCTGGCGAGGTGGATATTGAACTTTTGAAGGTTACTCACTTACGGAAGATGGGCCGCTATACTACAGAGTTTATGTGGTTAGGTTCTCCTTTAAAGGGAAGGAAAAAACGGAGGCATTACCAATCATTCAGCCGTAATGGAGTTATAGTTTCTGTTCATGACTTTGTATTTGTTTTAGCAGAGGAGGATAAGCGTCTTGTTGCGTACTTAGAAGATATGTACGAGGACTCTAAGGGTAACAAGATGGTTGTTGTTCGCTGGTTTCACAAAGTTGATGAGGTTGGTATGGTCTTGCCTCTCAATTTTAATGACAGAGAGATTTTCTTTTCTCTCTGTCACCAACATCTCAGTATTGAATGCATTGATGGATTGGCTACTGTCCTCAGCCCTGTGCATTTTGAGAAATTTCTGAAAGAGGCGAAGCAAACACAGCTGGAACCCTTTGTATGTCATAAACAGTTTGAAAATGATGATGTAAGGCCCTTCGACATTACTCAAGTTGAAGGTTATTGGAAACAGGAGATACTTAGATACATGCACACAGTTACCCCTTCAAAGGTTCCCGTCAGTTCTCAACAATCTGTTGATGAGTTGAAAGCGGAAGAAGTTGCTCATGCCAGTGATATCAGACCTAAAAAGAGGCAGCGTTCTTTAAAAGATGATGATATGCATGTTGAAGGTATTGAAAGATGGGTGTCACTGGGTGCAGCATGTGGGGAAGCAGGCTATATAAGTAAAAATGTGACTGATTGTAAAAGTGAAGCCTTCAGCCTTGGTAAGAGAGGTTCTGCTGTTATTTTACCTTGTCCAGATGTGAAACAAATCCTGCTGCAGTATCTAGCAGTAGGTTCCCAGGTTGAGGTCCTGTCCCAAGATAGTGGCATTAGAGGGTGTTGGTTTAGAGCATTGATTATCAAGAAGCATAAAGATAAAGTTAAGGTGCAATATCAAGATATTCAGGATGCAGCTGATGAAGCTAACAAACTTGAGGAATGGATTTTAGCGTCAAAGATTGCGGCTCCTGATCAATTGGGGCTTCGGCTTTCTGATAGGCCAAGTATTCGGCCATGTATAAAGTCAAATAAAGGTAGAGTTTCATGGTCTGTTGATGTTGGGAGTGTTGTTGATGTCTGGAGGCATGATGGTTGGTGGGAAGGCATAGTACTTCAGAAGGACTGTGATGACAGACTTCACGTATACTTCCCAGGAGAGAATCAGGTTTTGATTGTGGGGCGTAGTGAAGTGCGACATTCTCAAGAGTGGCTGGGGAGAGAGTGGGCTTATATAAAGGACAGGCCAGACCTTGTGGCCTCAATATCAAGTAATTTAGAAACTAAGAAAACTGTTGGAAACTCATTTGATGGCGTGTCAGGGCTGTCTGAAATCATTGATAGCAGAGAGTTGAAGAAACATGAAACATCTGCTCTTTCCTCTGATAATGACAAGGATGAAAAAGTAAATGAAGTCGATAAGGTTCCAGATCTTTTGAAGGATGATCTCTTTGCCCAGCTGAAGTGGAAGTCTTCGAGGAAGAGAAGACGTGGTAATGGAAGCTCTGCCCAAAAGTTGCATTTTGGTAGTGATGGTAAAAGCACCTCTGGCCTCGTGGGATCCAAATCTTGTGAAAGATATTTGATTCCATCGTCTCTCATGGTTGACCACGAGAACTGCAAATATTTAGGGGATTCTCTTTTCAGTTCATCAGTTGCGCCTTCTCTAACAAGCTTAGTTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Agenet BAH

Protein Analysis

584

Amino Acids

66.23

Weight (kDa)

6.67

Isoelectric Point (pI)

47.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BAH	PF01426	56 - 163	5.2e-10	BAH domain
Agenet	PF05641	289 - 363	5.5e-18	Agenet domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002343)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68580 AT1G68580 AT1G68580 AT1G68580 AT1G68580
fragaria_vesca	FvH4_4g27610 FvH4_4g27610 FvH4_4g27610 FvH4_4g27610 FvH4_4g27610 FvH4_4g27610 FvH4_4g27610 FvH4_4g27610
malus_domestica	MD13G1043500.v1.1 MD16G1044300.v1.1
prunus_persica	Prupe.1G309000_v2.0.a1 Prupe.1G309000_v2.0.a1 Prupe.1G309000_v2.0.a1
pyrus_communis	pycom13g03830 pycom16g03850
rosa_chinensis	RchiOBHm_Chr3g0482621 RchiOBHm_Chr3g0482631 RchiOBHm_Chr3g0482641 RchiOBHm_Chr4g0435461
rosa_laevigata	RLG00000006591
rosa_multiflora	Rmu_sc0006069.1_g000002 Rmu_sc0015893.1_g000006 Rmu_sc0015893.1_g000007
rosa_roxburghii	Rroxscaffold_3G00234330 Rroxscaffold_5G00376690
rosa_rugosa	Rorug04G0285200
rosa_samantha	Rh3AG248900 Rh3CG281900 Rh3CG282000 Rh3CG282100 Rh3DG278100 Rh4AG340900 Rh4BG349200 Rh4CG363700 Rh4DG343400
rosa_wichuraiana	Rw3G022470 Rw4G029730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1215
AciI	CCGC	3 cut(s)	73, 617, 1034
AclWI	GGATC	2 cut(s)	1623, 1636
AcoI	YGGCCR	1 cut(s)	1082
AcsI	RAATTY	1 cut(s)	422
AcuI	CTGAAG	3 cut(s)	769, 1169, 1550
AdeI	CACNNNGTG	1 cut(s)	722
AfaI	GTAC	3 cut(s)	224, 239, 1182
AfiI	CCNNNNNNNGG	3 cut(s)	113, 574, 877
AjiI	CACGTC	1 cut(s)	1559
AjnI	CCWGG	2 cut(s)	870, 1222
AluBI	AGCT	6 cut(s)	451, 986, 995, 1528, 1572, 1743
AluI	AGCT	6 cut(s)	451, 986, 995, 1528, 1572, 1743
Alw26I	GTCTC	1 cut(s)	1668
AlwI	GGATC	2 cut(s)	1623, 1636
AoxI	GGCC	7 cut(s)	70, 497, 1070, 1082, 1313, 1326, 1618
ApeKI	GCWGC	4 cut(s)	661, 725, 847, 983
ApoI	RAATTY	1 cut(s)	422
ArsI	GACNNNNNNTTYG	2 cut(s)	170, 202
AspLEI	GCGC	1 cut(s)	1729
AspS9I	GGNCC	3 cut(s)	70, 498, 880
AsuHPI	GGTGA	1 cut(s)	347
AvaII	GGWCC	1 cut(s)	880
BamHI	GGATCC	1 cut(s)	1628
BarI	GAAGNNNNNNTAC	2 cut(s)	1164, 1196
BauI	CACGAG	2 cut(s)	1622, 1679
BbsI	GAAGAC	2 cut(s)	1533, 1561
BbvCI	CCTCAGC	1 cut(s)	401
BbvI	GCAGC	4 cut(s)	673, 737, 834, 995
BccI	CCATC	9 cut(s)	2, 61, 256, 377, 702, 1154, 1373, 1595, 1666
BceAI	ACGGC	1 cut(s)	135
BciT130I	CCWGG	2 cut(s)	872, 1224
BclI	TGATCA	1 cut(s)	1042
BcoDI	GTCTC	1 cut(s)	1668
BfaI	CTAG	1 cut(s)	857
BfmI	CTRYAG	2 cut(s)	81, 848
BglII	AGATCT	1 cut(s)	1498
BisI	GCNGC	6 cut(s)	73, 662, 726, 848, 984, 1035
BlsI	GCNGC	6 cut(s)	74, 663, 727, 849, 985, 1036
BmcAI	AGTACT	1 cut(s)	1182
Bme1390I	CCNGG	2 cut(s)	872, 1224
Bme18I	GGWCC	1 cut(s)	880
BmgBI	CACGTC	1 cut(s)	1559
BmgT120I	GGNCC	3 cut(s)	70, 498, 880
BmiI	GGNNCC	6 cut(s)	456, 579, 868, 1038, 1494, 1630
BmrFI	CCNGG	2 cut(s)	872, 1224
BmrI	ACTGGG	1 cut(s)	728
BmsI	GCATC	2 cut(s)	7, 970
BmuI	ACTGGG	1 cut(s)	728
BpiI	GAAGAC	2 cut(s)	1533, 1561
BpmI	CTGGAG	1 cut(s)	1171
Bpu10I	CCTNAGC	1 cut(s)	401
BpuEI	CTTGAG	3 cut(s)	498, 1025, 1257
BsaAI	YACGTR	1 cut(s)	1213
BsaBI	GATNNNNATC	1 cut(s)	1633
BsaJI	CCNNGG	3 cut(s)	790, 870, 1222
BsaXI	ACNNNNNCTCC	2 cut(s)	150, 180
Bsc4I	CCNNNNNNNGG	3 cut(s)	113, 574, 877
Bse1I	ACTGG	2 cut(s)	636, 723
Bse8I	GATNNNNATC	1 cut(s)	1633
BseBI	CCWGG	2 cut(s)	872, 1224
BseDI	CCNNGG	3 cut(s)	790, 870, 1222
BseGI	GGATG	4 cut(s)	13, 985, 1471, 1516
BseJI	GATNNNNATC	1 cut(s)	1633
BseLI	CCNNNNNNNGG	3 cut(s)	113, 574, 877
BseMII	CTCAG	2 cut(s)	379, 415
BseNI	ACTGG	2 cut(s)	636, 723
BseRI	GAGGAG	1 cut(s)	215
BseXI	GCAGC	4 cut(s)	673, 737, 834, 995
BseYI	CCCAGC	2 cut(s)	1282, 1524
BsgI	GTGCAG	1 cut(s)	744
BshFI	GGCC	7 cut(s)	72, 499, 1072, 1084, 1315, 1328, 1620
BslFI	GGGAC	1 cut(s)	871
BslI	CCNNNNNNNGG	3 cut(s)	113, 574, 877
BsmAI	GTCTC	1 cut(s)	1668
BsmBI	CGTCTC	1 cut(s)	1668
BsmFI	GGGAC	1 cut(s)	871
BsmI	GAATGC	1 cut(s)	380
BsnI	GGCC	7 cut(s)	72, 499, 1072, 1084, 1315, 1328, 1620
Bsp143I	GATC	4 cut(s)	1042, 1498, 1513, 1628
BspACI	CCGC	3 cut(s)	73, 617, 1034
BspANI	GGCC	7 cut(s)	72, 499, 1072, 1084, 1315, 1328, 1620
BspCNI	CTCAG	2 cut(s)	378, 414
BspHI	TCATGA	1 cut(s)	175
BspLI	GGNNCC	6 cut(s)	456, 579, 868, 1038, 1494, 1630
BspMAI	CTGCAG	1 cut(s)	852
BspPI	GGATC	2 cut(s)	1623, 1636
BsrI	ACTGG	2 cut(s)	636, 723
BssECI	CCNNGG	3 cut(s)	790, 870, 1222
BssMI	GATC	4 cut(s)	1042, 1498, 1513, 1628
BssNAI	GTATAC	1 cut(s)	1216
BssSI	CACGAG	2 cut(s)	1622, 1679
BssT1I	CCWWGG	1 cut(s)	790
Bst1107I	GTATAC	1 cut(s)	1216
Bst2BI	CACGAG	2 cut(s)	1622, 1679
Bst2UI	CCWGG	2 cut(s)	872, 1224
Bst4CI	ACNGT	5 cut(s)	397, 477, 562, 1196, 1363
Bst6I	CTCTTC	1 cut(s)	1544
BstBAI	YACGTR	1 cut(s)	1213
BstC8I	GCNNGC	2 cut(s)	22, 742
BstDEI	CTNAG	7 cut(s)	226, 249, 365, 401, 545, 1353, 1744
BstF5I	GGATG	4 cut(s)	13, 985, 1471, 1516
BstHHI	GCGC	1 cut(s)	1729
BstKTI	GATC	4 cut(s)	1045, 1501, 1516, 1631
BstMAI	GTCTC	1 cut(s)	1668
BstMBI	GATC	4 cut(s)	1042, 1498, 1513, 1628
BstMWI	GCNNNNNNNGC	3 cut(s)	448, 992, 1617
BstNI	CCWGG	2 cut(s)	872, 1224
BstNSI	RCATGY	3 cut(s)	556, 692, 732
BstSCI	CCNGG	2 cut(s)	870, 1222
BstSFI	CTRYAG	2 cut(s)	81, 848
BstV1I	GCAGC	4 cut(s)	673, 737, 834, 995
BstV2I	GAAGAC	2 cut(s)	1533, 1561
BstX2I	RGATCY	2 cut(s)	1498, 1628
BstXI	CCANNNNNNTGG	1 cut(s)	896
BstYI	RGATCY	2 cut(s)	1498, 1628
BstZ17I	GTATAC	1 cut(s)	1216
BsuRI	GGCC	7 cut(s)	72, 499, 1072, 1084, 1315, 1328, 1620
BtrI	CACGTC	1 cut(s)	1559
BtsCI	GGATG	4 cut(s)	13, 985, 1471, 1516
BtsIMutI	CAGTG	2 cut(s)	643, 716
Cac8I	GCNNGC	2 cut(s)	22, 742
CciI	TCATGA	1 cut(s)	175
CfoI	GCGC	1 cut(s)	1729
Cfr13I	GGNCC	3 cut(s)	70, 498, 880
CseI	GACGC	2 cut(s)	200, 1011
Csp6I	GTAC	3 cut(s)	223, 238, 1181
CviQI	GTAC	3 cut(s)	223, 238, 1181
DdeI	CTNAG	7 cut(s)	226, 249, 365, 401, 545, 1353, 1744
DpnI	GATC	4 cut(s)	1044, 1500, 1515, 1630
DpnII	GATC	4 cut(s)	1042, 1498, 1513, 1628
DraI	TTTAAA	2 cut(s)	111, 672
DraIII	CACNNNGTG	1 cut(s)	722
EaeI	YGGCCR	1 cut(s)	1082
Eam1104I	CTCTTC	1 cut(s)	1544
EarI	CTCTTC	1 cut(s)	1544
Eco130I	CCWWGG	1 cut(s)	790
Eco32I	GATATC	1 cut(s)	643
Eco47I	GGWCC	1 cut(s)	880
Eco57I	CTGAAG	3 cut(s)	769, 1169, 1550
EcoO109I	RGGNCCY	2 cut(s)	498, 880
EcoRII	CCWGG	2 cut(s)	870, 1222
EcoRV	GATATC	1 cut(s)	643
EcoT14I	CCWWGG	1 cut(s)	790
EcoT22I	ATGCAT	2 cut(s)	380, 690
ErhI	CCWWGG	1 cut(s)	790
Esp3I	CGTCTC	1 cut(s)	1668
FaqI	GGGAC	1 cut(s)	871
FbaI	TGATCA	1 cut(s)	1042
FblI	GTMKAC	1 cut(s)	1215
Fnu4HI	GCNGC	6 cut(s)	73, 662, 726, 848, 984, 1035
FokI	GGATG	4 cut(s)	20, 992, 1478, 1523
Fsp4HI	GCNGC	6 cut(s)	73, 662, 726, 848, 984, 1035
FspBI	CTAG	1 cut(s)	857
GlaI	GCGC	1 cut(s)	1728
GluI	GCNGC	6 cut(s)	73, 662, 726, 848, 984, 1035
GsaI	CCCAGC	2 cut(s)	1286, 1528
GsuI	CTGGAG	1 cut(s)	1171
HaeIII	GGCC	7 cut(s)	72, 499, 1072, 1084, 1315, 1328, 1620
HgaI	GACGC	2 cut(s)	200, 1011
HhaI	GCGC	1 cut(s)	1729
Hin6I	GCGC	1 cut(s)	1727
HinP1I	GCGC	1 cut(s)	1727
HincII	GTYRAC	1 cut(s)	1675
HindII	GTYRAC	1 cut(s)	1675
HindIII	AAGCTT	1 cut(s)	1741
HinfI	GANTC	4 cut(s)	245, 1231, 1654, 1703
HphI	GGTGA	1 cut(s)	347
Hpy166II	GTNNAC	2 cut(s)	1216, 1675
Hpy188I	TCNGA	6 cut(s)	429, 647, 1066, 1188, 1399, 1453
Hpy188III	TCNNGA	9 cut(s)	176, 827, 934, 968, 977, 1040, 1150, 1274, 1496
Hpy8I	GTNNAC	2 cut(s)	1216, 1675
HpyCH4III	ACNGT	5 cut(s)	397, 477, 562, 1196, 1363
HpyCH4IV	ACGT	2 cut(s)	1212, 1558
HpyF10VI	GCNNNNNNNGC	3 cut(s)	448, 992, 1617
HpyF3I	CTNAG	7 cut(s)	226, 249, 365, 401, 545, 1353, 1744
HpySE526I	ACGT	2 cut(s)	1212, 1558
HspAI	GCGC	1 cut(s)	1727
Ksp22I	TGATCA	1 cut(s)	1042
Kzo9I	GATC	4 cut(s)	1042, 1498, 1513, 1628
LmnI	GCTCC	1 cut(s)	1042
Lsp1109I	GCAGC	4 cut(s)	673, 737, 834, 995
LweI	GCATC	2 cut(s)	7, 970
MaeI	CTAG	1 cut(s)	857
MaeII	ACGT	2 cut(s)	1212, 1558
MaeIII	GTNAC	6 cut(s)	49, 254, 353, 562, 714, 760
MalI	GATC	4 cut(s)	1044, 1500, 1515, 1630
MboI	GATC	4 cut(s)	1042, 1498, 1513, 1628
MboII	GAAGA	7 cut(s)	76, 242, 632, 1435, 1533, 1561, 1566
MfeI	CAATTG	1 cut(s)	1046
MflI	RGATCY	2 cut(s)	1498, 1628
MluCI	AATT	4 cut(s)	319, 422, 1046, 1342
MlyI	GAGTC	1 cut(s)	239
MmeI	TCCRAC	1 cut(s)	1345
Mph1103I	ATGCAT	2 cut(s)	380, 690
MseI	TTAA	4 cut(s)	110, 324, 671, 954
MslI	CAYNNNNRTG	1 cut(s)	636
MspA1I	CMGCKG	3 cut(s)	451, 986, 1528
MspR9I	CCNGG	2 cut(s)	872, 1224
MunI	CAATTG	1 cut(s)	1046
Mva1269I	GAATGC	1 cut(s)	380
MvaI	CCWGG	2 cut(s)	872, 1224
MwoI	GCNNNNNNNGC	3 cut(s)	448, 992, 1617
NdeII	GATC	4 cut(s)	1042, 1498, 1513, 1628
NlaIV	GGNNCC	6 cut(s)	456, 579, 868, 1038, 1494, 1630
NmuCI	GTSAC	3 cut(s)	353, 714, 760
NsiI	ATGCAT	2 cut(s)	380, 690
NspI	RCATGY	3 cut(s)	556, 692, 732
PagI	TCATGA	1 cut(s)	175
PctI	GAATGC	1 cut(s)	380
PfeI	GAWTC	3 cut(s)	1231, 1654, 1703
PkrI	GCNGC	6 cut(s)	74, 663, 727, 849, 985, 1036
PleI	GAGTC	1 cut(s)	239
PpsI	GAGTC	1 cut(s)	239
Ppu21I	YACGTR	1 cut(s)	1213
PpuMI	RGGWCCY	1 cut(s)	880
Psp5II	RGGWCCY	1 cut(s)	880
Psp6I	CCWGG	2 cut(s)	870, 1222
PspFI	CCCAGC	2 cut(s)	1282, 1524
PspGI	CCWGG	2 cut(s)	870, 1222
PspN4I	GGNNCC	6 cut(s)	456, 579, 868, 1038, 1494, 1630
PspPI	GGNCC	3 cut(s)	70, 498, 880
PspPPI	RGGWCCY	1 cut(s)	880
PsrI	GAACNNNNNNTAC	2 cut(s)	787, 819
PstI	CTGCAG	1 cut(s)	852
PsuI	RGATCY	2 cut(s)	1498, 1628
PvuII	CAGCTG	3 cut(s)	451, 986, 1528
RsaI	GTAC	3 cut(s)	224, 239, 1182
RsaNI	GTAC	3 cut(s)	223, 238, 1181
RseI	CAYNNNNRTG	1 cut(s)	636
SaqAI	TTAA	4 cut(s)	110, 324, 671, 954
SatI	GCNGC	6 cut(s)	73, 662, 726, 848, 984, 1035
Sau3AI	GATC	4 cut(s)	1042, 1498, 1513, 1628
Sau96I	GGNCC	3 cut(s)	70, 498, 880
ScaI	AGTACT	1 cut(s)	1182
SchI	GAGTC	1 cut(s)	239
ScrFI	CCNGG	2 cut(s)	872, 1224
SfaNI	GCATC	2 cut(s)	7, 970
SfcI	CTRYAG	2 cut(s)	81, 848
SinI	GGWCC	1 cut(s)	880
SmiMI	CAYNNNNRTG	1 cut(s)	636
SmlI	CTYRAG	3 cut(s)	513, 1004, 1272
SmoI	CTYRAG	3 cut(s)	513, 1004, 1272
Sse9I	AATT	4 cut(s)	319, 422, 1046, 1342
SsiI	CCGC	3 cut(s)	73, 617, 1034
SspI	AATATT	1 cut(s)	1694
SspMI	CTAG	1 cut(s)	857
StyD4I	CCNGG	2 cut(s)	870, 1222
StyI	CCWWGG	1 cut(s)	790
TaaI	ACNGT	5 cut(s)	397, 477, 562, 1196, 1363
TaiI	ACGT	2 cut(s)	1215, 1561
TaqI	TCGA	3 cut(s)	504, 1485, 1544
TasI	AATT	4 cut(s)	319, 422, 1046, 1342
TatI	WGTACW	1 cut(s)	1180
TauI	GCSGC	2 cut(s)	75, 1037
TfiI	GAWTC	3 cut(s)	1231, 1654, 1703
Tru1I	TTAA	4 cut(s)	110, 324, 671, 954
Tru9I	TTAA	4 cut(s)	110, 324, 671, 954
TscAI	CASTG	2 cut(s)	643, 723
TseFI	GTSAC	3 cut(s)	353, 714, 760
TseI	GCWGC	4 cut(s)	661, 725, 847, 983
Tsp45I	GTSAC	3 cut(s)	353, 714, 760
TspDTI	ATGAA	7 cut(s)	164, 1005, 1104, 1446, 1482, 1494, 1707
TspGWI	ACGGA	2 cut(s)	76, 142
TspRI	CASTG	2 cut(s)	643, 723
VpaK11BI	GGWCC	1 cut(s)	880
XapI	RAATTY	1 cut(s)	422
XceI	RCATGY	3 cut(s)	556, 692, 732
XmiI	GTMKAC	1 cut(s)	1215
XspI	CTAG	1 cut(s)	857
ZrmI	AGTACT	1 cut(s)	1182
Zsp2I	ATGCAT	2 cut(s)	380, 690

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.