Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0002343

Physical Location & Seq

Genomic Coordinates Forward (+)

56591789 .. 56595478

Gene Structure 3690 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG343400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2076 bp

ATGGAGAGATTGGCGGAGGCGGCCACCACGGCGGCGCTGGGGTTCGTGAGGTGGGAGGAGGTGTTTGTGTCCTCCGATAAGGGGCGGAGAGAGGTTCATTACTATCTGAAGCGGAGCGACGGGTGCTCAGATCTGGCTGTGATAGGGAAAGAGAAGAGCTTGAGGCACATGTCCTATCACTATGCCTTTCGAAACCGGTCTTTGTTCCCGGCGTCTTCGCTGGTTAAGCTCAAGTCGCGTAGAGAGGTCGTCGATTGGCTCAAGTCTGTGGTTTCAGATGTCCTGCCTCGAGTACCATCTGGTTTAGATGGAAGCATGTTGGATGGTAAAGATGCTGGCGAGGTGGATATTGAACTTTTGAAGGTTACTCACTTACGGAAGATGGGCCGCTATACTACAGAGTTTATGTGGTTAGGTTCTCCTTTAAAGGGAAGGAAAAAACGGAGGCATTACCAATCGTTCAGCCGTAATGGAGTTATAGTTTCTGTTCATGACTTTGTATTTGTTTTAGCAGAGGAGGATAAGCGTCTTGTTGCGTACTTAGAAGATATGTACGAGGACTCTAAGGGTAACAAGATGGTTGTTGTTCGCTGGTTTCACAAAGTTGATGAGGTTGGTATGGTCTTGCCTCTCAATTTTAATGACAGAGAGATTTTCTTTTCTCTCTGTCACCAACATCTCAGTATTGAATGCATTGATGGATTGGCTACTGTCCTCAGCCCTGTGCACTTTGAGAAATTTCTGAAAGAGGCGAAGCAAACACAGCTGGAACCCTTTGTATGTCATAAACAGTTTGAAAATGATGATGTAAAGCCCTTCGACATTACTCAAGTTGAAGGTTATTGGAAACAGGAGATACTTAGATACATGCACACAGTTACCCCTTCAAAGGTTCCTGTCAGTTCTCAACAATCTGTTGATGAGTTGAAAGCGGAAGAAGTTGCTCGTGCCAGTGATATCAGACCTAAAAAGAGGCAGCGTTCTTTAAAAGATGATGATATGCATGTTGAAGGTATTGAAAGAAGGGTGTCACTGGGTGCAGCATGTGGGGAAGCAGGCTATATAAGTGAAAATGGGACTGATTGTAAAAGTAAAAGCGAAGCCTTCAGCCTTGGTAAGAGAGGTTCTACTGTTATTTTACCTTGTCCAGAGGTGAAACAAATCCTGCCGCAGTATCTAGCAGTAGGTTCCCAGGTTGAGGTCCTGTCCCAAGATAGTGGCATTAGAGGGTGTTGGTTTAGAGCATTGATTATCAAGAAGCATAAAGATAAAGTTAAGGTGCAATATCAAGATATTCAGGATGCAGCTGATGAAGCTAACAAACTTGAGGAATGGATTTTTGCGTCAAAGATTGCAGCTCCTGATCAATTGGGACTTCGGCTTTCTGATAGGCCAAGTATTCGGCCATGTATAAAGTCAAATAAAGGTAGAGTTTCATGGTCTGTTGGTGTTGGGAGTGTTGTTGATGTCTGGAGGCATGATGGTTGGTGGGAAGGCATAGTACTTCAAAAGGAATGTGATGACAGACTTCACGTATATTTCCCAGGAGAGAATCAGGTTTTGATTGCGGGGTGTAGTGAAGTGCGACATTCTCAAGAGTGGCTGGGAAGAGAGTGGGCTTATATAAAGGACAGGCCAGACCTTGTGGCCTCAATATCAAGTAATTTAGAAACTAAGAAAACTGTTGGAAACTCATTTGATGGCATGTCAGGGCTGTCTGAAATCATTGATAGCAGAGAGTTGAAGAAACATGAAACATCTGCTCTTTCCTCTGATAATGACAAGGATGAAAAAGTAAATGAAGTCGACAAAGTTCCAGATCTTTTGAAGGATGATCTCTTTGCCCAGCTGAAGTGGAAGTCTTCGAGGAAGAGAAGACGTGGTAATGGAAGCTCTGCCCAAAAGTTGCATTTTGGTAGTGATGGTAAAAGCACCTCTGGCCTCATGGGATCCAAATCTTGTGAAAGATATTTGATTCCATCGTCTCTCATGGTTGACCACGAGAACTGCAAATATTTAGGGGATTCTCTTTTCAGTTCATCAGTTGCGCCTTCTCTAACAAGCTTAGTTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Agenet BAH

Protein Analysis

691

Amino Acids

78.25

Weight (kDa)

8.07

Isoelectric Point (pI)

51.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BAH	PF01426	161 - 269	5.6e-10	BAH domain
Agenet	PF05641	396 - 470	1.6e-17	Agenet domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002343)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68580 AT1G68580 AT1G68580 AT1G68580 AT1G68580
fragaria_vesca	FvH4_4g27610 FvH4_4g27610 FvH4_4g27610 FvH4_4g27610 FvH4_4g27610 FvH4_4g27610 FvH4_4g27610 FvH4_4g27610
malus_domestica	MD13G1043500.v1.1 MD16G1044300.v1.1
prunus_persica	Prupe.1G309000_v2.0.a1 Prupe.1G309000_v2.0.a1 Prupe.1G309000_v2.0.a1
pyrus_communis	pycom13g03830 pycom16g03850
rosa_chinensis	RchiOBHm_Chr3g0482621 RchiOBHm_Chr3g0482631 RchiOBHm_Chr3g0482641 RchiOBHm_Chr4g0435461
rosa_laevigata	RLG00000006591
rosa_multiflora	Rmu_sc0006069.1_g000002 Rmu_sc0015893.1_g000006 Rmu_sc0015893.1_g000007
rosa_roxburghii	Rroxscaffold_3G00234330 Rroxscaffold_5G00376690
rosa_rugosa	Rorug04G0285200
rosa_samantha	Rh3AG248900 Rh3CG281900 Rh3CG282000 Rh3CG282100 Rh3DG278100 Rh4AG340900 Rh4BG349200 Rh4CG363700 Rh4DG343400
rosa_wichuraiana	Rw3G022470 Rw4G029730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1806
AccII	CGCG	1 cut(s)	238
AciI	CCGC	9 cut(s)	14, 20, 32, 85, 112, 388, 932, 1169, 1568
AclWI	GGATC	2 cut(s)	1944, 1957
AcoI	YGGCCR	2 cut(s)	21, 1403
AcsI	RAATTY	1 cut(s)	737
AcuI	CTGAAG	3 cut(s)	128, 1090, 1871
AcyI	GRCGYC	1 cut(s)	212
AdeI	CACNNNGTG	1 cut(s)	1037
AfaI	GTAC	4 cut(s)	294, 539, 554, 1503
AfiI	CCNNNNNNNGG	4 cut(s)	81, 428, 889, 1198
AflIII	ACRYGT	1 cut(s)	168
AgeI	ACCGGT	1 cut(s)	195
AjiI	CACGTC	1 cut(s)	1880
AjnI	CCWGG	2 cut(s)	1191, 1543
AluBI	AGCT	9 cut(s)	159, 229, 766, 1307, 1316, 1358, 1849, 1893, 2064
AluI	AGCT	9 cut(s)	159, 229, 766, 1307, 1316, 1358, 1849, 1893, 2064
Alw21I	GWGCWC	2 cut(s)	128, 729
Alw26I	GTCTC	1 cut(s)	1989
Alw44I	GTGCAC	1 cut(s)	725
AlwI	GGATC	2 cut(s)	1944, 1957
AlwNI	CAGNNNCTG	1 cut(s)	1361
Ama87I	CYCGRG	1 cut(s)	288
AoxI	GGCC	7 cut(s)	21, 385, 1391, 1403, 1634, 1647, 1939
ApaLI	GTGCAC	1 cut(s)	725
ApeKI	GCWGC	4 cut(s)	976, 1040, 1304, 1355
ApoI	RAATTY	1 cut(s)	737
ArsI	GACNNNNNNTTYG	2 cut(s)	485, 517
AsiGI	ACCGGT	1 cut(s)	195
AspLEI	GCGC	2 cut(s)	37, 2050
AspS9I	GGNCC	2 cut(s)	385, 1201
AsuC2I	CCSGG	1 cut(s)	209
AsuHPI	GGTGA	2 cut(s)	662, 1165
AsuII	TTCGAA	1 cut(s)	190
AvaI	CYCGRG	1 cut(s)	288
AvaII	GGWCC	1 cut(s)	1201
BaeGI	GKGCMC	1 cut(s)	729
BamHI	GGATCC	1 cut(s)	1949
BarI	GAAGNNNNNNTAC	2 cut(s)	1485, 1517
BauI	CACGAG	2 cut(s)	945, 2000
BbsI	GAAGAC	3 cut(s)	207, 1854, 1882
Bbv12I	GWGCWC	2 cut(s)	128, 729
BbvCI	CCTCAGC	1 cut(s)	716
BbvI	GCAGC	4 cut(s)	988, 1052, 1316, 1367
BceAI	ACGGC	2 cut(s)	45, 450
BciT130I	CCWGG	2 cut(s)	1193, 1545
BclI	TGATCA	1 cut(s)	1363
BcnI	CCSGG	1 cut(s)	209
BcoDI	GTCTC	1 cut(s)	1989
BfaI	CTAG	1 cut(s)	1178
BfmI	CTRYAG	1 cut(s)	396
BfoI	RGCGCY	1 cut(s)	38
BglI	GCCNNNNNGGC	1 cut(s)	29
BglII	AGATCT	2 cut(s)	130, 1819
BisI	GCNGC	8 cut(s)	21, 33, 388, 977, 1041, 1169, 1305, 1356
BlsI	GCNGC	8 cut(s)	22, 34, 389, 978, 1042, 1170, 1306, 1357
BmcAI	AGTACT	1 cut(s)	1503
Bme1390I	CCNGG	3 cut(s)	209, 1193, 1545
Bme18I	GGWCC	1 cut(s)	1201
BmeT110I	CYCGRG	1 cut(s)	288
BmgBI	CACGTC	1 cut(s)	1880
BmgT120I	GGNCC	2 cut(s)	385, 1201
BmiI	GGNNCC	4 cut(s)	771, 894, 1189, 1951
BmrFI	CCNGG	3 cut(s)	209, 1193, 1545
BmrI	ACTGGG	1 cut(s)	1043
BmsI	GCATC	2 cut(s)	322, 1291
BmuI	ACTGGG	1 cut(s)	1043
BpiI	GAAGAC	3 cut(s)	207, 1854, 1882
BpmI	CTGGAG	1 cut(s)	1492
Bpu10I	CCTNAGC	1 cut(s)	716
Bpu14I	TTCGAA	1 cut(s)	190
BpuEI	CTTGAG	6 cut(s)	181, 215, 245, 813, 1346, 1578
BpuMI	CCSGG	1 cut(s)	209
BsaAI	YACGTR	1 cut(s)	1534
BsaBI	GATNNNNATC	1 cut(s)	1954
BsaHI	GRCGYC	1 cut(s)	212
BsaJI	CCNNGG	4 cut(s)	27, 1111, 1191, 1543
BsaWI	WCCGGW	1 cut(s)	195
BsaXI	ACNNNNNCTCC	4 cut(s)	47, 77, 465, 495
Bsc4I	CCNNNNNNNGG	4 cut(s)	81, 428, 889, 1198
Bse118I	RCCGGY	1 cut(s)	195
Bse1I	ACTGG	2 cut(s)	951, 1038
Bse8I	GATNNNNATC	1 cut(s)	1954
BseBI	CCWGG	2 cut(s)	1193, 1545
BseDI	CCNNGG	4 cut(s)	27, 1111, 1191, 1543
BseGI	GGATG	4 cut(s)	328, 1306, 1792, 1837
BseJI	GATNNNNATC	1 cut(s)	1954
BseLI	CCNNNNNNNGG	4 cut(s)	81, 428, 889, 1198
BseMII	CTCAG	3 cut(s)	141, 694, 730
BseNI	ACTGG	2 cut(s)	951, 1038
BseRI	GAGGAG	2 cut(s)	71, 530
BseSI	GKGCMC	1 cut(s)	729
BseXI	GCAGC	4 cut(s)	988, 1052, 1316, 1367
BseYI	CCCAGC	3 cut(s)	37, 1603, 1845
BsgI	GTGCAG	1 cut(s)	1059
Bsh1236I	CGCG	1 cut(s)	238
BshFI	GGCC	7 cut(s)	23, 387, 1393, 1405, 1636, 1649, 1941
BshTI	ACCGGT	1 cut(s)	195
BsiHKAI	GWGCWC	2 cut(s)	128, 729
BsiHKCI	CYCGRG	1 cut(s)	288
BsiSI	CCGG	2 cut(s)	196, 209
BslFI	GGGAC	3 cut(s)	1090, 1192, 1386
BslI	CCNNNNNNNGG	4 cut(s)	81, 428, 889, 1198
BsmAI	GTCTC	1 cut(s)	1989
BsmBI	CGTCTC	1 cut(s)	1989
BsmFI	GGGAC	3 cut(s)	1090, 1192, 1386
BsmI	GAATGC	1 cut(s)	695
BsnI	GGCC	7 cut(s)	23, 387, 1393, 1405, 1636, 1649, 1941
BsoBI	CYCGRG	1 cut(s)	288
Bsp119I	TTCGAA	1 cut(s)	190
Bsp1286I	GDGCHC	2 cut(s)	128, 729
Bsp143I	GATC	5 cut(s)	130, 1363, 1819, 1834, 1949
BspACI	CCGC	9 cut(s)	14, 20, 32, 85, 112, 388, 932, 1169, 1568
BspANI	GGCC	7 cut(s)	23, 387, 1393, 1405, 1636, 1649, 1941
BspCNI	CTCAG	3 cut(s)	140, 693, 729
BspFNI	CGCG	1 cut(s)	238
BspHI	TCATGA	1 cut(s)	490
BspLI	GGNNCC	4 cut(s)	771, 894, 1189, 1951
BspPI	GGATC	2 cut(s)	1944, 1957
BspQI	GCTCTTC	1 cut(s)	149
BspT104I	TTCGAA	1 cut(s)	190
BsrFI	RCCGGY	1 cut(s)	195
BsrI	ACTGG	2 cut(s)	951, 1038
BssAI	RCCGGY	1 cut(s)	195
BssECI	CCNNGG	4 cut(s)	27, 1111, 1191, 1543
BssMI	GATC	5 cut(s)	130, 1363, 1819, 1834, 1949
BssNI	GRCGYC	1 cut(s)	212
BssSI	CACGAG	2 cut(s)	945, 2000
BssT1I	CCWWGG	1 cut(s)	1111
Bst2BI	CACGAG	2 cut(s)	945, 2000
Bst2UI	CCWGG	2 cut(s)	1193, 1545
Bst4CI	ACNGT	5 cut(s)	712, 792, 877, 1132, 1684
Bst6I	CTCTTC	3 cut(s)	149, 1603, 1865
BstACI	GRCGYC	1 cut(s)	212
BstBAI	YACGTR	1 cut(s)	1534
BstBI	TTCGAA	1 cut(s)	190
BstC8I	GCNNGC	2 cut(s)	337, 1057
BstDEI	CTNAG	8 cut(s)	127, 541, 564, 680, 716, 860, 1674, 2065
BstDSI	CCRYGG	1 cut(s)	27
BstF5I	GGATG	4 cut(s)	328, 1306, 1792, 1837
BstFNI	CGCG	1 cut(s)	238
BstH2I	RGCGCY	1 cut(s)	38
BstHHI	GCGC	2 cut(s)	37, 2050
BstKTI	GATC	5 cut(s)	133, 1366, 1822, 1837, 1952
BstMAI	GTCTC	1 cut(s)	1989
BstMBI	GATC	5 cut(s)	130, 1363, 1819, 1834, 1949
BstMWI	GCNNNNNNNGC	8 cut(s)	20, 29, 123, 226, 235, 763, 1313, 1938
BstNI	CCWGG	2 cut(s)	1193, 1545
BstNSI	RCATGY	6 cut(s)	172, 319, 871, 1007, 1047, 1708
BstSCI	CCNGG	3 cut(s)	207, 1191, 1543
BstSFI	CTRYAG	1 cut(s)	396
BstSLI	GKGCMC	1 cut(s)	729
BstUI	CGCG	1 cut(s)	238
BstV1I	GCAGC	4 cut(s)	988, 1052, 1316, 1367
BstV2I	GAAGAC	3 cut(s)	207, 1854, 1882
BstX2I	RGATCY	3 cut(s)	130, 1819, 1949
BstXI	CCANNNNNNTGG	1 cut(s)	1217
BstYI	RGATCY	3 cut(s)	130, 1819, 1949
BsuRI	GGCC	7 cut(s)	23, 387, 1393, 1405, 1636, 1649, 1941
BtgI	CCRYGG	1 cut(s)	27
BtrI	CACGTC	1 cut(s)	1880
BtsCI	GGATG	4 cut(s)	328, 1306, 1792, 1837
BtsIMutI	CAGTG	2 cut(s)	958, 1031
Cac8I	GCNNGC	2 cut(s)	337, 1057
CaiI	CAGNNNCTG	1 cut(s)	1361
CciI	TCATGA	1 cut(s)	490
CfoI	GCGC	2 cut(s)	37, 2050
Cfr10I	RCCGGY	1 cut(s)	195
Cfr13I	GGNCC	2 cut(s)	385, 1201
CseI	GACGC	3 cut(s)	201, 515, 1332
Csp6I	GTAC	4 cut(s)	293, 538, 553, 1502
CspAI	ACCGGT	1 cut(s)	195
CviQI	GTAC	4 cut(s)	293, 538, 553, 1502
DdeI	CTNAG	8 cut(s)	127, 541, 564, 680, 716, 860, 1674, 2065
DpnI	GATC	5 cut(s)	132, 1365, 1821, 1836, 1951
DpnII	GATC	5 cut(s)	130, 1363, 1819, 1834, 1949
DraI	TTTAAA	2 cut(s)	426, 987
DraIII	CACNNNGTG	1 cut(s)	1037
EaeI	YGGCCR	2 cut(s)	21, 1403
Eam1104I	CTCTTC	3 cut(s)	149, 1603, 1865
EarI	CTCTTC	3 cut(s)	149, 1603, 1865
EciI	GGCGGA	2 cut(s)	29, 100
Eco130I	CCWWGG	1 cut(s)	1111
Eco32I	GATATC	1 cut(s)	958
Eco47I	GGWCC	1 cut(s)	1201
Eco57I	CTGAAG	3 cut(s)	128, 1090, 1871
Eco88I	CYCGRG	1 cut(s)	288
EcoO109I	RGGNCCY	1 cut(s)	1201
EcoRII	CCWGG	2 cut(s)	1191, 1543
EcoRV	GATATC	1 cut(s)	958
EcoT14I	CCWWGG	1 cut(s)	1111
EcoT22I	ATGCAT	2 cut(s)	695, 1005
ErhI	CCWWGG	1 cut(s)	1111
Esp3I	CGTCTC	1 cut(s)	1989
FaqI	GGGAC	3 cut(s)	1090, 1192, 1386
FauI	CCCGC	1 cut(s)	1561
FbaI	TGATCA	1 cut(s)	1363
FblI	GTMKAC	1 cut(s)	1806
Fnu4HI	GCNGC	8 cut(s)	21, 33, 388, 977, 1041, 1169, 1305, 1356
FokI	GGATG	4 cut(s)	335, 1313, 1799, 1844
Fsp4HI	GCNGC	8 cut(s)	21, 33, 388, 977, 1041, 1169, 1305, 1356
FspBI	CTAG	1 cut(s)	1178
GlaI	GCGC	2 cut(s)	36, 2049
GluI	GCNGC	8 cut(s)	21, 33, 388, 977, 1041, 1169, 1305, 1356
GsaI	CCCAGC	3 cut(s)	41, 1607, 1849
GsuI	CTGGAG	1 cut(s)	1492
HaeII	RGCGCY	1 cut(s)	38
HaeIII	GGCC	7 cut(s)	23, 387, 1393, 1405, 1636, 1649, 1941
HapII	CCGG	2 cut(s)	196, 209
HgaI	GACGC	3 cut(s)	201, 515, 1332
HhaI	GCGC	2 cut(s)	37, 2050
Hin1I	GRCGYC	1 cut(s)	212
Hin6I	GCGC	2 cut(s)	35, 2048
HinP1I	GCGC	2 cut(s)	35, 2048
HincII	GTYRAC	2 cut(s)	1807, 1996
HindII	GTYRAC	2 cut(s)	1807, 1996
HindIII	AAGCTT	1 cut(s)	2062
HinfI	GANTC	4 cut(s)	560, 1552, 1975, 2024
HpaII	CCGG	2 cut(s)	196, 209
HphI	GGTGA	2 cut(s)	662, 1165
Hpy166II	GTNNAC	3 cut(s)	727, 1807, 1996
Hpy188I	TCNGA	9 cut(s)	76, 108, 130, 277, 744, 962, 1387, 1720, 1774
Hpy8I	GTNNAC	3 cut(s)	727, 1807, 1996
Hpy99I	CGWCG	2 cut(s)	122, 254
HpyCH4III	ACNGT	5 cut(s)	712, 792, 877, 1132, 1684
HpyCH4IV	ACGT	2 cut(s)	1533, 1879
HpyF10VI	GCNNNNNNNGC	8 cut(s)	20, 29, 123, 226, 235, 763, 1313, 1938
HpyF3I	CTNAG	8 cut(s)	127, 541, 564, 680, 716, 860, 1674, 2065
HpySE526I	ACGT	2 cut(s)	1533, 1879
Hsp92I	GRCGYC	1 cut(s)	212
HspAI	GCGC	2 cut(s)	35, 2048
Ksp22I	TGATCA	1 cut(s)	1363
Kzo9I	GATC	5 cut(s)	130, 1363, 1819, 1834, 1949
LguI	GCTCTTC	1 cut(s)	149
LmnI	GCTCC	2 cut(s)	114, 1363
Lsp1109I	GCAGC	4 cut(s)	988, 1052, 1316, 1367
LweI	GCATC	2 cut(s)	322, 1291
MaeI	CTAG	1 cut(s)	1178
MaeII	ACGT	2 cut(s)	1533, 1879
MaeIII	GTNAC	5 cut(s)	364, 569, 668, 877, 1029
MalI	GATC	5 cut(s)	132, 1365, 1821, 1836, 1951
MboI	GATC	5 cut(s)	130, 1363, 1819, 1834, 1949
MfeI	CAATTG	1 cut(s)	1367
MflI	RGATCY	3 cut(s)	130, 1819, 1949
MhlI	GDGCHC	2 cut(s)	128, 729
MluCI	AATT	4 cut(s)	634, 737, 1367, 1663
MlyI	GAGTC	1 cut(s)	554
MmeI	TCCRAC	2 cut(s)	300, 1666
Mph1103I	ATGCAT	2 cut(s)	695, 1005
MseI	TTAA	5 cut(s)	225, 425, 639, 986, 1275
MspA1I	CMGCKG	3 cut(s)	766, 1307, 1849
MspI	CCGG	2 cut(s)	196, 209
MspR9I	CCNGG	3 cut(s)	209, 1193, 1545
MunI	CAATTG	1 cut(s)	1367
Mva1269I	GAATGC	1 cut(s)	695
MvaI	CCWGG	2 cut(s)	1193, 1545
MvnI	CGCG	1 cut(s)	238
MwoI	GCNNNNNNNGC	8 cut(s)	20, 29, 123, 226, 235, 763, 1313, 1938
NciI	CCSGG	1 cut(s)	209
NdeII	GATC	5 cut(s)	130, 1363, 1819, 1834, 1949
NlaIV	GGNNCC	4 cut(s)	771, 894, 1189, 1951
NmuCI	GTSAC	2 cut(s)	668, 1029
NsiI	ATGCAT	2 cut(s)	695, 1005
NspI	RCATGY	6 cut(s)	172, 319, 871, 1007, 1047, 1708
NspV	TTCGAA	1 cut(s)	190
PaeR7I	CTCGAG	1 cut(s)	288
PagI	TCATGA	1 cut(s)	490
PciI	ACATGT	1 cut(s)	168
PciSI	GCTCTTC	1 cut(s)	149
PctI	GAATGC	1 cut(s)	695
PfeI	GAWTC	3 cut(s)	1552, 1975, 2024
PinAI	ACCGGT	1 cut(s)	195
PkrI	GCNGC	8 cut(s)	22, 34, 389, 978, 1042, 1170, 1306, 1357
PleI	GAGTC	1 cut(s)	554
PpsI	GAGTC	1 cut(s)	554
Ppu21I	YACGTR	1 cut(s)	1534
PpuMI	RGGWCCY	1 cut(s)	1201
PscI	ACATGT	1 cut(s)	168
Psp5II	RGGWCCY	1 cut(s)	1201
Psp6I	CCWGG	2 cut(s)	1191, 1543
PspFI	CCCAGC	3 cut(s)	37, 1603, 1845
PspGI	CCWGG	2 cut(s)	1191, 1543
PspN4I	GGNNCC	4 cut(s)	771, 894, 1189, 1951
PspPI	GGNCC	2 cut(s)	385, 1201
PspPPI	RGGWCCY	1 cut(s)	1201
PspXI	VCTCGAGB	1 cut(s)	288
PsrI	GAACNNNNNNTAC	2 cut(s)	1108, 1140
PstNI	CAGNNNCTG	1 cut(s)	1361
PsuI	RGATCY	3 cut(s)	130, 1819, 1949
PvuII	CAGCTG	3 cut(s)	766, 1307, 1849
RsaI	GTAC	4 cut(s)	294, 539, 554, 1503
RsaNI	GTAC	4 cut(s)	293, 538, 553, 1502
SalI	GTCGAC	1 cut(s)	1805
SapI	GCTCTTC	1 cut(s)	149
SaqAI	TTAA	5 cut(s)	225, 425, 639, 986, 1275
SatI	GCNGC	8 cut(s)	21, 33, 388, 977, 1041, 1169, 1305, 1356
Sau3AI	GATC	5 cut(s)	130, 1363, 1819, 1834, 1949
Sau96I	GGNCC	2 cut(s)	385, 1201
ScaI	AGTACT	1 cut(s)	1503
SchI	GAGTC	1 cut(s)	554
ScrFI	CCNGG	3 cut(s)	209, 1193, 1545
SduI	GDGCHC	2 cut(s)	128, 729
SfaNI	GCATC	2 cut(s)	322, 1291
SfcI	CTRYAG	1 cut(s)	396
Sfr274I	CTCGAG	1 cut(s)	288
SfuI	TTCGAA	1 cut(s)	190
SinI	GGWCC	1 cut(s)	1201
SlaI	CTCGAG	1 cut(s)	288
SmlI	CTYRAG	7 cut(s)	160, 230, 260, 288, 828, 1325, 1593
SmoI	CTYRAG	7 cut(s)	160, 230, 260, 288, 828, 1325, 1593
Sse9I	AATT	4 cut(s)	634, 737, 1367, 1663
SsiI	CCGC	9 cut(s)	14, 20, 32, 85, 112, 388, 932, 1169, 1568
SspI	AATATT	1 cut(s)	2015
SspMI	CTAG	1 cut(s)	1178
StyD4I	CCNGG	3 cut(s)	207, 1191, 1543
StyI	CCWWGG	1 cut(s)	1111
TaaI	ACNGT	5 cut(s)	712, 792, 877, 1132, 1684
TaiI	ACGT	2 cut(s)	1536, 1882
TaqI	TCGA	6 cut(s)	190, 252, 289, 819, 1806, 1865
TasI	AATT	4 cut(s)	634, 737, 1367, 1663
TatI	WGTACW	1 cut(s)	1501
TauI	GCSGC	4 cut(s)	23, 35, 390, 1171
TfiI	GAWTC	3 cut(s)	1552, 1975, 2024
Tru1I	TTAA	5 cut(s)	225, 425, 639, 986, 1275
Tru9I	TTAA	5 cut(s)	225, 425, 639, 986, 1275
TscAI	CASTG	2 cut(s)	958, 1038
TseFI	GTSAC	2 cut(s)	668, 1029
TseI	GCWGC	4 cut(s)	976, 1040, 1304, 1355
Tsp45I	GTSAC	2 cut(s)	668, 1029
TspDTI	ATGAA	8 cut(s)	86, 479, 1326, 1425, 1767, 1803, 1815, 2028
TspGWI	ACGGA	2 cut(s)	391, 457
TspRI	CASTG	2 cut(s)	958, 1038
VneI	GTGCAC	1 cut(s)	725
VpaK11BI	GGWCC	1 cut(s)	1201
XapI	RAATTY	1 cut(s)	737
XceI	RCATGY	6 cut(s)	172, 319, 871, 1007, 1047, 1708
XcmI	CCANNNNNNNNNTGG	1 cut(s)	34
XhoI	CTCGAG	1 cut(s)	288
XmiI	GTMKAC	1 cut(s)	1806
XspI	CTAG	1 cut(s)	1178
ZrmI	AGTACT	1 cut(s)	1503
Zsp2I	ATGCAT	2 cut(s)	695, 1005

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.